Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS16795

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,822,375	-				+0.5
3,822,435	+				-0.5
3,822,435	+				-0.7
3,822,435	+				-0.1
3,822,436	-				-1.2
3,822,436	-				-0.5
3,822,436	-				+1.0
3,822,438	+				+5.8
3,822,438	+				+0.1
3,822,438	+				+1.0
3,822,471	+				+0.4
3,822,471	+				-0.5
3,822,472	-				+0.1
3,822,472	-				-1.6
3,822,472	-				-0.3
3,822,508	+				+0.4
3,822,509	-				-2.2
3,822,509	-				-1.7
3,822,509	-				-1.2
3,822,511	+				-1.1
3,822,512	-				+1.1
3,822,512	-				-0.0
3,822,711	+		DDA3937_RS16795	0.68	-0.9
3,822,711	+		DDA3937_RS16795	0.68	-1.4
3,822,731	+		DDA3937_RS16795	0.74	+0.1
3,822,731	+		DDA3937_RS16795	0.74	-0.2
3,822,732	-		DDA3937_RS16795	0.74	-2.1
3,822,793	+				-0.8
3,822,888	+				-0.9
3,822,888	+				-1.6
3,822,888	+				-0.5
3,822,889	-				-1.0
3,822,939	+				-2.3
3,822,939	+				-1.2
3,822,940	-				-0.4
3,822,940	-				-0.5
3,822,940	-				-1.9
3,822,940	-				+0.3
3,822,940	-				-0.3
3,822,978	+		DDA3937_RS16800	0.13	-0.1
3,822,978	+		DDA3937_RS16800	0.13	-0.4
3,822,978	+		DDA3937_RS16800	0.13	-0.5
3,822,978	+		DDA3937_RS16800	0.13	-0.2
3,822,979	-		DDA3937_RS16800	0.13	-0.1
3,822,979	-		DDA3937_RS16800	0.13	+1.2
3,823,053	+		DDA3937_RS16800	0.19	+0.6
3,823,053	+		DDA3937_RS16800	0.19	-0.1
3,823,305	+		DDA3937_RS16800	0.38	-0.8
3,823,305	+		DDA3937_RS16800	0.38	-0.5
3,823,306	-		DDA3937_RS16800	0.38	+0.4
3,823,315	+		DDA3937_RS16800	0.39	+0.8
3,823,317	+		DDA3937_RS16800	0.39	-1.1
3,823,317	+		DDA3937_RS16800	0.39	-0.3
3,823,317	+		DDA3937_RS16800	0.39	-0.2
3,823,317	+		DDA3937_RS16800	0.39	-1.7
3,823,317	+		DDA3937_RS16800	0.39	-0.8
3,823,317	+		DDA3937_RS16800	0.39	-0.9
3,823,317	+		DDA3937_RS16800	0.39	-0.9
3,823,317	+				-1.5
3,823,317	+		DDA3937_RS16800	0.39	+1.1
3,823,317	+		DDA3937_RS16800	0.39	+0.1
3,823,318	-		DDA3937_RS16800	0.39	+0.7
3,823,318	-		DDA3937_RS16800	0.39	+2.3
3,823,318	-		DDA3937_RS16800	0.39	-0.8
3,823,318	-		DDA3937_RS16800	0.39	-2.2
3,823,318	-		DDA3937_RS16800	0.39	-1.3
3,823,318	-		DDA3937_RS16800	0.39	+0.7
3,823,318	-		DDA3937_RS16800	0.39	+1.8
3,823,318	-		DDA3937_RS16800	0.39	+0.7
3,823,318	-		DDA3937_RS16800	0.39	-0.5
3,823,324	+		DDA3937_RS16800	0.39	-1.1
3,823,324	+		DDA3937_RS16800	0.39	-0.8
3,823,324	+		DDA3937_RS16800	0.39	-0.2
3,823,325	-		DDA3937_RS16800	0.39	+0.1
3,823,326	+		DDA3937_RS16800	0.40	+0.1
3,823,326	+		DDA3937_RS16800	0.40	-0.6
3,823,326	+		DDA3937_RS16800	0.40	+1.4
3,823,326	+		DDA3937_RS16800	0.40	-2.1
3,823,326	+		DDA3937_RS16800	0.40	+0.9
3,823,326	+		DDA3937_RS16800	0.40	-0.7
3,823,326	+		DDA3937_RS16800	0.40	-0.3
3,823,326	+		DDA3937_RS16800	0.40	-1.6
3,823,326	+		DDA3937_RS16800	0.40	+0.5
3,823,326	+				+0.8
3,823,326	+		DDA3937_RS16800	0.40	-0.3
3,823,326	+		DDA3937_RS16800	0.40	-3.0
3,823,326	+		DDA3937_RS16800	0.40	+0.6
3,823,326	+		DDA3937_RS16800	0.40	+0.5
3,823,327	-		DDA3937_RS16800	0.40	-1.5
3,823,327	-		DDA3937_RS16800	0.40	-1.6
