Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS12590

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,865,154	-		DDA3937_RS12585	0.44	-0.7
2,865,158	+		DDA3937_RS12585	0.44	+0.5
2,865,159	-		DDA3937_RS12585	0.44	+1.5
2,865,201	+		DDA3937_RS12585	0.48	-1.1
2,865,201	+		DDA3937_RS12585	0.48	+0.7
2,865,202	-		DDA3937_RS12585	0.48	+2.0
2,865,202	-		DDA3937_RS12585	0.48	+0.7
2,865,202	-		DDA3937_RS12585	0.48	-0.0
2,865,202	-		DDA3937_RS12585	0.48	-0.4
2,865,222	-		DDA3937_RS12585	0.50	+1.2
2,865,671	+				-0.9
2,865,671	+				-0.0
2,865,672	-				+0.1
2,865,759	+				-0.3
2,865,759	+				-0.0
2,865,759	+				+0.9
2,865,759	+				-1.9
2,865,759	+				-0.5
2,865,760	-				-0.8
2,865,760	-				+0.7
2,865,760	-				+0.3
2,865,760	-				-0.0
2,865,760	-				-0.6
2,865,760	-				-1.6
2,865,760	-				+0.5
2,865,760	-				-0.1
2,865,760	-				+0.3
2,865,760	-				-0.3
2,865,760	-				-1.3
2,865,761	+				+0.3
2,865,761	+				-0.7
2,865,761	+				+0.7
2,865,761	+				-0.4
2,865,761	+				-0.9
2,865,761	+				+0.2
2,865,761	+				+1.2
2,865,761	+				-0.1
2,865,761	+				-1.3
2,865,762	-				-0.3
2,865,762	-				+1.2
2,865,762	-				-0.1
2,865,762	-				-1.4
2,865,762	-				-1.2
2,865,762	-				-0.4
2,865,783	+				+0.4
2,865,819	+				+0.0
2,865,819	+				-1.6
2,865,819	+				-0.1
2,865,820	-				+0.7
2,865,820	-				+0.4
2,865,820	-				+0.5
2,865,820	-				+0.0
2,865,820	-				+0.4
2,865,820	-				+0.2
2,865,857	+				-0.3
2,865,857	+				-0.9
2,865,859	+				-1.9
2,865,860	-				-0.4
2,865,868	+				+0.5
2,865,869	-				-0.9
2,865,903	+				-0.5
2,865,908	-				-0.7
2,865,963	+				+5.3
2,865,963	+				-0.2
2,865,963	+				-0.3
2,865,963	+				+0.3
2,865,963	+				-0.1
2,865,963	+				+0.7
2,865,964	-				-1.3
2,865,964	-				-2.1
2,865,964	-				-0.9
2,865,964	-				-0.4
2,865,975	-				-1.6
2,865,994	+				+1.7
2,865,995	-				-1.2
2,866,005	+				-0.7
2,866,023	+				-1.2
2,866,023	+				+0.4
2,866,023	+				-0.8
2,866,023	+				-0.5
2,866,059	+				-1.1
2,866,060	-				-0.9
2,866,076	+				-3.3
2,866,104	+				-0.2
2,866,104	+				-1.3
2,866,104	+				-1.3
2,866,104	+				+2.2
2,866,104	+				-0.3
2,866,104	+				+0.1
2,866,104	+				-1.0
2,866,104	+				-1.6
2,866,104	+				+0.1
2,866,105	-				-2.4
2,866,105	-				-0.2
2,866,105	-				-1.3
2,866,105	-				-1.4
2,866,105	-				-1.3
2,866,105	-				-0.1
2,866,105	-				-0.6
2,866,106	+				-0.9
2,866,106	+				+0.2
2,866,106	+				-0.1
