Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS06160

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,380,765	-		DDA3937_RS06155	0.34	-0.4
1,380,815	-		DDA3937_RS06155	0.38	-1.7
1,380,815	-		DDA3937_RS06155	0.38	-2.0
1,380,905	-		DDA3937_RS06155	0.45	-0.2
1,380,933	+				+0.4
1,380,933	+		DDA3937_RS06155	0.48	-0.4
1,380,934	-		DDA3937_RS06155	0.48	-2.2
1,380,942	+		DDA3937_RS06155	0.48	-3.2
1,380,943	-		DDA3937_RS06155	0.48	-1.2
1,380,953	+		DDA3937_RS06155	0.49	+0.0
1,381,055	+				-0.6
1,381,069	+		DDA3937_RS06155	0.59	-1.8
1,381,069	+		DDA3937_RS06155	0.59	+1.0
1,381,074	+		DDA3937_RS06155	0.59	-0.0
1,381,115	+		DDA3937_RS06155	0.63	-0.4
1,381,115	+		DDA3937_RS06155	0.63	-0.2
1,381,115	+		DDA3937_RS06155	0.63	-1.3
1,381,115	+		DDA3937_RS06155	0.63	+0.4
1,381,116	-		DDA3937_RS06155	0.63	-1.3
1,381,116	-		DDA3937_RS06155	0.63	-0.4
1,381,116	-		DDA3937_RS06155	0.63	-2.6
1,381,116	-		DDA3937_RS06155	0.63	-1.3
1,381,119	+		DDA3937_RS06155	0.63	-1.2
1,381,119	+		DDA3937_RS06155	0.63	-0.0
1,381,120	-		DDA3937_RS06155	0.63	-2.2
1,381,120	-				+2.3
1,381,120	-		DDA3937_RS06155	0.63	+0.2
1,381,120	-		DDA3937_RS06155	0.63	-2.0
1,381,147	+		DDA3937_RS06155	0.65	-1.5
1,381,163	-		DDA3937_RS06155	0.67	-1.7
1,381,172	-		DDA3937_RS06155	0.67	-0.6
1,381,182	+		DDA3937_RS06155	0.68	+2.3
1,381,306	+		DDA3937_RS06155	0.78	+1.5
1,381,307	-		DDA3937_RS06155	0.78	+0.1
1,381,326	+		DDA3937_RS06155	0.80	-1.3
1,381,326	+		DDA3937_RS06155	0.80	-1.2
1,381,326	+		DDA3937_RS06155	0.80	-0.3
1,381,326	+		DDA3937_RS06155	0.80	-1.0
1,381,327	-		DDA3937_RS06155	0.80	-1.5
1,381,327	-		DDA3937_RS06155	0.80	+1.6
1,381,327	-		DDA3937_RS06155	0.80	+0.4
1,381,391	+		DDA3937_RS06155	0.85	-0.0
1,381,392	-		DDA3937_RS06155	0.85	-1.0
1,381,396	+		DDA3937_RS06155	0.86	+2.1
1,381,407	+		DDA3937_RS06155	0.87	-0.0
1,381,407	+		DDA3937_RS06155	0.87	-0.3
1,381,408	-		DDA3937_RS06155	0.87	-1.4
1,381,408	-		DDA3937_RS06155	0.87	-1.7
1,381,422	+		DDA3937_RS06155	0.88	-1.6
1,381,423	-		DDA3937_RS06155	0.88	-0.8
1,381,423	-		DDA3937_RS06155	0.88	-1.4
1,381,472	-				-1.5
1,381,472	-				-2.0
1,381,485	+				-0.7
1,381,531	+				-1.5
1,381,531	+				+0.4
1,381,531	+				-3.2
1,381,532	-				-1.5
1,381,532	-				-1.3
1,381,540	+				-3.3
1,381,541	-				-2.2
1,381,593	-				+0.5
1,381,593	-				+1.2
1,381,593	-				-2.8
1,381,594	+				-0.6
1,381,594	+				-0.6
1,381,594	+				-1.9
1,381,594	+				-3.1
1,381,594	+				-1.5
1,381,595	-				-0.5
1,381,595	-				-0.5
1,381,595	-				+0.4
1,381,616	+				-1.5
1,381,616	+				-0.2
1,381,616	+				+0.4
1,381,616	+				-1.6
1,381,617	-				-0.3
1,381,617	-				-0.1
1,381,617	-				+1.2
