Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS09640

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,172,701	+		DDA3937_RS09635	0.16	-0.1
2,172,701	+		DDA3937_RS09635	0.16	-0.1
2,172,702	-		DDA3937_RS09635	0.16	-0.1
2,172,702	-		DDA3937_RS09635	0.16	-0.6
2,172,702	-				-0.3
2,172,702	-		DDA3937_RS09635	0.16	-0.5
2,172,702	-		DDA3937_RS09635	0.16	-0.3
2,172,811	-		DDA3937_RS09635	0.28	-2.3
2,172,830	+		DDA3937_RS09635	0.30	-0.3
2,172,892	+		DDA3937_RS09635	0.37	+0.7
2,172,892	+		DDA3937_RS09635	0.37	-2.3
2,172,967	-		DDA3937_RS09635	0.45	-0.2
2,172,987	+		DDA3937_RS09635	0.47	-0.1
2,173,064	-		DDA3937_RS09635	0.56	-1.3
2,173,064	-		DDA3937_RS09635	0.56	+0.4
2,173,113	+		DDA3937_RS09635	0.61	-2.5
2,173,113	+		DDA3937_RS09635	0.61	-0.9
2,173,113	+		DDA3937_RS09635	0.61	-1.4
2,173,113	+		DDA3937_RS09635	0.61	+0.5
2,173,113	+		DDA3937_RS09635	0.61	+0.6
2,173,113	+		DDA3937_RS09635	0.61	-1.0
2,173,113	+		DDA3937_RS09635	0.61	-2.1
2,173,113	+		DDA3937_RS09635	0.61	-0.7
2,173,113	+		DDA3937_RS09635	0.61	-1.2
2,173,114	-		DDA3937_RS09635	0.61	-1.5
2,173,114	-		DDA3937_RS09635	0.61	-1.6
2,173,114	-		DDA3937_RS09635	0.61	-0.5
2,173,114	-		DDA3937_RS09635	0.61	-0.8
2,173,126	+		DDA3937_RS09635	0.63	-2.0
2,173,126	+		DDA3937_RS09635	0.63	+0.4
2,173,126	+		DDA3937_RS09635	0.63	-1.3
2,173,127	-		DDA3937_RS09635	0.63	-2.1
2,173,127	-		DDA3937_RS09635	0.63	+0.0
2,173,127	-		DDA3937_RS09635	0.63	-0.8
2,173,256	+		DDA3937_RS09635	0.77	-0.6
2,173,257	-		DDA3937_RS09635	0.77	+1.1
2,173,274	-		DDA3937_RS09635	0.79	-0.3
2,173,309	-		DDA3937_RS09635	0.83	+0.9
2,173,309	-		DDA3937_RS09635	0.83	-0.1
2,173,328	+		DDA3937_RS09635	0.85	-1.6
2,173,329	-		DDA3937_RS09635	0.85	-0.7
2,173,329	-		DDA3937_RS09635	0.85	+1.3
2,173,329	-		DDA3937_RS09635	0.85	+0.3
2,173,351	+		DDA3937_RS09635	0.87	-2.6
2,173,351	+		DDA3937_RS09635	0.87	+0.2
2,173,351	+		DDA3937_RS09635	0.87	+1.3
2,173,352	-		DDA3937_RS09635	0.88	-0.3
2,173,352	-		DDA3937_RS09635	0.88	+1.1
2,173,352	-				+0.7
2,173,352	-		DDA3937_RS09635	0.88	+1.4
2,173,360	+		DDA3937_RS09635	0.88	-0.0
2,173,360	+		DDA3937_RS09635	0.88	+0.9
2,173,360	+		DDA3937_RS09635	0.88	-2.6
2,173,361	-		DDA3937_RS09635	0.89	-0.2
2,173,487	-				+0.9
2,173,519	+				+1.0
2,173,604	+				-2.1
2,173,605	-				+0.5
2,173,648	+				-0.2
2,173,731	+		DDA3937_RS09640	0.12	-2.1
2,173,732	-		DDA3937_RS09640	0.12	-0.7
2,173,742	+		DDA3937_RS09640	0.13	-0.8
2,173,742	+		DDA3937_RS09640	0.13	-0.5
2,173,743	-		DDA3937_RS09640	0.13	-0.9
2,173,797	-		DDA3937_RS09640	0.18	+0.7
2,173,810	+		DDA3937_RS09640	0.19	+0.7
2,173,811	-		DDA3937_RS09640	0.19	-0.3
2,173,811	-		DDA3937_RS09640	0.19	-1.3
2,173,814	+		DDA3937_RS09640	0.19	+0.1
