Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS14805

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,397,357	-		DDA3937_RS14800	0.56	+0.2
3,397,467	-		DDA3937_RS14800	0.61	+0.5
3,397,467	-		DDA3937_RS14800	0.61	-0.5
3,397,467	-		DDA3937_RS14800	0.61	+0.5
3,397,475	+		DDA3937_RS14800	0.62	-1.2
3,397,475	+		DDA3937_RS14800	0.62	-2.1
3,397,475	+		DDA3937_RS14800	0.62	+1.3
3,397,475	+		DDA3937_RS14800	0.62	-0.2
3,397,476	-		DDA3937_RS14800	0.62	+0.9
3,397,476	-		DDA3937_RS14800	0.62	+0.4
3,397,476	-		DDA3937_RS14800	0.62	-2.9
3,397,476	-		DDA3937_RS14800	0.62	-0.1
3,397,476	-		DDA3937_RS14800	0.62	-1.3
3,397,476	-		DDA3937_RS14800	0.62	-1.1
3,397,479	+		DDA3937_RS14800	0.62	-0.8
3,397,479	+		DDA3937_RS14800	0.62	+0.0
3,397,479	+		DDA3937_RS14800	0.62	-1.6
3,397,691	+		DDA3937_RS14800	0.72	+0.1
3,397,691	+		DDA3937_RS14800	0.72	+0.6
3,397,691	+		DDA3937_RS14800	0.72	+0.0
3,397,691	+		DDA3937_RS14800	0.72	-1.5
3,397,692	-		DDA3937_RS14800	0.72	+0.9
3,397,692	-		DDA3937_RS14800	0.72	-0.4
3,397,692	-		DDA3937_RS14800	0.72	+1.1
3,397,811	+		DDA3937_RS14800	0.77	-0.2
3,397,812	-		DDA3937_RS14800	0.77	-0.3
3,397,812	-		DDA3937_RS14800	0.77	-0.7
3,397,812	-		DDA3937_RS14800	0.77	-0.1
3,397,887	+		DDA3937_RS14800	0.81	-2.1
3,397,888	-		DDA3937_RS14800	0.81	+0.1
3,397,898	-		DDA3937_RS14800	0.81	-1.2
3,397,898	-		DDA3937_RS14800	0.81	-0.8
3,397,969	-		DDA3937_RS14800	0.85	-2.2
3,397,969	-		DDA3937_RS14800	0.85	-0.3
3,397,969	-		DDA3937_RS14800	0.85	-0.6
3,397,969	-		DDA3937_RS14800	0.85	-0.6
3,397,969	-		DDA3937_RS14800	0.85	+0.1
3,398,030	+		DDA3937_RS14800	0.88	+1.0
3,398,030	+		DDA3937_RS14800	0.88	-0.3
3,398,031	-		DDA3937_RS14800	0.88	-1.1
3,398,060	+		DDA3937_RS14800	0.89	+0.3
3,398,060	+		DDA3937_RS14800	0.89	+1.1
3,398,063	+		DDA3937_RS14800	0.89	-1.9
3,398,063	+		DDA3937_RS14800	0.89	-0.6
3,398,063	+		DDA3937_RS14800	0.89	+0.1
3,398,063	+		DDA3937_RS14800	0.89	+0.3
3,398,063	+		DDA3937_RS14800	0.89	+1.4
3,398,063	+		DDA3937_RS14800	0.89	-1.9
3,398,063	+		DDA3937_RS14800	0.89	-0.7
3,398,064	-		DDA3937_RS14800	0.89	-0.7
3,398,064	-		DDA3937_RS14800	0.89	-0.9
3,398,064	-		DDA3937_RS14800	0.89	-1.6
3,398,064	-		DDA3937_RS14800	0.89	-0.5
3,398,088	-				+0.1
3,398,128	-				+1.0
3,398,128	-				-0.6
3,398,160	+				-0.6
3,398,161	-				-1.9
3,398,161	-				-1.3
3,398,161	-				-0.4
3,398,161	-				-0.4
3,398,161	-				-0.8
3,398,161	-				-1.2
3,398,181	-				-2.1
3,398,248	+				-0.2
3,398,295	+				+1.0
3,398,317	+				-0.3
3,398,319	+				-0.4
3,398,319	+				-0.9
3,398,319	+				+0.0
3,398,319	+				-0.4
3,398,319	+				+0.8
3,398,319	+				-0.2
3,398,319	+				-0.6