1,381,617	-				+1.0
1,381,617	-				+0.6
1,381,618	+				-2.7
1,381,619	-				+0.5
1,381,619	-				-2.8
1,381,619	-				+1.7
1,381,650	+				-0.7
1,381,650	+				-0.8
1,381,650	+				-0.2
1,381,650	+				+1.6
1,381,650	+				+0.6
1,381,650	+				+0.4
1,381,651	-				+0.1
1,381,699	-				-0.0
1,381,705	-				-1.4
1,381,742	+				-0.8
1,381,743	-				+1.0
1,381,743	-				-0.0
1,381,772	+				-0.1
1,381,863	+		DDA3937_RS06160	0.10	-0.7
1,381,864	-		DDA3937_RS06160	0.10	-0.2
1,381,871	+		DDA3937_RS06160	0.11	+1.6
1,381,893	+		DDA3937_RS06160	0.13	-0.8
1,381,894	-		DDA3937_RS06160	0.13	+0.5
1,382,432	+		DDA3937_RS06160	0.59	-1.8
1,382,432	+		DDA3937_RS06160	0.59	+1.3
1,382,432	+		DDA3937_RS06160	0.59	-1.0
1,382,432	+		DDA3937_RS06160	0.59	+1.5
1,382,432	+		DDA3937_RS06160	0.59	+0.7
1,382,432	+		DDA3937_RS06160	0.59	-1.6
1,382,433	-		DDA3937_RS06160	0.59	-1.0
1,382,433	-		DDA3937_RS06160	0.59	-0.0
1,382,433	-		DDA3937_RS06160	0.59	-2.2
1,382,495	+		DDA3937_RS06160	0.64	-0.6
1,382,495	+		DDA3937_RS06160	0.64	-2.0
1,382,495	+		DDA3937_RS06160	0.64	+1.0
1,382,495	+		DDA3937_RS06160	0.64	-0.8
1,382,495	+		DDA3937_RS06160	0.64	-0.4
1,382,495	+		DDA3937_RS06160	0.64	+0.2
1,382,495	+		DDA3937_RS06160	0.64	-0.3
1,382,495	+		DDA3937_RS06160	0.64	-0.4
1,382,496	-		DDA3937_RS06160	0.64	-0.6
1,382,496	-		DDA3937_RS06160	0.64	+0.6
1,382,496	-		DDA3937_RS06160	0.64	-0.5
1,382,497	+		DDA3937_RS06160	0.65	-1.8
1,382,497	+		DDA3937_RS06160	0.65	-2.3
1,382,497	+		DDA3937_RS06160	0.65	+0.7
1,382,497	+		DDA3937_RS06160	0.65	-1.0
1,382,498	-		DDA3937_RS06160	0.65	-0.2
1,382,563	+		DDA3937_RS06160	0.70	-1.3
1,382,563	+		DDA3937_RS06160	0.70	+1.0
1,382,563	+		DDA3937_RS06160	0.70	+0.6
1,382,563	+		DDA3937_RS06160	0.70	-2.5
1,382,564	-		DDA3937_RS06160	0.70	+0.2
1,382,564	-		DDA3937_RS06160	0.70	-0.3
1,382,564	-		DDA3937_RS06160	0.70	-1.3
1,382,564	-		DDA3937_RS06160	0.70	-0.4
1,382,564	-		DDA3937_RS06160	0.70	+1.1
1,382,708	+		DDA3937_RS06160	0.83	-1.3
1,382,713	+		DDA3937_RS06160	0.83	-0.7
1,382,734	+		DDA3937_RS06160	0.85	-2.0
1,382,735	-		DDA3937_RS06160	0.85	+0.2
1,382,758	+		DDA3937_RS06160	0.87	-1.6
1,382,758	+		DDA3937_RS06160	0.87	+0.8
1,382,758	+		DDA3937_RS06160	0.87	-1.3
1,382,759	-		DDA3937_RS06160	0.87	-1.6
1,382,759	-		DDA3937_RS06160	0.87	-0.0
1,382,768	-		DDA3937_RS06160	0.88	+0.1
1,382,809	+				-1.6
1,382,809	+				-0.6
1,382,809	+				-1.6
1,382,809	+				+0.3
1,382,809	+				+0.7
1,382,809	+				+2.1
1,382,809	+				+1.0
1,382,809	+				+0.3
1,382,809	+				+0.5
1,382,810	-				-0.2
1,382,810	-				-0.9
1,382,810	-				-2.0
1,382,810	-				+0.1
1,382,914	+				-1.3
1,382,920	+				-1.0