Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS15625

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,577,537	-		DDA3937_RS15620	0.26	-0.2
3,577,658	+		DDA3937_RS15620	0.36	+1.8
3,577,658	+		DDA3937_RS15620	0.36	-1.0
3,577,659	-		DDA3937_RS15620	0.36	-1.6
3,577,680	+		DDA3937_RS15620	0.38	-1.2
3,577,680	+		DDA3937_RS15620	0.38	+2.4
3,577,680	+		DDA3937_RS15620	0.38	+1.4
3,577,680	+		DDA3937_RS15620	0.38	+0.9
3,577,680	+		DDA3937_RS15620	0.38	+0.7
3,577,680	+		DDA3937_RS15620	0.38	+0.4
3,577,681	-		DDA3937_RS15620	0.38	+1.0
3,577,681	-		DDA3937_RS15620	0.38	-1.3
3,577,702	+		DDA3937_RS15620	0.40	-2.2
3,577,702	+		DDA3937_RS15620	0.40	+1.1
3,577,702	+		DDA3937_RS15620	0.40	-0.6
3,577,702	+		DDA3937_RS15620	0.40	+0.1
3,577,703	-		DDA3937_RS15620	0.40	+0.6
3,577,703	-		DDA3937_RS15620	0.40	-1.3
3,577,703	-		DDA3937_RS15620	0.40	+0.1
3,577,703	-		DDA3937_RS15620	0.40	-0.0
3,577,714	-		DDA3937_RS15620	0.41	+1.0
3,577,827	+		DDA3937_RS15620	0.50	+0.2
3,577,827	+		DDA3937_RS15620	0.50	-1.1
3,577,827	+		DDA3937_RS15620	0.50	+0.4
3,577,827	+		DDA3937_RS15620	0.50	-0.2
3,577,896	+		DDA3937_RS15620	0.56	+0.2
3,577,897	-		DDA3937_RS15620	0.56	+0.0
3,577,897	-		DDA3937_RS15620	0.56	-0.1
3,577,897	-		DDA3937_RS15620	0.56	-2.6
3,577,997	+		DDA3937_RS15620	0.65	-0.8
3,578,037	-		DDA3937_RS15620	0.68	+0.7
3,578,047	+		DDA3937_RS15620	0.69	+0.8
3,578,070	+		DDA3937_RS15620	0.71	-0.8
3,578,070	+		DDA3937_RS15620	0.71	+0.6
3,578,070	+				+2.0
3,578,070	+		DDA3937_RS15620	0.71	+0.4
3,578,071	-		DDA3937_RS15620	0.71	-1.6
3,578,071	-		DDA3937_RS15620	0.71	-0.5
3,578,071	-		DDA3937_RS15620	0.71	-2.2
3,578,071	-		DDA3937_RS15620	0.71	+0.8
3,578,071	-		DDA3937_RS15620	0.71	+1.4
3,578,071	-		DDA3937_RS15620	0.71	-0.2
3,578,071	-		DDA3937_RS15620	0.71	-1.2
3,578,072	+		DDA3937_RS15620	0.71	-0.2
3,578,072	+		DDA3937_RS15620	0.71	-0.4
3,578,072	+		DDA3937_RS15620	0.71	+2.8
3,578,072	+		DDA3937_RS15620	0.71	-0.7
3,578,073	-		DDA3937_RS15620	0.71	-1.0
3,578,073	-				+1.0
3,578,073	-		DDA3937_RS15620	0.71	-0.6
3,578,073	-		DDA3937_RS15620	0.71	-1.5
3,578,073	-		DDA3937_RS15620	0.71	-1.3
3,578,073	-		DDA3937_RS15620	0.71	-1.1
3,578,073	-		DDA3937_RS15620	0.71	-0.4
3,578,082	+		DDA3937_RS15620	0.72	+0.0
