Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS14830

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,402,537	+		DDA3937_RS14825	0.58	-1.7
3,402,537	+		DDA3937_RS14825	0.58	-1.2
3,402,538	-		DDA3937_RS14825	0.58	+1.4
3,402,538	-		DDA3937_RS14825	0.58	+0.2
3,402,550	-		DDA3937_RS14825	0.59	-0.6
3,402,635	-		DDA3937_RS14825	0.66	-0.9
3,402,635	-				-1.4
3,402,635	-		DDA3937_RS14825	0.66	-0.8
3,402,644	+		DDA3937_RS14825	0.67	+1.0
3,402,644	+		DDA3937_RS14825	0.67	+4.6
3,402,645	-		DDA3937_RS14825	0.67	+1.0
3,402,645	-		DDA3937_RS14825	0.67	+0.4
3,402,645	-		DDA3937_RS14825	0.67	-0.3
3,402,733	-		DDA3937_RS14825	0.74	-0.4
3,402,733	-		DDA3937_RS14825	0.74	+0.5
3,402,794	+		DDA3937_RS14825	0.79	-0.6
3,402,794	+		DDA3937_RS14825	0.79	-1.6
3,402,794	+		DDA3937_RS14825	0.79	-0.9
3,402,794	+		DDA3937_RS14825	0.79	-0.8
3,402,795	-				+0.2
3,402,795	-		DDA3937_RS14825	0.79	-0.7
3,402,846	-		DDA3937_RS14825	0.83	+1.1
3,402,877	-		DDA3937_RS14825	0.86	-0.4
3,402,877	-		DDA3937_RS14825	0.86	-0.3
3,402,895	-		DDA3937_RS14825	0.87	+0.5
3,402,895	-		DDA3937_RS14825	0.87	+0.1
3,402,895	-		DDA3937_RS14825	0.87	+1.0
3,402,895	-		DDA3937_RS14825	0.87	+1.0
3,402,895	-		DDA3937_RS14825	0.87	-1.2
3,402,927	+		DDA3937_RS14825	0.90	+0.3
3,402,939	+				-2.0
3,402,991	-				-0.6
3,403,053	+				-1.7
3,403,053	+				-0.9
3,403,053	+				+0.6
3,403,054	-				-1.9
3,403,054	-				-1.6
3,403,054	-				+2.6
3,403,056	+				-2.0
3,403,056	+				-0.9
3,403,056	+				-1.2
3,403,056	+				-0.6
3,403,056	+				-0.0
3,403,056	+				-0.5
3,403,056	+				+0.6
3,403,067	+				-0.1
3,403,068	-				-0.0
3,403,130	-				-0.6
3,403,130	-				-0.1
3,403,145	+				-0.0
3,403,145	+				-1.0
3,403,146	-				+0.3
3,403,170	-				+0.4
3,403,295	+				-1.8
3,403,420	-				-1.8
3,403,442	-				+1.5
3,403,442	-				-0.2
3,403,485	+				-0.4
3,403,485	+				+1.9
3,403,485	+				+2.0
3,403,486	-				-0.0
3,403,486	-				+0.0
3,403,486	-				+0.2
3,403,486	-				-2.1
3,403,500	+				-0.6
3,403,566	+		DDA3937_RS14830	0.11	+0.3
3,403,567	-		DDA3937_RS14830	0.11	-0.5
3,403,737	+		DDA3937_RS14830	0.31	-1.1
3,403,737	+		DDA3937_RS14830	0.31	-2.0
3,403,737	+		DDA3937_RS14830	0.31	-0.7
3,403,738	-		DDA3937_RS14830	0.31	-0.0
3,403,779	+		DDA3937_RS14830	0.36	-2.2
3,403,889	+		DDA3937_RS14830	0.49	+1.1
3,403,890	-		DDA3937_RS14830	0.49	-1.3
3,403,890	-		DDA3937_RS14830	0.49	+0.7
3,403,890	-		DDA3937_RS14830	0.49	+0.5
3,403,890	-		DDA3937_RS14830	0.49	-1.2
3,403,953	+		DDA3937_RS14830	0.56	-0.4
3,403,985	-		DDA3937_RS14830	0.60	-0.2
