Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS04735

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,044,561	+		DDA3937_RS04730	0.73	-0.3
1,044,908	+		DDA3937_RS04730	0.84	+2.3
1,044,908	+		DDA3937_RS04730	0.84	-1.5
1,044,909	-		DDA3937_RS04730	0.84	-1.1
1,044,909	-		DDA3937_RS04730	0.84	+1.3
1,045,024	-		DDA3937_RS04730	0.88	+1.1
1,045,134	+				-0.2
1,045,135	-				-1.5
1,045,256	-				+0.7
1,045,264	-				+0.8
1,045,284	-				+0.8
1,045,455	+				-1.3
1,045,455	+				-1.1
1,045,456	-				+0.1
1,045,468	+				-0.1
1,045,468	+				+0.3
1,045,468	+				-1.0
1,045,494	+				-0.1
1,045,495	-				-0.5
1,045,647	+		DDA3937_RS04735	0.15	+0.7
1,045,796	+		DDA3937_RS04735	0.27	-1.6
1,045,796	+		DDA3937_RS04735	0.27	-2.1
1,045,875	-		DDA3937_RS04735	0.33	-1.1
1,045,875	-		DDA3937_RS04735	0.33	+0.7
1,045,883	-		DDA3937_RS04735	0.34	-0.9
1,045,956	+		DDA3937_RS04735	0.40	-0.4
1,045,956	+		DDA3937_RS04735	0.40	+1.6
1,045,956	+		DDA3937_RS04735	0.40	-0.3
1,045,956	+		DDA3937_RS04735	0.40	-0.1
1,045,956	+		DDA3937_RS04735	0.40	-0.5
1,045,957	-		DDA3937_RS04735	0.40	+0.9
1,045,957	-		DDA3937_RS04735	0.40	-1.9
1,045,957	-		DDA3937_RS04735	0.40	-1.4
1,045,957	-		DDA3937_RS04735	0.40	+0.8
1,045,957	-		DDA3937_RS04735	0.40	-0.2
1,045,960	+		DDA3937_RS04735	0.40	-0.8
1,045,960	+		DDA3937_RS04735	0.40	+0.2
1,045,961	-		DDA3937_RS04735	0.40	-1.6
1,045,961	-		DDA3937_RS04735	0.40	-1.1
1,045,961	-		DDA3937_RS04735	0.40	+0.4
1,045,961	-		DDA3937_RS04735	0.40	-0.2
1,045,961	-		DDA3937_RS04735	0.40	-0.2
1,045,975	+		DDA3937_RS04735	0.41	-1.9
1,045,975	+		DDA3937_RS04735	0.41	-0.3
1,045,976	-		DDA3937_RS04735	0.41	-1.5
1,045,976	-		DDA3937_RS04735	0.41	+0.2
1,045,976	-		DDA3937_RS04735	0.41	+0.4
1,045,976	-		DDA3937_RS04735	0.41	-0.5
1,045,976	-		DDA3937_RS04735	0.41	+2.3
1,045,976	-		DDA3937_RS04735	0.41	-0.9
1,045,977	+				-0.9
1,045,977	+		DDA3937_RS04735	0.41	+1.3
1,045,977	+		DDA3937_RS04735	0.41	+0.6
1,045,977	+		DDA3937_RS04735	0.41	-0.9
1,045,977	+		DDA3937_RS04735	0.41	-0.9
1,045,977	+		DDA3937_RS04735	0.41	+0.7
1,045,977	+		DDA3937_RS04735	0.41	-0.7
1,045,977	+		DDA3937_RS04735	0.41	+2.2
1,045,977	+		DDA3937_RS04735	0.41	+1.1
1,045,977	+		DDA3937_RS04735	0.41	+0.5
1,045,977	+		DDA3937_RS04735	0.41	-0.8
1,045,977	+		DDA3937_RS04735	0.41	-0.5
1,045,977	+		DDA3937_RS04735	0.41	-0.7
1,045,977	+		DDA3937_RS04735	0.41	-0.9
1,045,977	+		DDA3937_RS04735	0.41	-1.5
1,045,977	+				-1.5
1,045,978	-		DDA3937_RS04735	0.42	+1.1
1,045,978	-		DDA3937_RS04735	0.42	+0.0
1,045,978	-		DDA3937_RS04735	0.42	+1.5
1,045,978	-		DDA3937_RS04735	0.42	+0.6
1,045,978	-		DDA3937_RS04735	0.42	-0.3
1,045,978	-		DDA3937_RS04735	0.42	+0.8
1,045,978	-		DDA3937_RS04735	0.42	-0.8
1,045,978	-		DDA3937_RS04735	0.42	+0.6
1,045,978	-		DDA3937_RS04735	0.42	-0.2
1,045,978	-		DDA3937_RS04735	0.42	+0.1
1,045,981	+		DDA3937_RS04735	0.42	+0.9
1,045,981	+		DDA3937_RS04735	0.42	+1.5
1,045,981	+		DDA3937_RS04735	0.42	+0.6
1,045,981	+		DDA3937_RS04735	0.42	+3.1
1,045,981	+		DDA3937_RS04735	0.42	-1.3
1,045,982	-				-0.5
1,045,982	-		DDA3937_RS04735	0.42	-1.3
1,045,982	-		DDA3937_RS04735	0.42	+2.9
1,045,982	-		DDA3937_RS04735	0.42	+0.2
1,045,982	-		DDA3937_RS04735	0.42	+0.7
1,045,982	-		DDA3937_RS04735	0.42	+0.6
1,045,982	-		DDA3937_RS04735	0.42	-0.2
1,045,983	+		DDA3937_RS04735	0.42	+0.0
1,045,983	+		DDA3937_RS04735	0.42	-1.6