3,578,083	-		DDA3937_RS15620	0.72	-0.5
3,578,116	-		DDA3937_RS15620	0.75	+0.4
3,578,121	+		DDA3937_RS15620	0.75	+0.9
3,578,121	+		DDA3937_RS15620	0.75	-0.7
3,578,121	+		DDA3937_RS15620	0.75	-0.2
3,578,121	+		DDA3937_RS15620	0.75	+0.8
3,578,248	+		DDA3937_RS15620	0.86	-0.5
3,578,248	+		DDA3937_RS15620	0.86	-1.2
3,578,248	+		DDA3937_RS15620	0.86	+2.1
3,578,249	-		DDA3937_RS15620	0.86	+1.4
3,578,249	-		DDA3937_RS15620	0.86	-0.1
3,578,249	-		DDA3937_RS15620	0.86	-0.6
3,578,249	-		DDA3937_RS15620	0.86	+0.2
3,578,291	+		DDA3937_RS15620	0.89	-0.7
3,578,291	+		DDA3937_RS15620	0.89	-0.3
3,578,292	-		DDA3937_RS15620	0.90	-1.0
3,578,292	-		DDA3937_RS15620	0.90	+0.3
3,578,319	+				-3.0
3,578,343	+				-0.6
3,578,343	+				+0.7
3,578,344	-				+0.3
3,578,344	-				+0.1
3,578,344	-				+0.4
3,578,366	+				-1.2
3,578,366	+				+0.3
3,578,366	+				-1.0
3,578,367	-				+0.0
3,578,367	-				+0.8
3,578,367	-				-1.1
3,578,367	-				+0.7
3,578,367	-				-0.9
3,578,367	-				-2.6
3,578,376	-				-0.8
3,578,376	-				-0.5
3,578,387	+				-1.0
3,578,387	+				-0.3
3,578,387	+				+0.3
3,578,387	+				+0.1
3,578,387	+				+1.7
3,578,388	-				-1.3
3,578,388	-				-1.7
3,578,413	-				+0.6
3,578,413	-				-0.9
3,578,428	-				-0.7
3,578,477	-				-1.8
3,578,600	+				+0.4
3,578,600	+				+0.7
3,578,600	+				-0.2
3,578,600	+				+0.0
3,578,600	+				+1.4
3,578,601	-				-0.1
3,578,601	-				+0.5
3,578,601	-				+0.6
3,578,639	+				+2.2
3,578,639	+				-0.9
3,578,639	+				+0.2
3,578,639	+				-1.1
3,578,640	-				+0.1
3,578,640	-				-0.6
3,578,640	-				+0.2
3,578,674	+		DDA3937_RS15625	0.11	-1.3
3,578,674	+		DDA3937_RS15625	0.11	+1.6
3,578,674	+		DDA3937_RS15625	0.11	-1.3
3,578,674	+		DDA3937_RS15625	0.11	-0.7
3,578,674	+		DDA3937_RS15625	0.11	-1.3
3,578,675	-		DDA3937_RS15625	0.11	+0.8
3,578,675	-		DDA3937_RS15625	0.11	+0.6
3,578,675	-		DDA3937_RS15625	0.11	-1.3
3,578,675	-		DDA3937_RS15625	0.11	-0.8
3,578,675	-		DDA3937_RS15625	0.11	-1.3
3,578,675	-		DDA3937_RS15625	0.11	-1.7
3,578,675	-		DDA3937_RS15625	0.11	-0.8
3,578,675	-		DDA3937_RS15625	0.11	-0.5
3,578,696	+		DDA3937_RS15625	0.12	+2.0
3,578,696	+		DDA3937_RS15625	0.12	-0.7
3,578,696	+		DDA3937_RS15625	0.12	+0.0
3,578,697	-		DDA3937_RS15625	0.12	+1.8
3,578,716	+		DDA3937_RS15625	0.13	-1.0