3,404,031	+		DDA3937_RS14830	0.65	+0.6
3,404,031	+		DDA3937_RS14830	0.65	-0.6
3,404,031	+		DDA3937_RS14830	0.65	+0.6
3,404,031	+		DDA3937_RS14830	0.65	+0.7
3,404,032	-		DDA3937_RS14830	0.65	+0.8
3,404,191	+		DDA3937_RS14830	0.84	+2.1
3,404,191	+		DDA3937_RS14830	0.84	+0.7
3,404,192	-		DDA3937_RS14830	0.84	-0.3
3,404,192	-		DDA3937_RS14830	0.84	-1.4
3,404,192	-		DDA3937_RS14830	0.84	-3.0
3,404,298	+				-0.9
3,404,298	+				+0.5
3,404,298	+				-1.1
3,404,298	+				+0.0
3,404,298	+				-0.7
3,404,298	+				-1.1
3,404,298	+				-0.5
3,404,298	+				+1.5
3,404,298	+				+1.3
3,404,299	-				+1.2
3,404,299	-				-2.2
3,404,299	-				+0.2
3,404,299	-				+1.4
3,404,299	-				+0.6
3,404,299	-				+2.5
3,404,396	+				+0.2
3,404,396	+				+0.3
3,404,397	-				-0.7
3,404,397	-				-1.8
3,404,397	-				-0.3
3,404,509	+				-0.5
3,404,509	+				-0.0
3,404,509	+				+1.5
3,404,510	-				+1.2
3,404,585	+				-0.5
3,404,586	-				-2.2
3,404,586	-				-0.6
3,404,586	-				-0.7
3,404,586	-				+2.1
3,404,586	-				-0.2
3,404,586	-				-0.8
3,404,586	-				+0.4
3,404,603	-				+0.4
3,404,603	-				-0.7
3,404,625	-				-1.5
3,404,625	-				-0.7
3,404,776	+		DDA3937_RS14835	0.14	-0.8
3,404,776	+		DDA3937_RS14835	0.14	+1.4
3,404,777	-		DDA3937_RS14835	0.14	-0.3
3,404,827	+		DDA3937_RS14835	0.17	-1.5
3,404,828	-		DDA3937_RS14835	0.17	+0.6
3,404,828	-		DDA3937_RS14835	0.17	-2.6
3,404,828	-		DDA3937_RS14835	0.17	+0.8
3,404,828	-		DDA3937_RS14835	0.17	-1.2
3,404,828	-		DDA3937_RS14835	0.17	-0.0
3,405,067	+		DDA3937_RS14835	0.26	+1.0
3,405,079	-		DDA3937_RS14835	0.27	+0.1
3,405,094	-		DDA3937_RS14835	0.27	-0.2
3,405,094	-		DDA3937_RS14835	0.27	-0.0
3,405,133	+		DDA3937_RS14835	0.29	-0.0
3,405,133	+		DDA3937_RS14835	0.29	-1.3
3,405,133	+		DDA3937_RS14835	0.29	-0.1
3,405,174	-		DDA3937_RS14835	0.31	-0.9
3,405,179	+		DDA3937_RS14835	0.31	-1.2
3,405,179	+		DDA3937_RS14835	0.31	+0.4
3,405,179	+		DDA3937_RS14835	0.31	+0.5
3,405,179	+		DDA3937_RS14835	0.31	-1.5
3,405,179	+		DDA3937_RS14835	0.31	+0.2
3,405,179	+		DDA3937_RS14835	0.31	+1.1
3,405,179	+		DDA3937_RS14835	0.31	+0.2
3,405,180	-		DDA3937_RS14835	0.31	+0.5
3,405,180	-		DDA3937_RS14835	0.31	-1.2
3,405,180	-		DDA3937_RS14835	0.31	+1.1
3,405,180	-		DDA3937_RS14835	0.31	-0.9
3,405,180	-		DDA3937_RS14835	0.31	+0.7
3,405,180	-		DDA3937_RS14835	0.31	-1.4
3,405,180	-		DDA3937_RS14835	0.31	+0.9
3,405,180	-		DDA3937_RS14835	0.31	+0.2
3,405,186	+		DDA3937_RS14835	0.31	+0.4
3,405,187	-		DDA3937_RS14835	0.31	-2.0
3,405,287	+		DDA3937_RS14835	0.35	-2.5