3,398,320	-				+0.4
3,398,320	-				-0.4
3,398,320	-				+0.3
3,398,320	-				-0.1
3,398,320	-				-1.2
3,398,320	-				+0.2
3,398,320	-				+0.1
3,398,320	-				-0.3
3,398,320	-				-1.1
3,398,320	-				+1.3
3,398,323	+				+0.0
3,398,323	+				+0.6
3,398,365	+				-0.4
3,398,553	+		DDA3937_RS14805	0.32	-1.9
3,398,553	+		DDA3937_RS14805	0.32	+0.2
3,398,553	+		DDA3937_RS14805	0.32	-0.8
3,398,553	+		DDA3937_RS14805	0.32	-0.5
3,398,553	+		DDA3937_RS14805	0.32	-3.0
3,398,554	-		DDA3937_RS14805	0.32	-1.2
3,398,643	+		DDA3937_RS14805	0.43	-0.6
3,398,643	+		DDA3937_RS14805	0.43	+0.9
3,398,643	+		DDA3937_RS14805	0.43	-1.6
3,398,643	+		DDA3937_RS14805	0.43	-1.9
3,398,644	-		DDA3937_RS14805	0.43	-0.1
3,398,644	-		DDA3937_RS14805	0.43	-0.1
3,398,644	-		DDA3937_RS14805	0.43	-0.4
3,398,662	-		DDA3937_RS14805	0.45	-0.2
3,398,719	+		DDA3937_RS14805	0.52	-0.4
3,398,722	-		DDA3937_RS14805	0.52	-0.6
3,398,786	-		DDA3937_RS14805	0.60	-0.1
3,398,786	-		DDA3937_RS14805	0.60	-0.7
3,398,839	+		DDA3937_RS14805	0.67	-1.1
3,398,840	-		DDA3937_RS14805	0.67	-0.5
3,398,917	+		DDA3937_RS14805	0.76	-0.3
3,398,970	-		DDA3937_RS14805	0.83	-0.7
3,398,970	-		DDA3937_RS14805	0.83	-1.2
3,399,055	-				+0.3
3,399,106	+				-1.6
3,399,106	+				+0.4
3,399,106	+				-1.2
3,399,107	-				-0.1
3,399,107	-				-0.2
3,399,129	+				-2.1
3,399,129	+				-2.4
3,399,129	+				+1.9
3,399,129	+				+0.9
3,399,129	+				-0.2
3,399,129	+				-1.6
3,399,130	-				+0.1
3,399,130	-				+0.7
3,399,130	-				+0.8
3,399,130	-				-0.4
3,399,130	-				+1.1
3,399,130	-				+0.6
3,399,130	-				+2.8
3,399,130	-				+0.6
3,399,130	-				-0.1
3,399,130	-				-0.4
3,399,172	+				+0.3
3,399,173	-				+0.5
3,399,181	+				+0.8
3,399,181	+				+0.5
3,399,181	+				+0.4
3,399,181	+				-0.5
3,399,182	-				-1.5
3,399,182	-				-0.1
3,399,182	-				-1.2
3,399,182	-				+0.9
3,399,183	+				-0.9
3,399,183	+				-2.3
3,399,183	+				-0.4
3,399,183	+				-3.1
3,399,183	+				-1.8
3,399,183	+				+0.8
3,399,183	+				+0.5
3,399,184	-				+1.4
3,399,184	-				+2.1
3,399,184	-				-0.8
3,399,184	-				+0.2
3,399,184	-				-0.2
3,399,184	-				+0.6
3,399,184	-				-0.4
3,399,184	-				+0.4
3,399,184	-				-0.8
3,399,184	-				+1.2
3,399,184	-				+0.1
3,399,184	-				+0.5
3,399,184	-				+0.6
3,399,247	-				+0.3
3,399,286	+				-1.4
3,399,286	+				-2.0
3,399,287	-				-2.0
3,399,287	-				-1.9
3,399,287	-				+1.0
3,399,303	+				-0.3
3,399,304	-				+0.2
3,399,335	+				-2.2
3,399,386	-				+1.5
3,399,446	+				-0.4
3,399,447	-				+0.5
3,399,465	+				-0.5
3,399,466	-				-0.1
3,399,478	+				+0.7
3,399,481	+				-0.3
3,399,481	+				+0.5
3,399,481	+				+1.0
3,399,481	+				+0.4