2,173,814	+		DDA3937_RS09640	0.19	-1.6
2,173,814	+		DDA3937_RS09640	0.19	-0.9
2,173,815	-		DDA3937_RS09640	0.19	-1.6
2,173,815	-		DDA3937_RS09640	0.19	-1.3
2,173,815	-		DDA3937_RS09640	0.19	-0.1
2,173,815	-		DDA3937_RS09640	0.19	+1.7
2,173,817	+		DDA3937_RS09640	0.19	-2.6
2,173,818	-		DDA3937_RS09640	0.19	-0.9
2,173,935	+		DDA3937_RS09640	0.30	-2.0
2,173,936	-		DDA3937_RS09640	0.30	+2.0
2,173,963	+		DDA3937_RS09640	0.32	-1.2
2,173,964	-		DDA3937_RS09640	0.32	-1.6
2,173,997	+		DDA3937_RS09640	0.35	-0.6
2,173,997	+		DDA3937_RS09640	0.35	-0.5
2,173,997	+				-0.3
2,173,997	+		DDA3937_RS09640	0.35	-0.8
2,173,998	-		DDA3937_RS09640	0.35	-0.7
2,173,998	-		DDA3937_RS09640	0.35	-1.4
2,173,998	-		DDA3937_RS09640	0.35	-1.2
2,173,998	-		DDA3937_RS09640	0.35	-0.5
2,174,009	+		DDA3937_RS09640	0.36	-0.1
2,174,009	+		DDA3937_RS09640	0.36	+0.0
2,174,009	+		DDA3937_RS09640	0.36	+0.5
2,174,009	+		DDA3937_RS09640	0.36	-1.2
2,174,009	+		DDA3937_RS09640	0.36	-1.3
2,174,010	-		DDA3937_RS09640	0.36	-0.7
2,174,012	+		DDA3937_RS09640	0.36	+0.4
2,174,012	+		DDA3937_RS09640	0.36	+1.5
2,174,013	-		DDA3937_RS09640	0.36	-4.1
2,174,013	-		DDA3937_RS09640	0.36	+0.3
2,174,013	-		DDA3937_RS09640	0.36	-0.3
2,174,025	+		DDA3937_RS09640	0.37	+1.1
2,174,025	+		DDA3937_RS09640	0.37	-1.4
2,174,025	+		DDA3937_RS09640	0.37	-0.7
2,174,025	+		DDA3937_RS09640	0.37	+1.2
2,174,026	-		DDA3937_RS09640	0.38	-1.0
2,174,026	-		DDA3937_RS09640	0.38	+0.9
2,174,028	+				+2.0
2,174,065	-		DDA3937_RS09640	0.41	-0.9
2,174,065	-		DDA3937_RS09640	0.41	+1.4
2,174,249	+		DDA3937_RS09640	0.57	-0.3
2,174,249	+		DDA3937_RS09640	0.57	+0.2
2,174,249	+		DDA3937_RS09640	0.57	-1.0
2,174,250	-		DDA3937_RS09640	0.57	-0.7
2,174,265	+		DDA3937_RS09640	0.58	-2.9
2,174,266	-		DDA3937_RS09640	0.58	-0.7
2,174,266	-		DDA3937_RS09640	0.58	-0.2
2,174,266	-				+0.7
2,174,267	+		DDA3937_RS09640	0.58	-0.3
2,174,267	+				+0.7
2,174,267	+		DDA3937_RS09640	0.58	-0.7
2,174,267	+		DDA3937_RS09640	0.58	+3.5
2,174,268	-		DDA3937_RS09640	0.59	-1.8
2,174,268	-		DDA3937_RS09640	0.59	-0.9
2,174,296	+		DDA3937_RS09640	0.61	-1.6
2,174,375	+		DDA3937_RS09640	0.68	+1.0
2,174,375	+		DDA3937_RS09640	0.68	-1.1
2,174,502	+		DDA3937_RS09640	0.79	-2.2
2,174,502	+		DDA3937_RS09640	0.79	-0.0
2,174,503	-		DDA3937_RS09640	0.79	-1.2
2,174,503	-		DDA3937_RS09640	0.79	-1.3
2,174,503	-		DDA3937_RS09640	0.79	+0.4
2,174,504	+		DDA3937_RS09640	0.79	+0.2
2,174,585	+		DDA3937_RS09640	0.86	-1.1
2,174,586	-				-0.0
2,174,586	-		DDA3937_RS09640	0.86	-1.9
2,174,586	-		DDA3937_RS09640	0.86	+1.4
2,174,586	-		DDA3937_RS09640	0.86	-1.6
2,174,586	-		DDA3937_RS09640	0.86	+0.1
2,174,586	-		DDA3937_RS09640	0.86	+0.2