3,578,716	+		DDA3937_RS15625	0.13	-0.4
3,578,729	-		DDA3937_RS15625	0.14	-2.0
3,578,754	+		DDA3937_RS15625	0.16	-2.2
3,578,832	-		DDA3937_RS15625	0.20	-0.7
3,578,955	+		DDA3937_RS15625	0.28	-1.3
3,578,956	-		DDA3937_RS15625	0.28	+1.6
3,578,957	+		DDA3937_RS15625	0.28	-0.6
3,578,958	-		DDA3937_RS15625	0.28	-1.4
3,579,074	+		DDA3937_RS15625	0.35	-0.7
3,579,074	+		DDA3937_RS15625	0.35	-1.7
3,579,108	+		DDA3937_RS15625	0.37	-1.6
3,579,117	-		DDA3937_RS15625	0.38	+0.8
3,579,171	+		DDA3937_RS15625	0.41	-1.7
3,579,171	+		DDA3937_RS15625	0.41	-0.3
3,579,172	-		DDA3937_RS15625	0.41	-1.6
3,579,173	+		DDA3937_RS15625	0.41	-2.0
3,579,173	+		DDA3937_RS15625	0.41	+0.6
3,579,173	+		DDA3937_RS15625	0.41	-1.8
3,579,174	-		DDA3937_RS15625	0.41	+0.2
3,579,174	-		DDA3937_RS15625	0.41	-0.7
3,579,174	-		DDA3937_RS15625	0.41	+0.9
3,579,174	-		DDA3937_RS15625	0.41	-0.4
3,579,174	-		DDA3937_RS15625	0.41	+1.1
3,579,174	-		DDA3937_RS15625	0.41	+3.7
3,579,179	+		DDA3937_RS15625	0.41	+0.1
3,579,180	-		DDA3937_RS15625	0.41	+1.3
3,579,180	-		DDA3937_RS15625	0.41	+0.4
3,579,180	-		DDA3937_RS15625	0.41	+1.0
3,579,180	-		DDA3937_RS15625	0.41	-0.4
3,579,254	+		DDA3937_RS15625	0.46	-2.3
3,579,254	+		DDA3937_RS15625	0.46	-0.5
3,579,255	-		DDA3937_RS15625	0.46	+0.6
3,579,255	-		DDA3937_RS15625	0.46	-0.4
3,579,258	+		DDA3937_RS15625	0.46	-0.9
3,579,258	+		DDA3937_RS15625	0.46	+1.9
3,579,259	-		DDA3937_RS15625	0.46	+0.4
3,579,259	-		DDA3937_RS15625	0.46	-0.6
3,579,285	-		DDA3937_RS15625	0.48	-0.7
3,579,296	+		DDA3937_RS15625	0.48	+1.8
3,579,297	-		DDA3937_RS15625	0.49	+0.8
3,579,317	+		DDA3937_RS15625	0.50	+0.4
3,579,317	+		DDA3937_RS15625	0.50	+2.6
3,579,317	+		DDA3937_RS15625	0.50	-1.3
3,579,317	+		DDA3937_RS15625	0.50	-1.1
3,579,317	+		DDA3937_RS15625	0.50	-0.1
3,579,317	+		DDA3937_RS15625	0.50	-1.2
3,579,318	-		DDA3937_RS15625	0.50	-0.6
3,579,318	-		DDA3937_RS15625	0.50	+0.8
3,579,318	-		DDA3937_RS15625	0.50	-0.7
3,579,318	-		DDA3937_RS15625	0.50	+0.7
3,579,318	-		DDA3937_RS15625	0.50	+0.0
3,579,357	+		DDA3937_RS15625	0.52	-2.2
3,579,357	+		DDA3937_RS15625	0.52	-1.1
3,579,461	+		DDA3937_RS15625	0.58	+0.3
3,579,461	+		DDA3937_RS15625	0.58	-0.0
3,579,461	+		DDA3937_RS15625	0.58	-0.3