3,399,482	-				-2.7
3,399,482	-				-1.3
3,399,482	-				+1.6
3,399,482	-				-1.1
3,399,482	-				-1.4
3,399,483	+				-1.3
3,399,484	-				+1.0
3,399,484	-				-0.8
3,399,484	-				-1.8
3,399,484	-				-0.0
3,399,484	-				-1.3
3,399,535	+				-0.0
3,399,535	+				-1.7
3,399,568	+				-1.4
3,399,568	+				-1.6
3,399,568	+				+0.6
3,399,568	+				+1.4
3,399,569	-				-0.2
3,399,569	-				-0.3
3,399,569	-				+0.3
3,399,569	-				-1.0
3,399,569	-				-0.6
3,399,569	-				-1.6
3,399,597	+				-0.5
3,399,598	-				+1.4
3,399,620	-				-0.3
3,399,620	-				+1.0
3,399,628	+				+0.2
3,399,629	-				-1.9
3,399,629	-				-0.6
3,399,634	+				+0.6
3,399,634	+				+1.7
3,399,634	+				-0.1
3,399,634	+				+0.4
3,399,634	+				+1.0
3,399,635	-				-0.0
3,399,635	-				-0.7
3,399,635	-				+0.5
3,399,638	+				-0.2
3,399,639	-				-1.0
3,399,639	-				-2.5
3,399,646	+				-1.0
3,399,652	-				-1.1
3,399,691	-				-1.0
3,399,745	-				-0.8
3,399,759	+				-1.2
3,399,759	+				-1.0
3,399,759	+				+1.2
3,399,759	+				-2.1
3,399,759	+				-1.2
3,399,759	+				-1.2
3,399,760	-				+0.0
3,399,760	-				-0.5
3,399,760	-				-0.6
3,399,760	-				-2.0
3,399,760	-				-1.3
3,399,770	+				-3.4
3,399,771	-				-0.6
3,399,771	-				-0.5
3,399,771	-				-0.0
3,399,771	-				-0.3
3,399,773	+				-0.0
3,399,774	-				-0.9
3,399,777	-				-1.1
3,399,790	-				-0.3
3,399,790	-				-1.4
3,399,822	+				-0.8
3,399,823	-				+1.4
3,399,826	+				-1.9
3,399,827	-				-1.2
3,399,827	-				-1.4
3,399,839	+				+1.4
3,399,839	+				+0.8
3,399,839	+				-0.5
3,399,839	+				+0.7
3,399,843	-				-1.0
3,399,857	+				-0.2
3,399,857	+				+0.3
3,399,857	+				+0.5
3,399,857	+				+0.6
3,399,858	-				-0.1
3,399,858	-				-0.9
3,399,858	-				-0.9
3,399,858	-				-0.6
3,399,858	-				-0.5
3,399,858	-				-0.9
3,399,858	-				+2.8
3,399,958	-				+1.7
3,399,958	-				-1.6
3,399,969	-				+1.2
3,399,969	-				-1.4
3,399,969	-				-0.5
3,399,986	+				-0.5
3,399,986	+				-0.8
3,399,986	+				-0.6
3,399,986	+				-1.1
3,399,987	-				-0.5
3,399,987	-				+1.3
3,399,987	-				+0.1
3,400,009	+				-0.4
3,400,009	+				+0.7
3,400,010	-				+0.1
3,400,010	-				-2.4
3,400,010	-				-1.7
3,400,010	-				-1.2
3,400,029	+				-0.1
3,400,030	-				-0.0
3,400,034	-				-0.6
3,400,034	-				-0.4
3,400,034	-				-0.0
3,400,034	-				+0.8
3,400,063	-				+2.3
3,400,090	+				-1.2
3,400,091	-				-0.0
3,400,092	+				-1.0
3,400,092	+				-2.2
3,400,092	+				-0.2
3,400,092	+				+0.2
3,400,093	-				+1.7
3,400,093	-				-0.4
3,400,093	-				-1.9
3,400,093	-				-0.3
3,400,093	-				+0.2
3,400,093	-				-1.0
3,400,093	-				+2.8
3,400,108	+				-1.0
3,400,109	-				-0.0
3,400,109	-				-0.6
3,400,109	-				-1.9
3,400,109	-				+0.7