2,866,107	-				-0.6
2,866,107	-				-1.4
2,866,121	+				-0.9
2,866,151	-				-0.9
2,866,158	-				+0.1
2,866,181	+		DDA3937_RS12590	0.13	-1.1
2,866,207	-		DDA3937_RS12590	0.18	-0.3
2,866,207	-				-1.6
2,866,240	+		DDA3937_RS12590	0.25	-1.2
2,866,240	+		DDA3937_RS12590	0.25	-0.2
2,866,298	+		DDA3937_RS12590	0.38	-2.0
2,866,298	+		DDA3937_RS12590	0.38	+0.1
2,866,298	+		DDA3937_RS12590	0.38	+0.1
2,866,298	+		DDA3937_RS12590	0.38	-1.0
2,866,298	+		DDA3937_RS12590	0.38	-1.9
2,866,298	+		DDA3937_RS12590	0.38	-1.7
2,866,298	+		DDA3937_RS12590	0.38	-0.3
2,866,299	-		DDA3937_RS12590	0.38	-2.6
2,866,299	-		DDA3937_RS12590	0.38	-1.6
2,866,346	+		DDA3937_RS12590	0.48	-1.6
2,866,349	+		DDA3937_RS12590	0.49	-0.4
2,866,349	+				+0.3
2,866,350	-		DDA3937_RS12590	0.49	-0.7
2,866,547	+				-0.6
2,866,548	-				-1.0
2,866,599	-				-0.3
2,866,630	+				+2.2
2,866,630	+				-0.2
2,866,653	-				+0.4
2,866,653	-				-0.3
2,866,655	-				+0.4
2,866,655	-				-0.3
2,866,655	-				-0.6
2,866,662	+				-0.2
2,866,663	-				+0.7
2,866,678	+				+0.2
2,866,678	+				-1.0
2,866,678	+				+2.0
2,866,678	+				+1.9
2,866,678	+				+1.3
2,866,679	-				+0.9
2,866,679	-				+0.3
2,866,679	-				+1.7
2,866,679	-				+0.2
2,866,679	-				-0.4
2,866,679	-				-1.7
2,866,679	-				-1.9
2,866,680	+				-0.5
2,866,680	+				-1.4
2,866,680	+				-1.2
2,866,680	+				+1.0
2,866,680	+				+2.5
2,866,680	+				-0.7
2,866,680	+				+0.2
2,866,680	+				-1.7
2,866,680	+				+0.1
2,866,680	+				-1.2
2,866,681	-				-0.4
2,866,681	-				-0.5
2,866,681	-				-0.1
2,866,681	-				-1.3
2,866,681	-				-0.4
2,866,681	-				-2.0
2,866,681	-				-1.6
2,866,682	+				-0.8
2,866,682	+				-0.3
2,866,682	+				+1.3
2,866,682	+				+0.0
2,866,683	-				-0.9
2,866,683	-				-0.3
2,866,683	-				+1.4
2,866,683	-				+0.1
2,866,683	-				-1.3
2,866,683	-				-2.1
2,866,683	-				-0.4
2,866,691	+				+0.7
2,866,691	+				+0.6
2,866,691	+				-1.1
2,866,692	-				+0.4
2,866,720	-				-0.0
2,866,734	+				-1.5
2,866,735	-				-0.7
2,866,749	+				-1.6
2,866,749	+				-0.3
2,866,841	+				+0.9
2,866,841	+				+0.5
2,866,841	+				-0.3
2,866,841	+				+1.4
2,866,842	-				-0.2
2,866,842	-				-0.6
2,866,842	-				-1.3
2,866,842	-				+1.1
2,866,842	-				+1.3
2,866,842	-				+2.7
2,866,842	-				-0.7
2,866,845	+				-1.9
2,866,882	-				-0.8
2,866,882	-				-2.3
2,866,882	-				-0.3
2,866,882	-				+1.3
2,866,893	-				+1.5
