Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS04685

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,032,063	+				-2.8
1,032,075	+				+0.4
1,032,075	+				+0.6
1,032,075	+				-0.5
1,032,076	-				-1.4
1,032,076	-				+1.1
1,032,083	+				-0.0
1,032,083	+				-0.4
1,032,083	+				-1.1
1,032,084	-				-2.0
1,032,181	+				-0.9
1,032,182	-				+0.5
1,032,182	-				-1.5
1,032,231	-				-0.9
1,032,231	-				-0.8
1,032,320	+				-0.5
1,032,320	+				-0.1
1,032,320	+				-0.8
1,032,321	-				-0.6
1,032,321	-				-0.4
1,032,341	+				+1.9
1,032,349	-				-1.9
1,032,349	-				-0.4
1,032,376	+				+1.1
1,032,377	-				+1.1
1,032,383	+				-1.8
1,032,383	+				-1.9
1,032,383	+				+1.6
1,032,383	+				+0.5
1,032,383	+				+0.2
1,032,383	+				+0.5
1,032,384	-				-2.3
1,032,384	-				-1.1
1,032,384	-				-0.9
1,032,413	+				-1.3
1,032,436	-		DDA3937_RS04680	0.15	+0.2
1,032,747	+		DDA3937_RS04680	0.73	+0.1
1,032,770	+		DDA3937_RS04680	0.78	+0.9
1,032,770	+		DDA3937_RS04680	0.78	-1.4
1,032,770	+		DDA3937_RS04680	0.78	-0.1
1,032,771	-		DDA3937_RS04680	0.78	+0.1
1,032,881	-				+0.5
1,032,881	-				+1.3
1,032,887	+				+0.9
1,032,887	+				-0.3
1,032,887	+				+2.4
1,032,887	+				-1.2
1,032,888	-				-0.8
1,032,888	-				-0.3
1,032,888	-				+0.1
1,033,015	+				-0.2
1,033,015	+				+1.4
1,033,015	+				-0.9
1,033,015	+				-1.4
1,033,015	+				-0.3
1,033,016	-				-2.0
1,033,016	-				-0.1
1,033,038	+				+0.1
1,033,038	+				-0.5
1,033,118	+				-0.2
1,033,119	-				-1.6
1,033,119	-				+1.6
1,033,120	+				+0.4
1,033,178	-		DDA3937_RS04685	0.14	-0.3
1,033,212	+		DDA3937_RS04685	0.18	+0.1
1,033,417	+		DDA3937_RS04685	0.40	-1.6
1,033,544	+		DDA3937_RS04685	0.55	-0.2
1,033,544	+		DDA3937_RS04685	0.55	+0.1
1,033,544	+		DDA3937_RS04685	0.55	+0.1
1,033,544	+		DDA3937_RS04685	0.55	-0.7
1,033,545	-		DDA3937_RS04685	0.55	-0.5
1,033,545	-		DDA3937_RS04685	0.55	-0.2
1,033,545	-		DDA3937_RS04685	0.55	+0.1
1,033,545	-		DDA3937_RS04685	0.55	-0.3
1,033,545	-		DDA3937_RS04685	0.55	-1.5
1,033,721	+		DDA3937_RS04685	0.74	-0.8
1,033,721	+		DDA3937_RS04685	0.74	-2.1
1,033,721	+		DDA3937_RS04685	0.74	+0.3
1,033,721	+		DDA3937_RS04685	0.74	+0.4
1,033,722	-		DDA3937_RS04685	0.75	+0.4
1,033,722	-		DDA3937_RS04685	0.75	-1.1
1,033,730	+		DDA3937_RS04685	0.76	+0.5
1,033,731	-		DDA3937_RS04685	0.76	-0.7
1,033,731	-		DDA3937_RS04685	0.76	-1.4
1,033,731	-		DDA3937_RS04685	0.76	-0.4
1,033,850	+		DDA3937_RS04685	0.89	-0.8
1,033,850	+		DDA3937_RS04685	0.89	-1.9
1,033,853	+		DDA3937_RS04685	0.89	+1.1
1,033,854	-		DDA3937_RS04685	0.89	-0.1
