Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS04420 and DDA3937_RS04425 are separated by 83 nucleotides DDA3937_RS04425 and DDA3937_RS04430 are separated by 688 nucleotides
DDA3937_RS04420: DDA3937_RS04420 - Dyp-type peroxidase, at 975,939 to 976,838
_RS04420
DDA3937_RS04425: DDA3937_RS04425 - cysteine synthase CysM, at 976,922 to 977,803
_RS04425
DDA3937_RS04430: DDA3937_RS04430 - Hcp family type VI secretion system effector, at 978,492 to 978,971
_RS04430
Position (kb) 976
977
978 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 975.959 kb on + strand at 976.001 kb on + strand at 976.002 kb on - strand at 976.002 kb on - strand at 976.006 kb on + strand at 976.007 kb on - strand at 976.040 kb on + strand, within DDA3937_RS04420 at 976.040 kb on + strand, within DDA3937_RS04420 at 976.040 kb on + strand, within DDA3937_RS04420 at 976.040 kb on + strand, within DDA3937_RS04420 at 976.040 kb on + strand, within DDA3937_RS04420 at 976.041 kb on - strand, within DDA3937_RS04420 at 976.041 kb on - strand, within DDA3937_RS04420 at 976.446 kb on + strand, within DDA3937_RS04420 at 976.446 kb on + strand, within DDA3937_RS04420 at 976.446 kb on + strand, within DDA3937_RS04420 at 976.446 kb on + strand, within DDA3937_RS04420 at 976.446 kb on + strand, within DDA3937_RS04420 at 976.446 kb on + strand, within DDA3937_RS04420 at 976.446 kb on + strand, within DDA3937_RS04420 at 976.678 kb on - strand, within DDA3937_RS04420 at 976.690 kb on - strand, within DDA3937_RS04420 at 976.690 kb on - strand, within DDA3937_RS04420 at 976.705 kb on - strand, within DDA3937_RS04420 at 976.763 kb on + strand at 976.764 kb on - strand at 976.797 kb on + strand at 976.797 kb on + strand at 976.797 kb on + strand at 976.798 kb on - strand at 976.825 kb on + strand at 976.825 kb on + strand at 976.826 kb on - strand at 976.826 kb on - strand at 976.834 kb on + strand at 976.856 kb on - strand at 976.938 kb on + strand at 976.952 kb on - strand at 976.968 kb on + strand at 976.969 kb on - strand at 977.096 kb on - strand, within DDA3937_RS04425 at 977.268 kb on - strand, within DDA3937_RS04425 at 977.503 kb on + strand, within DDA3937_RS04425 at 977.503 kb on + strand, within DDA3937_RS04425 at 977.567 kb on + strand, within DDA3937_RS04425 at 977.567 kb on + strand, within DDA3937_RS04425 at 977.567 kb on + strand, within DDA3937_RS04425 at 977.567 kb on + strand, within DDA3937_RS04425 at 977.567 kb on + strand, within DDA3937_RS04425 at 977.567 kb on + strand, within DDA3937_RS04425 at 977.567 kb on + strand, within DDA3937_RS04425 at 977.567 kb on + strand, within DDA3937_RS04425 at 977.568 kb on - strand, within DDA3937_RS04425 at 977.568 kb on - strand, within DDA3937_RS04425 at 977.568 kb on - strand, within DDA3937_RS04425 at 977.568 kb on - strand, within DDA3937_RS04425 at 977.568 kb on - strand, within DDA3937_RS04425 at 977.568 kb on - strand, within DDA3937_RS04425 at 977.569 kb on + strand, within DDA3937_RS04425 at 977.569 kb on + strand, within DDA3937_RS04425 at 977.569 kb on + strand, within DDA3937_RS04425 at 977.570 kb on - strand, within DDA3937_RS04425 at 977.570 kb on - strand, within DDA3937_RS04425 at 977.570 kb on - strand, within DDA3937_RS04425 at 977.608 kb on + strand, within DDA3937_RS04425 at 977.608 kb on + strand, within DDA3937_RS04425 at 977.608 kb on + strand, within DDA3937_RS04425 at 977.608 kb on + strand, within DDA3937_RS04425 at 977.608 kb on + strand, within DDA3937_RS04425 at 977.614 kb on + strand, within DDA3937_RS04425 at 977.614 kb on + strand, within DDA3937_RS04425 at 977.615 kb on - strand, within DDA3937_RS04425 at 977.615 kb on - strand, within DDA3937_RS04425 at 977.777 kb on + strand at 977.777 kb on + strand at 977.853 kb on + strand at 977.853 kb on + strand at 977.866 kb on + strand at 977.867 kb on - strand at 978.001 kb on + strand at 978.001 kb on + strand at 978.001 kb on + strand at 978.002 kb on - strand at 978.002 