2,866,893	-				-0.5
2,866,893	-				-1.1
2,866,971	+				+0.1
2,866,974	+				-2.4
2,866,974	+				+0.1
2,866,974	+				+0.3
2,866,974	+				-1.6
2,866,974	+				+2.3
2,866,974	+				-0.6
2,866,974	+				+0.9
2,866,974	+				+0.1
2,866,974	+				-0.6
2,866,974	+				-0.9
2,866,974	+				+0.2
2,866,975	-				+1.1
2,866,975	-				-0.5
2,866,975	-				+1.9
2,866,975	-				+0.0
2,866,975	-				+1.3
2,866,975	-				+1.4
2,866,975	-				-0.9
2,866,975	-				-1.0
2,866,975	-				-0.5
2,866,980	-				+1.1
2,867,012	+				-0.3
2,867,013	-				-2.3
2,867,028	+				-0.9
2,867,045	+				-0.9
2,867,077	+		DDA3937_RS12595	0.11	+0.7
2,867,077	+		DDA3937_RS12595	0.11	+1.4
2,867,078	-		DDA3937_RS12595	0.12	-0.1
2,867,081	-		DDA3937_RS12595	0.12	+0.7
2,867,110	+		DDA3937_RS12595	0.19	+0.7
2,867,114	-		DDA3937_RS12595	0.20	-0.6
2,867,120	+		DDA3937_RS12595	0.21	-0.5
2,867,121	-		DDA3937_RS12595	0.21	+0.8
2,867,123	+		DDA3937_RS12595	0.22	+0.4
2,867,124	-		DDA3937_RS12595	0.22	-0.4
2,867,147	-		DDA3937_RS12595	0.27	-0.3
2,867,170	+		DDA3937_RS12595	0.33	+3.4
2,867,170	+		DDA3937_RS12595	0.33	-0.3
2,867,171	-		DDA3937_RS12595	0.33	-0.7
2,867,171	-		DDA3937_RS12595	0.33	+0.2
2,867,197	+		DDA3937_RS12595	0.39	+3.4
2,867,197	+		DDA3937_RS12595	0.39	+0.7
2,867,236	+		DDA3937_RS12595	0.48	+1.1
2,867,236	+		DDA3937_RS12595	0.48	-0.7
2,867,248	+		DDA3937_RS12595	0.50	-1.9
2,867,249	-		DDA3937_RS12595	0.51	+0.0
2,867,269	+		DDA3937_RS12595	0.55	+1.1
2,867,269	+		DDA3937_RS12595	0.55	+1.2
2,867,269	+		DDA3937_RS12595	0.55	-1.3
2,867,270	-		DDA3937_RS12595	0.55	-0.7
2,867,270	-		DDA3937_RS12595	0.55	-0.8
2,867,291	+		DDA3937_RS12595	0.60	+1.4
2,867,291	+		DDA3937_RS12595	0.60	+0.6
2,867,291	+		DDA3937_RS12595	0.60	-0.4
2,867,292	-		DDA3937_RS12595	0.61	-0.6
2,867,292	-		DDA3937_RS12595	0.61	-0.6
2,867,297	+		DDA3937_RS12595	0.62	+1.3
2,867,347	+		DDA3937_RS12595	0.73	+2.0
2,867,347	+		DDA3937_RS12595	0.73	+0.4
2,867,350	+				+0.7
2,867,350	+				+0.7
2,867,350	+		DDA3937_RS12595	0.74	-1.3
2,867,351	-		DDA3937_RS12595	0.74	+1.1
2,867,351	-		DDA3937_RS12595	0.74	-1.5
2,867,351	-		DDA3937_RS12595	0.74	-3.1
2,867,351	-		DDA3937_RS12595	0.74	+0.8
2,867,421	-				+0.7
2,867,553	+				-1.6
2,867,554	-				-1.0
2,867,554	-				+1.0
2,867,554	-				+0.5
2,867,559	+				+0.5
2,867,560	-				-0.4
2,867,568	-				+0.4
2,867,568	-				-2.1
2,867,568	-				+1.0
2,867,568	-				-1.1