2,174,587	+		DDA3937_RS09640	0.86	-1.1
2,174,587	+		DDA3937_RS09640	0.86	-0.5
2,174,587	+		DDA3937_RS09640	0.86	-0.1
2,174,587	+		DDA3937_RS09640	0.86	-0.4
2,174,587	+		DDA3937_RS09640	0.86	-1.9
2,174,587	+		DDA3937_RS09640	0.86	+0.2
2,174,588	-		DDA3937_RS09640	0.86	-2.3
2,174,588	-		DDA3937_RS09640	0.86	-1.8
2,174,588	-		DDA3937_RS09640	0.86	-2.5
2,174,588	-		DDA3937_RS09640	0.86	-0.6
2,174,588	-		DDA3937_RS09640	0.86	-0.5
2,174,639	+				+0.4
2,174,688	-				-1.0
2,174,697	+				+0.6
2,174,697	+				-1.5
2,174,698	-				-1.9
2,174,698	-				-1.5
2,174,698	-				-1.5
2,174,818	+				-0.6
2,174,819	-				-0.1
2,174,832	-				+1.2
2,174,832	-				-0.7
2,174,952	+		DDA3937_RS09645	0.20	+1.3
2,174,953	-		DDA3937_RS09645	0.20	+1.4
2,174,953	-		DDA3937_RS09645	0.20	+0.2
2,174,972	+		DDA3937_RS09645	0.22	+1.3
2,174,972	+				+1.9
2,174,973	-		DDA3937_RS09645	0.22	-0.5
2,174,973	-		DDA3937_RS09645	0.22	-0.9
2,174,973	-		DDA3937_RS09645	0.22	-0.1
2,174,996	+		DDA3937_RS09645	0.25	-0.6
2,174,996	+		DDA3937_RS09645	0.25	+1.0
2,174,996	+		DDA3937_RS09645	0.25	-0.7
2,174,997	-		DDA3937_RS09645	0.25	-1.6
2,174,997	-		DDA3937_RS09645	0.25	+0.1
2,175,023	+		DDA3937_RS09645	0.27	-0.1
2,175,023	+		DDA3937_RS09645	0.27	+0.8
2,175,023	+		DDA3937_RS09645	0.27	+0.3
2,175,024	-		DDA3937_RS09645	0.28	-1.0
2,175,024	-		DDA3937_RS09645	0.28	+0.7
2,175,024	-		DDA3937_RS09645	0.28	-0.6
2,175,024	-		DDA3937_RS09645	0.28	-0.6
2,175,024	-		DDA3937_RS09645	0.28	+0.7
2,175,024	-		DDA3937_RS09645	0.28	+1.0
2,175,024	-		DDA3937_RS09645	0.28	-0.2
2,175,024	-		DDA3937_RS09645	0.28	-0.8
2,175,024	-		DDA3937_RS09645	0.28	-0.4
2,175,168	+		DDA3937_RS09645	0.43	-1.4
2,175,168	+		DDA3937_RS09645	0.43	+0.5
2,175,168	+		DDA3937_RS09645	0.43	+0.3
2,175,168	+		DDA3937_RS09645	0.43	+0.6
2,175,169	-		DDA3937_RS09645	0.43	-0.5
2,175,169	-		DDA3937_RS09645	0.43	+0.9
2,175,242	+		DDA3937_RS09645	0.51	-2.1
2,175,242	+		DDA3937_RS09645	0.51	-1.0
2,175,243	-		DDA3937_RS09645	0.51	+2.5
2,175,243	-		DDA3937_RS09645	0.51	-0.7
2,175,243	-		DDA3937_RS09645	0.51	-0.3
2,175,326	+		DDA3937_RS09645	0.60	-1.3
2,175,326	+		DDA3937_RS09645	0.60	-0.5
2,175,326	+		DDA3937_RS09645	0.60	+0.5
2,175,489	+		DDA3937_RS09645	0.78	-1.4
2,175,490	-		DDA3937_RS09645	0.78	-0.0
2,175,490	-		DDA3937_RS09645	0.78	+2.2
2,175,490	-		DDA3937_RS09645	0.78	-0.2
2,175,580	-				+1.7
2,175,587	+		DDA3937_RS09645	0.88	+0.3
2,175,587	+		DDA3937_RS09645	0.88	-0.9
2,175,588	-		DDA3937_RS09645	0.88	+0.7
2,175,588	-		DDA3937_RS09645	0.88	-1.4
2,175,588	-		DDA3937_RS09645	0.88	-0.4
2,175,588	-		DDA3937_RS09645	0.88	-1.4
2,175,659	+				-0.3
2,175,660	-				+0.9
2,175,660	-				-1.7
2,175,721	-				-0.3
2,175,737	-				+0.1
2,175,737	-				-1.4