Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS16260

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,705,871	+				-0.6
3,705,872	-				-0.0
3,705,900	+				-0.6
3,705,901	-				-0.5
3,705,901	-				-0.3
3,706,023	+				+1.7
3,706,037	-				-1.3
3,706,079	+				+2.8
3,706,145	-				-0.2
3,706,145	-				-0.2
3,706,150	-				-0.8
3,706,262	+				-0.4
3,706,267	-				-1.1
3,706,426	+				-0.6
3,706,435	+				+1.0
3,706,475	+				+0.5
3,706,506	+				+0.0
3,706,506	+				+0.0
3,706,507	-				-1.0
3,706,507	-				-1.0
3,706,507	-				+1.6
3,706,507	-				+0.4
3,706,507	-				+0.5
3,706,532	+				-0.7
3,706,533	-				-0.5
3,706,535	+				+0.3
3,706,535	+				-2.5
3,706,536	-				-0.1
3,706,536	-				+0.4
3,706,548	-				+1.0
3,706,584	+				-3.3
3,706,585	-				-1.3
3,706,706	+				-1.0
3,706,706	+				-0.9
3,706,706	+				-0.9
3,706,706	+				-0.2
3,706,706	+				-0.5
3,706,707	-				-1.4
3,706,751	+				+0.1
3,706,759	+				+0.9
3,706,759	+				-1.2
3,706,760	-				-0.7
3,706,760	-				-1.5
3,706,804	+				+0.5
3,706,804	+				-0.8
3,706,804	+				+0.8
3,706,842	+				-1.4
3,706,842	+				+1.1
3,706,843	-				-2.1
3,706,843	-				+0.0
3,706,843	-				-0.2
3,706,858	+				-0.3
3,706,886	-		DDA3937_RS16260	0.12	+1.5
3,706,886	-		DDA3937_RS16260	0.12	-1.3
3,706,886	-		DDA3937_RS16260	0.12	-0.4
3,706,942	+		DDA3937_RS16260	0.23	-1.0
3,706,984	+		DDA3937_RS16260	0.31	-0.3
3,706,985	-		DDA3937_RS16260	0.31	-1.5
3,707,036	+		DDA3937_RS16260	0.41	-0.2
3,707,036	+		DDA3937_RS16260	0.41	-0.3
3,707,036	+		DDA3937_RS16260	0.41	-0.5
3,707,036	+		DDA3937_RS16260	0.41	-1.0
3,707,036	+		DDA3937_RS16260	0.41	-1.6
3,707,036	+		DDA3937_RS16260	0.41	+0.2
3,707,036	+		DDA3937_RS16260	0.41	-0.5
3,707,037	-		DDA3937_RS16260	0.41	-0.3
3,707,037	-		DDA3937_RS16260	0.41	-0.4
3,707,037	-		DDA3937_RS16260	0.41	-0.2
3,707,038	+		DDA3937_RS16260	0.41	-0.3
3,707,038	+		DDA3937_RS16260	0.41	+0.1
3,707,038	+		DDA3937_RS16260	0.41	-1.3
3,707,038	+		DDA3937_RS16260	0.41	-1.5
3,707,038	+		DDA3937_RS16260	0.41	-1.1
3,707,038	+		DDA3937_RS16260	0.41	-2.3
3,707,039	-		DDA3937_RS16260	0.42	-0.6
3,707,039	-		DDA3937_RS16260	0.42	+1.0
3,707,039	-		DDA3937_RS16260	0.42	-1.5
3,707,039	-		DDA3937_RS16260	0.42	-1.9
3,707,039	-		DDA3937_RS16260	0.42	-0.5
3,707,083	+		DDA3937_RS16260	0.50	-1.2
3,707,084	-		DDA3937_RS16260	0.50	-0.3
3,707,182	+		DDA3937_RS16260	0.69	-1.0
3,707,241	+		DDA3937_RS16260	0.81	+1.0
3,707,241	+		DDA3937_RS16260	0.81	-0.7
3,707,241	+		DDA3937_RS16260	0.81	+0.1