1,045,983	+		DDA3937_RS04735	0.42	-1.5
1,045,983	+		DDA3937_RS04735	0.42	+1.5
1,045,983	+		DDA3937_RS04735	0.42	+0.9
1,045,983	+		DDA3937_RS04735	0.42	-0.1
1,045,983	+		DDA3937_RS04735	0.42	-2.6
1,045,983	+		DDA3937_RS04735	0.42	-0.1
1,045,983	+		DDA3937_RS04735	0.42	-0.2
1,045,983	+		DDA3937_RS04735	0.42	+1.1
1,045,983	+		DDA3937_RS04735	0.42	+0.1
1,045,983	+		DDA3937_RS04735	0.42	-1.8
1,045,983	+		DDA3937_RS04735	0.42	-2.5
1,045,984	-		DDA3937_RS04735	0.42	-0.9
1,045,984	-		DDA3937_RS04735	0.42	+4.2
1,045,984	-		DDA3937_RS04735	0.42	+1.1
1,045,984	-		DDA3937_RS04735	0.42	-1.9
1,045,984	-		DDA3937_RS04735	0.42	-0.6
1,045,984	-		DDA3937_RS04735	0.42	+0.5
1,045,984	-		DDA3937_RS04735	0.42	-0.5
1,045,984	-		DDA3937_RS04735	0.42	+2.1
1,045,984	-		DDA3937_RS04735	0.42	+0.9
1,045,984	-		DDA3937_RS04735	0.42	-2.3
1,045,984	-		DDA3937_RS04735	0.42	-1.8
1,045,984	-				-0.5
1,045,984	-		DDA3937_RS04735	0.42	-0.9
1,045,984	-		DDA3937_RS04735	0.42	-0.6
1,045,984	-		DDA3937_RS04735	0.42	-0.0
1,045,984	-		DDA3937_RS04735	0.42	+1.1
1,045,984	-		DDA3937_RS04735	0.42	-1.3
1,046,071	-		DDA3937_RS04735	0.49	+0.5
1,046,169	+		DDA3937_RS04735	0.57	-0.6
1,046,169	+		DDA3937_RS04735	0.57	-0.4
1,046,170	-		DDA3937_RS04735	0.57	-1.5
1,046,314	+		DDA3937_RS04735	0.68	+0.5
1,046,425	+		DDA3937_RS04735	0.77	-1.0
1,046,455	+		DDA3937_RS04735	0.80	+2.9
1,046,455	+		DDA3937_RS04735	0.80	-0.1
1,046,456	-		DDA3937_RS04735	0.80	+0.1
1,046,456	-		DDA3937_RS04735	0.80	-0.4
1,046,507	+		DDA3937_RS04735	0.84	-1.3
1,046,508	-		DDA3937_RS04735	0.84	-0.5
1,046,508	-		DDA3937_RS04735	0.84	-0.2
1,046,574	+		DDA3937_RS04735	0.89	-2.8
1,046,574	+		DDA3937_RS04735	0.89	-2.3
1,046,575	-		DDA3937_RS04735	0.89	+0.6
1,046,575	-		DDA3937_RS04735	0.89	-2.3
1,046,707	+				-1.0
1,046,708	-				-0.6
1,046,708	-				-0.9
1,046,733	+				-1.2
1,046,734	-				+0.1
1,046,779	+				+0.7
1,046,783	+				-0.7
1,046,783	+				+0.6
1,046,784	-				+0.0
1,046,784	-				+0.4
1,046,784	-				+0.0
1,046,785	+				+1.2
1,046,786	-				-0.5
1,046,869	+				+0.1
1,046,909	-				-2.1
1,046,916	+				-0.4
1,046,929	+				-0.6
1,046,985	+				+0.6
1,047,094	+				-1.2
1,047,101	-				-0.8
1,047,198	+		DDA3937_RS23410	0.53	-0.4
1,047,211	-		DDA3937_RS23410	0.61	-0.5
1,047,292	+				-0.5
1,047,292	+				-1.2
1,047,293	-				+1.3
1,047,297	-				-0.1
1,047,322	+				-0.8
1,047,322	+				-0.1
1,047,322	+				+2.7
1,047,322	+				-0.8
1,047,323	-				+1.1
1,047,358	-				+0.6
1,047,362	+				-0.4
1,047,362	+				+0.2
1,047,362	+				-0.6
1,047,363	-				-0.3
1,047,363	-				+1.6
1,047,363	-				-0.9
1,047,363	-				-0.1
1,047,363	-				+0.1
1,047,363	-				+0.9
1,047,431	-		DDA3937_RS04740	0.17	-3.0
1,047,431	-		DDA3937_RS04740	0.17	+0.1
1,047,536	+		DDA3937_RS04740	0.44	-1.2
1,047,536	+		DDA3937_RS04740	0.44	-1.4
1,047,536	+		DDA3937_RS04740	0.44	-1.8
1,047,537	-		DDA3937_RS04740	0.44	-0.4
1,047,537	-		DDA3937_RS04740	0.44	-2.6
1,047,537	-		DDA3937_RS04740	0.44	-1.8
1,047,537	-		DDA3937_RS04740	0.44	+1.9
1,047,537	-		DDA3937_RS04740	0.44	+0.4
1,047,537	-		DDA3937_RS04740	0.44	-2.3
1,047,594	+		DDA3937_RS04740	0.58	-0.4
1,047,595	-		DDA3937_RS04740	0.59	+0.5
1,047,595	-		DDA3937_RS04740	0.59	+0.8
1,047,595	-		DDA3937_RS04740	0.59	-0.0
1,047,621	+		DDA3937_RS04740	0.65	+0.5
1,047,621	+		DDA3937_RS04740	0.65	-0.5
1,047,622	-		DDA3937_RS04740	0.65	-0.8