Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS05180 and DDA3937_RS05185 overlap by 4 nucleotides DDA3937_RS05185 and DDA3937_RS05190 are separated by 75 nucleotides DDA3937_RS05190 and DDA3937_RS05195 are separated by 12 nucleotides
DDA3937_RS05180: DDA3937_RS05180 - lipid-A-disaccharide synthase, at 1,155,414 to 1,156,562
_RS05180
DDA3937_RS05185: DDA3937_RS05185 - ribonuclease HII, at 1,156,559 to 1,157,155
_RS05185
DDA3937_RS05190: DDA3937_RS05190 - DNA polymerase III subunit alpha, at 1,157,231 to 1,160,713
_RS05190
DDA3937_RS05195: DDA3937_RS05195 - acetyl-CoA carboxylase carboxyl transferase subunit alpha, at 1,160,726 to 1,161,685
_RS05195
Position (kb) 1157
1158
1159
1160
1161 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1156.594 kb on + strand at 1156.594 kb on + strand at 1156.632 kb on + strand, within DDA3937_RS05185 at 1156.733 kb on + strand, within DDA3937_RS05185 at 1156.733 kb on + strand, within DDA3937_RS05185 at 1156.804 kb on + strand, within DDA3937_RS05185 at 1156.861 kb on + strand, within DDA3937_RS05185 at 1156.861 kb on + strand, within DDA3937_RS05185 at 1156.862 kb on - strand, within DDA3937_RS05185 at 1157.060 kb on - strand, within DDA3937_RS05185 at 1157.066 kb on + strand, within DDA3937_RS05185 at 1157.175 kb on + strand at 1157.175 kb on + strand at 1157.175 kb on + strand at 1160.711 kb on + strand at 1161.677 kb on + strand at 1161.689 kb on - strand at 1161.697 kb on - strand at 1161.699 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 1,156,594 + -1.4 1,156,594 + +2.1 1,156,632 + DDA3937_RS05185 0.12 +0.4 1,156,733 + DDA3937_RS05185 0.29 +1.2 1,156,733 + DDA3937_RS05185 0.29 -0.7 1,156,804 + DDA3937_RS05185 0.41 -0.8 1,156,861 + DDA3937_RS05185 0.51 +0.1 1,156,861 + DDA3937_RS05185 0.51 +0.0 1,156,862 - DDA3937_RS05185 0.51 +1.9 1,157,060 - DDA3937_RS05185 0.84 +0.6 1,157,066 + DDA3937_RS05185 0.85 +0.9 1,157,175 + -0.9 1,157,175 + -0.6 1,157,175 + -2.7 1,160,711 + +1.5 1,161,677 + -1.3 1,161,689 - -0.8 1,161,697 - +0.4 1,161,699 - -1.6
Or see this region's nucleotide sequence