3,707,242	-		DDA3937_RS16260	0.81	-0.4
3,707,242	-		DDA3937_RS16260	0.81	-0.3
3,707,242	-		DDA3937_RS16260	0.81	+0.7
3,707,349	-				-1.8
3,707,349	-				+1.0
3,707,364	+				-1.4
3,707,364	+				+1.0
3,707,364	+				-0.3
3,707,365	-				-0.8
3,707,365	-				-1.4
3,707,365	-				-1.3
3,707,365	-				+1.5
3,707,365	-				+1.2
3,707,365	-				+1.6
3,707,365	-				-0.1
3,707,401	+				+0.6
3,707,402	-				+1.6
3,707,417	+				+0.9
3,707,420	+				+0.1
3,707,421	-				-1.4
3,707,421	-				-0.6
3,707,451	+				-0.0
3,707,468	+				+1.0
3,707,468	+				+1.0
3,707,468	+				-0.3
3,707,469	-				-1.4
3,707,469	-				-0.4
3,707,469	-				-1.5
3,707,469	-				-0.2
3,707,469	-				+1.0
3,707,469	-				-0.8
3,707,469	-				-0.3
3,707,469	-				-0.0
3,707,469	-				-1.0
3,707,477	+		DDA3937_RS16265	0.11	+0.2
3,707,477	+		DDA3937_RS16265	0.11	-0.1
3,707,478	-		DDA3937_RS16265	0.11	-1.8
3,707,478	-		DDA3937_RS16265	0.11	-0.4
3,707,478	-		DDA3937_RS16265	0.11	-0.4
3,707,478	-		DDA3937_RS16265	0.11	-1.5
3,707,551	+		DDA3937_RS16265	0.25	-2.2
3,707,551	+		DDA3937_RS16265	0.25	-3.6
3,707,551	+		DDA3937_RS16265	0.25	-1.4
3,707,552	-		DDA3937_RS16265	0.25	+0.6
3,707,552	-		DDA3937_RS16265	0.25	+0.0
3,707,552	-		DDA3937_RS16265	0.25	-1.7
3,707,562	+		DDA3937_RS16265	0.27	-1.7
3,707,563	-		DDA3937_RS16265	0.27	+1.0
3,707,627	+		DDA3937_RS16265	0.39	-0.8
3,707,628	-		DDA3937_RS16265	0.39	-0.1
3,707,630	+		DDA3937_RS16265	0.40	-0.0
3,707,630	+		DDA3937_RS16265	0.40	-0.5
3,707,630	+		DDA3937_RS16265	0.40	-0.8
3,707,630	+		DDA3937_RS16265	0.40	-0.4
3,707,631	-		DDA3937_RS16265	0.40	-1.5
3,707,631	-		DDA3937_RS16265	0.40	-1.1
3,707,631	-		DDA3937_RS16265	0.40	-0.8
3,707,631	-		DDA3937_RS16265	0.40	+0.1
3,707,631	-		DDA3937_RS16265	0.40	+1.0
3,707,631	-		DDA3937_RS16265	0.40	-0.5
3,707,631	-		DDA3937_RS16265	0.40	-1.0
3,707,675	+		DDA3937_RS16265	0.48	-1.3
3,707,675	+		DDA3937_RS16265	0.48	-1.1
3,707,675	+		DDA3937_RS16265	0.48	+0.3
3,707,675	+		DDA3937_RS16265	0.48	+0.7
3,707,676	-		DDA3937_RS16265	0.48	+3.9
3,707,745	+		DDA3937_RS16265	0.61	-0.5
3,707,745	+		DDA3937_RS16265	0.61	-0.5
3,707,746	-		DDA3937_RS16265	0.61	-0.2
3,707,746	-		DDA3937_RS16265	0.61	-1.3
3,707,764	+		DDA3937_RS16265	0.65	+0.6
3,707,765	-		DDA3937_RS16265	0.65	-1.1
3,707,817	+		DDA3937_RS16265	0.75	-0.1
3,707,842	-		DDA3937_RS16265	0.79	+0.5
3,707,866	+		DDA3937_RS16265	0.84	-0.7
3,707,866	+		DDA3937_RS16265	0.84	+0.5
3,707,866	+		DDA3937_RS16265	0.84	+0.3