3,579,461	+		DDA3937_RS15625	0.58	-1.2
3,579,461	+		DDA3937_RS15625	0.58	+1.5
3,579,461	+		DDA3937_RS15625	0.58	-0.6
3,579,462	-		DDA3937_RS15625	0.59	-1.3
3,579,480	+		DDA3937_RS15625	0.60	+1.3
3,579,481	-		DDA3937_RS15625	0.60	-0.8
3,579,481	-		DDA3937_RS15625	0.60	+0.9
3,579,529	-				+0.0
3,579,542	+		DDA3937_RS15625	0.63	-1.8
3,579,614	+				-1.3
3,579,614	+		DDA3937_RS15625	0.68	+2.0
3,579,614	+		DDA3937_RS15625	0.68	+1.1
3,579,614	+		DDA3937_RS15625	0.68	-0.4
3,579,614	+		DDA3937_RS15625	0.68	-0.2
3,579,614	+		DDA3937_RS15625	0.68	-0.6
3,579,615	-		DDA3937_RS15625	0.68	-0.6
3,579,615	-		DDA3937_RS15625	0.68	+1.5
3,579,615	-		DDA3937_RS15625	0.68	+0.2
3,579,615	-		DDA3937_RS15625	0.68	+0.6
3,579,615	-		DDA3937_RS15625	0.68	-0.5
3,579,626	+		DDA3937_RS15625	0.68	-1.1
3,579,626	+		DDA3937_RS15625	0.68	+1.6
3,579,626	+		DDA3937_RS15625	0.68	+0.0
3,579,627	-		DDA3937_RS15625	0.68	+0.8
3,579,627	-		DDA3937_RS15625	0.68	-1.0
3,579,627	-		DDA3937_RS15625	0.68	-1.2
3,579,627	-		DDA3937_RS15625	0.68	-1.9
3,579,638	+		DDA3937_RS15625	0.69	-0.6
3,579,649	-		DDA3937_RS15625	0.70	-2.0
3,579,668	+		DDA3937_RS15625	0.71	-0.6
3,579,668	+		DDA3937_RS15625	0.71	-0.7
3,579,669	-		DDA3937_RS15625	0.71	-1.3
3,579,669	-		DDA3937_RS15625	0.71	-0.1
3,579,696	+		DDA3937_RS15625	0.73	-0.3
3,579,696	+		DDA3937_RS15625	0.73	-0.2
3,579,696	+		DDA3937_RS15625	0.73	+0.4
3,579,696	+		DDA3937_RS15625	0.73	-1.6
3,579,696	+		DDA3937_RS15625	0.73	+0.4
3,579,733	+		DDA3937_RS15625	0.75	-0.8
3,579,734	-		DDA3937_RS15625	0.75	-1.1
3,579,831	+		DDA3937_RS15625	0.81	-0.9
3,579,837	+		DDA3937_RS15625	0.81	+0.4
3,579,837	+		DDA3937_RS15625	0.81	+0.1
3,579,837	+		DDA3937_RS15625	0.81	+0.4
3,579,837	+		DDA3937_RS15625	0.81	+0.1
3,579,837	+		DDA3937_RS15625	0.81	-0.2
3,579,838	-		DDA3937_RS15625	0.81	-0.5
3,579,838	-		DDA3937_RS15625	0.81	+1.4
3,579,838	-		DDA3937_RS15625	0.81	-2.2
3,579,838	-		DDA3937_RS15625	0.81	-1.0
3,579,838	-		DDA3937_RS15625	0.81	-0.7
3,579,838	-		DDA3937_RS15625	0.81	-2.0
3,579,838	-		DDA3937_RS15625	0.81	+0.2
3,579,849	+		DDA3937_RS15625	0.82	+1.3
3,579,849	+		DDA3937_RS15625	0.82	-0.2
3,579,849	+		DDA3937_RS15625	0.82	-0.4
3,579,905	-		DDA3937_RS15625	0.85	-0.3
3,579,905	-		DDA3937_RS15625	0.85	-2.3