1,033,977	-				-2.3
1,034,007	+				-0.8
1,034,007	+				-0.7
1,034,008	-				+0.1
1,034,008	-				-0.8
1,034,008	-				-0.7
1,034,026	+				-0.2
1,034,026	+				-0.7
1,034,027	-				+0.9
1,034,049	+				+0.1
1,034,049	+				+3.1
1,034,050	-				-0.3
1,034,060	+				-0.2
1,034,061	-				-0.5
1,034,071	+				-0.5
1,034,071	+				-0.5
1,034,071	+				-1.8
1,034,071	+				-0.8
1,034,071	+				+0.7
1,034,072	-				-0.5
1,034,072	-				-0.4
1,034,072	-				+0.2
1,034,072	-				+0.2
1,034,128	-		DDA3937_RS04690	0.14	-0.1
1,034,128	-		DDA3937_RS04690	0.14	-2.9
1,034,159	+		DDA3937_RS04690	0.20	+0.6
1,034,159	+		DDA3937_RS04690	0.20	-1.8
1,034,159	+		DDA3937_RS04690	0.20	-0.8
1,034,160	-		DDA3937_RS04690	0.20	-0.5
1,034,334	+		DDA3937_RS04690	0.58	+0.4
1,034,350	+		DDA3937_RS04690	0.61	+0.2
1,034,350	+		DDA3937_RS04690	0.61	+0.1
1,034,368	+		DDA3937_RS04690	0.65	-1.3
1,034,368	+		DDA3937_RS04690	0.65	-3.2
1,034,368	+		DDA3937_RS04690	0.65	-0.1
1,034,368	+		DDA3937_RS04690	0.65	+1.4
1,034,368	+		DDA3937_RS04690	0.65	-0.5
1,034,368	+		DDA3937_RS04690	0.65	-0.4
1,034,368	+		DDA3937_RS04690	0.65	-0.3
1,034,369	-		DDA3937_RS04690	0.65	-0.4
1,034,369	-		DDA3937_RS04690	0.65	-0.6
1,034,369	-		DDA3937_RS04690	0.65	+0.5
1,034,369	-		DDA3937_RS04690	0.65	-0.8
1,034,369	-		DDA3937_RS04690	0.65	+0.4
1,034,369	-		DDA3937_RS04690	0.65	-0.3
1,034,369	-		DDA3937_RS04690	0.65	+2.4
1,034,369	-		DDA3937_RS04690	0.65	+0.2
1,034,369	-		DDA3937_RS04690	0.65	+2.9
1,034,379	+		DDA3937_RS04690	0.68	+0.8
1,034,380	-				+1.8
1,034,406	+		DDA3937_RS04690	0.73	+2.1
1,034,406	+		DDA3937_RS04690	0.73	-0.6
1,034,479	+		DDA3937_RS04690	0.89	-0.4
1,034,479	+		DDA3937_RS04690	0.89	-0.4
1,034,480	-		DDA3937_RS04690	0.89	-1.9
1,034,480	-		DDA3937_RS04690	0.89	-1.3
1,034,489	-				-1.9
1,034,510	+				+0.8
1,034,511	-				-3.3
1,034,511	-				-1.3
1,034,622	+		DDA3937_RS04695	0.13	+0.4
1,034,623	-		DDA3937_RS04695	0.13	+0.1
1,034,641	+		DDA3937_RS04695	0.16	-0.1
1,034,641	+		DDA3937_RS04695	0.16	-1.0
1,034,641	+		DDA3937_RS04695	0.16	-0.5
1,034,641	+		DDA3937_RS04695	0.16	-2.1
1,034,641	+				+0.6
1,034,641	+		DDA3937_RS04695	0.16	+0.9
1,034,642	-		DDA3937_RS04695	0.16	-2.0
1,034,642	-		DDA3937_RS04695	0.16	+1.9
1,034,642	-		DDA3937_RS04695	0.16	-2.1
1,034,642	-		DDA3937_RS04695	0.16	-1.0
1,034,642	-		DDA3937_RS04695	0.16	-0.9
1,034,642	-		DDA3937_RS04695	0.16	-0.3
1,034,741	-		DDA3937_RS04695	0.29	+0.2
1,034,741	-				+1.1
1,034,741	-		DDA3937_RS04695	0.29	+1.0
1,034,741	-		DDA3937_RS04695	0.29	-0.6