3,823,327	-		DDA3937_RS16800	0.40	-1.8
3,823,327	-		DDA3937_RS16800	0.40	-1.4
3,823,327	-		DDA3937_RS16800	0.40	+3.1
3,823,327	-		DDA3937_RS16800	0.40	+2.8
3,823,327	-		DDA3937_RS16800	0.40	-0.2
3,823,327	-		DDA3937_RS16800	0.40	+0.4
3,823,327	-		DDA3937_RS16800	0.40	-0.1
3,823,327	-		DDA3937_RS16800	0.40	-2.2
3,823,330	+		DDA3937_RS16800	0.40	-2.3
3,823,330	+		DDA3937_RS16800	0.40	-0.8
3,823,330	+		DDA3937_RS16800	0.40	-1.1
3,823,330	+		DDA3937_RS16800	0.40	+1.1
3,823,331	-		DDA3937_RS16800	0.40	-2.2
3,823,331	-		DDA3937_RS16800	0.40	-0.3
3,823,331	-		DDA3937_RS16800	0.40	-0.3
3,823,331	-		DDA3937_RS16800	0.40	-1.0
3,823,331	-		DDA3937_RS16800	0.40	+0.3
3,823,332	+		DDA3937_RS16800	0.40	-1.2
3,823,332	+		DDA3937_RS16800	0.40	+0.6
3,823,333	-		DDA3937_RS16800	0.40	+0.8
3,823,333	-		DDA3937_RS16800	0.40	+0.1
3,823,333	-		DDA3937_RS16800	0.40	-1.0
3,823,333	-		DDA3937_RS16800	0.40	-0.3
3,823,372	+		DDA3937_RS16800	0.43	-0.1
3,823,372	+		DDA3937_RS16800	0.43	-1.7
3,823,385	-		DDA3937_RS16800	0.44	+0.5
3,823,502	+		DDA3937_RS16800	0.53	-1.7
3,823,516	+		DDA3937_RS16800	0.54	+1.1
3,823,532	-		DDA3937_RS16800	0.55	+0.7
3,823,544	-		DDA3937_RS16800	0.56	+1.3
3,823,546	-		DDA3937_RS16800	0.57	+0.3
3,823,572	-		DDA3937_RS16800	0.59	+1.7
3,823,572	-		DDA3937_RS16800	0.59	-1.0
3,823,572	-		DDA3937_RS16800	0.59	+1.1
3,823,572	-		DDA3937_RS16800	0.59	-1.2
3,823,574	+		DDA3937_RS16800	0.59	+0.5
3,823,575	-		DDA3937_RS16800	0.59	-0.4
3,823,581	-		DDA3937_RS16800	0.59	-0.7
3,823,614	+		DDA3937_RS16800	0.62	+0.1
3,823,614	+		DDA3937_RS16800	0.62	-2.1
3,823,614	+		DDA3937_RS16800	0.62	-0.3
3,823,614	+		DDA3937_RS16800	0.62	+0.5
3,823,614	+		DDA3937_RS16800	0.62	+1.7
3,823,629	+		DDA3937_RS16800	0.63	-1.1
3,823,629	+		DDA3937_RS16800	0.63	-1.2
3,823,630	-		DDA3937_RS16800	0.63	-0.2
3,823,630	-		DDA3937_RS16800	0.63	+0.5
3,823,630	-		DDA3937_RS16800	0.63	+0.9
3,823,639	+		DDA3937_RS16800	0.64	-0.8
3,823,666	+		DDA3937_RS16800	0.66	+0.5
3,823,667	-		DDA3937_RS16800	0.66	-0.2
3,823,667	-		DDA3937_RS16800	0.66	+1.7
3,823,667	-		DDA3937_RS16800	0.66	-0.9
3,823,667	-		DDA3937_RS16800	0.66	-1.4
3,823,668	+		DDA3937_RS16800	0.66	+1.1
3,823,668	+		DDA3937_RS16800	0.66	+0.3
3,823,668	+		DDA3937_RS16800	0.66	-0.8
3,823,668	+		DDA3937_RS16800	0.66	+0.8
3,823,669	-		DDA3937_RS16800	0.66	-0.9
3,823,669	-		DDA3937_RS16800	0.66	-1.6
3,823,669	-		DDA3937_RS16800	0.66	+0.9
3,823,669	-		DDA3937_RS16800	0.66	+0.7
3,823,669	-		DDA3937_RS16800	0.66	-0.5
3,823,669	-		DDA3937_RS16800	0.66	+2.5
3,823,669	-		DDA3937_RS16800	0.66	+0.3
3,823,678	+		DDA3937_RS16800	0.67	-1.2
3,823,679	-		DDA3937_RS16800	0.67	-0.1
3,823,681	+		DDA3937_RS16800	0.67	-1.2
3,823,681	+		DDA3937_RS16800	0.67	-1.9
3,823,681	+		DDA3937_RS16800	0.67	+0.7
3,823,681	+		DDA3937_RS16800	0.67	+0.1
3,823,682	-		DDA3937_RS16800	0.67	-3.3
3,823,682	-		DDA3937_RS16800	0.67	-0.6
3,823,682	-		DDA3937_RS16800	0.67	+0.2
3,823,724	+		DDA3937_RS16800	0.70	-0.8
3,823,725	-		DDA3937_RS16800	0.70	-0.2