3,707,867	-		DDA3937_RS16265	0.84	-1.3
3,707,867	-		DDA3937_RS16265	0.84	-1.9
3,707,867	-		DDA3937_RS16265	0.84	+0.5
3,707,882	+		DDA3937_RS16265	0.87	+0.1
3,707,882	+		DDA3937_RS16265	0.87	+0.0
3,707,882	+		DDA3937_RS16265	0.87	-0.7
3,707,883	-		DDA3937_RS16265	0.87	-1.6
3,707,883	-		DDA3937_RS16265	0.87	-2.1
3,707,890	+		DDA3937_RS16265	0.88	+0.4
3,707,891	-		DDA3937_RS16265	0.88	-0.2
3,707,893	+		DDA3937_RS16265	0.89	-0.1
3,707,893	+		DDA3937_RS16265	0.89	-0.8
3,707,894	-		DDA3937_RS16265	0.89	+3.6
3,707,894	-		DDA3937_RS16265	0.89	+0.8
3,707,905	+				-2.1
3,707,906	-				+2.0
3,707,939	+				+1.9
3,707,939	+				-2.1
3,707,939	+				+0.2
3,707,940	-				+0.6
3,707,940	-				-2.1
3,707,940	-				+0.3
3,707,940	-				+0.4
3,707,940	-				+1.4
3,707,940	-				-0.3
3,707,968	+				-0.8
3,707,969	-				-0.5
3,707,976	+				-1.7
3,707,976	+				-1.5
3,707,976	+				+0.7
3,707,977	-				-1.3
3,707,977	-				+0.2
3,707,977	-				-0.2
3,707,993	+				-0.1
3,707,994	-				-0.1
3,707,994	-				-0.1
3,707,994	-				-1.9
3,707,995	+				-0.4
3,707,995	+				-1.0
3,708,004	+				-1.0
3,708,004	+				-0.4
3,708,004	+				-0.2
3,708,005	-				-1.4
3,708,005	-				-1.1
3,708,005	-				-1.4
3,708,011	+				+1.1
3,708,011	+				-0.7
3,708,012	-				-1.6
3,708,020	+				+1.0
3,708,020	+				+1.2
3,708,020	+				+0.0
3,708,021	-				+0.8
3,708,021	-				-0.7
3,708,025	+				+0.9
3,708,025	+				+0.2
3,708,025	+				+0.1
3,708,025	+				-1.8
3,708,025	+				-1.8
3,708,026	-				-0.3
3,708,026	-				+0.1
3,708,026	-				-1.8
3,708,026	-				-1.3
3,708,026	-				+0.4
3,708,030	+				+0.5
3,708,030	+				-2.0
3,708,030	+				-0.2
3,708,030	+				+0.5
3,708,030	+				-0.0
3,708,031	-				-1.3
3,708,031	-				+0.0
3,708,036	+				-0.8
3,708,036	+				+0.0
3,708,036	+				+0.2
3,708,037	-				+1.0
3,708,037	-				-1.3
3,708,037	-				-1.8
3,708,037	-				-1.8
3,708,037	-				+1.4
3,708,043	+				-0.1
3,708,113	+				-0.0
3,708,114	-				-2.0
3,708,114	-				-1.0
3,708,114	-				+1.4
3,708,130	+				-0.1
3,708,131	-				-0.8
3,708,131	-				-1.0
3,708,131	-				+1.0
3,708,146	+				-0.8
3,708,146	+				-1.0
3,708,150	+				-0.1
3,708,150	+				-1.3
3,708,150	+				-0.2
3,708,151	-				+0.6
3,708,151	-				+0.5
3,708,183	+				+1.2
3,708,197	+				+0.2
3,708,197	+				+0.7
3,708,198	-				-3.5
3,708,198	-				+1.0
3,708,199	+				-0.1
3,708,199	+				-0.3
3,708,199	+				-1.4
3,708,199	+				-0.3
3,708,200	-				-0.5
3,708,238	+				-0.5
3,708,238	+				+0.4
3,708,239	-				-0.1
3,708,258	+				-0.6
3,708,259	-				+0.6