3,579,960	+		DDA3937_RS15625	0.89	+1.0
3,579,960	+				+0.4
3,579,993	+				+0.4
3,579,994	-				-1.2
3,579,996	+				-0.9
3,579,996	+				+2.3
3,579,997	-				-0.2
3,579,997	-				-1.4
3,580,139	+				+0.1
3,580,146	+				-0.4
3,580,159	+				-0.1
3,580,160	-				-0.4
3,580,167	+				+0.7
3,580,167	+				-0.9
3,580,169	+				-0.8
3,580,170	-				-0.5
3,580,177	+				+0.2
3,580,177	+				-2.2
3,580,178	-				-1.1
3,580,178	-				-0.1
3,580,217	+				-0.4
3,580,225	+				-0.9
3,580,225	+				+0.4
3,580,225	+				+1.5
3,580,225	+				-1.0
3,580,225	+				+0.8
3,580,225	+				+2.2
3,580,225	+				+0.9
3,580,225	+				-2.1
3,580,226	-				-1.8
3,580,226	-				-3.1
3,580,226	-				-0.2
3,580,226	-				-1.5
3,580,231	+				+0.3
3,580,231	+				-0.6
3,580,231	+				-2.0
3,580,231	+				-0.6
3,580,231	+				-1.9
3,580,231	+				+0.2
3,580,231	+				+0.7
3,580,231	+				-0.4
3,580,232	-				+0.0
3,580,232	-				+0.2
3,580,232	-				-0.1
3,580,232	-				+0.6
3,580,232	-				-1.4
3,580,232	-				+2.4
3,580,232	-				+0.3
3,580,232	-				-2.4
3,580,232	-				-1.0
3,580,232	-				-1.5
3,580,232	-				-0.1
3,580,287	+				-0.0
3,580,313	+				-1.2
3,580,314	-				+0.3
3,580,314	-				+0.8
3,580,314	-				+0.4
3,580,363	+		DDA3937_RS15630	0.12	-1.3
3,580,364	-		DDA3937_RS15630	0.12	-2.4
3,580,433	+		DDA3937_RS15630	0.18	+0.5
3,580,433	+		DDA3937_RS15630	0.18	+0.9
3,580,433	+		DDA3937_RS15630	0.18	+3.1
3,580,434	-		DDA3937_RS15630	0.18	-0.9
3,580,434	-		DDA3937_RS15630	0.18	-1.0
3,580,434	-		DDA3937_RS15630	0.18	-1.6
3,580,434	-		DDA3937_RS15630	0.18	-2.6
3,580,435	+		DDA3937_RS15630	0.18	+0.2
3,580,435	+		DDA3937_RS15630	0.18	-0.1
3,580,435	+		DDA3937_RS15630	0.18	+1.5
3,580,435	+		DDA3937_RS15630	0.18	-0.2
3,580,435	+		DDA3937_RS15630	0.18	-0.9
3,580,462	+		DDA3937_RS15630	0.21	+0.2
3,580,673	-		DDA3937_RS15630	0.40	+0.5
3,580,703	+		DDA3937_RS15630	0.43	-0.1
3,580,703	+		DDA3937_RS15630	0.43	+0.0
3,580,703	+		DDA3937_RS15630	0.43	-0.3
3,580,704	-		DDA3937_RS15630	0.43	+1.4
3,580,704	-		DDA3937_RS15630	0.43	-0.7
3,580,730	+		DDA3937_RS15630	0.45	-0.7
3,580,731	-		DDA3937_RS15630	0.45	+0.2
3,580,772	+		DDA3937_RS15630	0.49	+0.7
3,580,772	+		DDA3937_RS15630	0.49	+1.9
3,580,772	+		DDA3937_RS15630	0.49	+0.4
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