kb on - strand at 978.002 kb on - strand at 978.002 kb on - strand at 978.005 kb on + strand at 978.006 kb on - strand at 978.018 kb on + strand at 978.018 kb on + strand at 978.019 kb on - strand at 978.050 kb on + strand at 978.050 kb on + strand at 978.050 kb on + strand at 978.050 kb on + strand at 978.050 kb on + strand at 978.051 kb on - strand at 978.051 kb on - strand at 978.051 kb on - strand at 978.051 kb on - strand at 978.051 kb on - strand at 978.051 kb on - strand at 978.051 kb on - strand at 978.086 kb on + strand at 978.086 kb on + strand at 978.086 kb on + strand at 978.087 kb on - strand at 978.087 kb on - strand at 978.088 kb on + strand at 978.088 kb on + strand at 978.089 kb on - strand at 978.089 kb on - strand at 978.089 kb on - strand at 978.089 kb on - strand at 978.092 kb on - strand at 978.092 kb on - strand at 978.092 kb on - strand at 978.210 kb on + strand at 978.397 kb on - strand at 978.400 kb on + strand at 978.400 kb on + strand at 978.401 kb on - strand at 978.401 kb on - strand at 978.437 kb on - strand at 978.518 kb on + strand at 978.518 kb on + strand at 978.519 kb on - strand at 978.539 kb on + strand at 978.644 kb on - strand, within DDA3937_RS04430 at 978.648 kb on - strand, within DDA3937_RS04430 at 978.659 kb on - strand, within DDA3937_RS04430 at 978.659 kb on - strand, within DDA3937_RS04430 at 978.789 kb on + strand, within DDA3937_RS04430
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 975,959 + -0.9 976,001 + -0.9 976,002 - -0.2 976,002 - -0.6 976,006 + -0.3 976,007 - -2.1 976,040 + DDA3937_RS04420 0.11 -1.1 976,040 + DDA3937_RS04420 0.11 -1.0 976,040 + DDA3937_RS04420 0.11 +2.0 976,040 + DDA3937_RS04420 0.11 +0.1 976,040 + DDA3937_RS04420 0.11 -2.9 976,041 - DDA3937_RS04420 0.11 -1.0 976,041 - DDA3937_RS04420 0.11 -1.0 976,446 + DDA3937_RS04420 0.56 -1.0 976,446 + DDA3937_RS04420 0.56 +1.5 976,446 + DDA3937_RS04420 0.56 -0.8 976,446 + DDA3937_RS04420 0.56 -0.1 976,446 + DDA3937_RS04420 0.56 +0.9 976,446 + DDA3937_RS04420 0.56 -3.2 976,446 + DDA3937_RS04420 0.56 -0.3 976,678 - DDA3937_RS04420 0.82 -1.1 976,690 - DDA3937_RS04420 0.83 -1.2 976,690 - DDA3937_RS04420 0.83 -1.3 976,705 - DDA3937_RS04420 0.85 +1.1 976,763 + -0.2 976,764 - +1.8 976,797 + -0.4 976,797 + -1.0 976,797 + +2.7 976,798 - +0.5 976,825 + -0.4 976,825 + -0.5 976,826 - -0.2 976,826 - +0.5 976,834 + +0.2 976,856 - -0.3 976,938 + -2.1 976,952 - -0.3 976,968 + +0.3 976,969 - +0.3 977,096 - DDA3937_RS04425 0.20 +0.8 977,268 - DDA3937_RS04425 0.39 +1.1 977,503 + DDA3937_RS04425 0.66 -1.9 977,503 + DDA3937_RS04425 0.66 -1.2 977,567 + DDA3937_RS04425 0.73 -3.2 977,567 + DDA3937_RS04425 0.73 +0.1 977,567 + DDA3937_RS04425 0.73 -0.9 977,567 + DDA3937_RS04425 0.73 +0.8 977,567 + DDA3937_RS04425 0.73 -0.1 977,567 + DDA3937_RS04425 0.73 -2.1 977,567 + DDA3937_RS04425 0.73 -1.1 977,567 + DDA3937_RS04425 0.73 -1.7 977,568 - DDA3937_RS04425 0.73 -0.5 977,568 - DDA3937_RS04425 0.73 -1.1 977,568 - DDA3937_RS04425 0.73 -2.2 977,568 - DDA3937_RS04425 0.73 -0.3 977,568 - DDA3937_RS04425 0.73 +0.7 977,568 - DDA3937_RS04425 0.73 -0.2 977,569 + DDA3937_RS04425 0.73 -1.2 977,569 + DDA3937_RS04425 0.73 +0.1 977,569 + DDA3937_RS04425 0.73 -2.4 977,570 - DDA3937_RS04425 0.73 -0.2 977,570 - DDA3937_RS04425 0.73 -0.6 977,570 - DDA3937_RS04425 0.73 -0.1 977,608 + DDA3937_RS04425 0.78 +2.9 977,608 + DDA3937_RS04425 0.78 +1.5 977,608 + DDA3937_RS04425 0.78 +0.3 977,608 + DDA3937_RS04425 0.78 -1.5 977,608 + DDA3937_RS04425 0.78 -0.9 977,614 + DDA3937_RS04425 0.78 -0.6 977,614 + DDA3937_RS04425 0.78 +0.3 977,615 - DDA3937_RS04425 0.79 -0.5 977,615 - DDA3937_RS04425 0.79 -1.5 977,777 + -0.1 977,777 + -0.5 977,853 + -0.3 977,853 + +1.2 977,866 + +2.7 977,867 - +0.3 978,001 + +0.5 978,001 + +1.1 978,001 + -0.8 978,002 - +0.1 978,002 - -0.7 978,002 - -2.1 978,002 - -0.3 978,005 + -1.9 978,006 - +0.4 978,018 + +1.1 978,018 + -1.9 978,019 - +0.0 978,050 + +2.5 978,050 + +1.2 978,050 + -0.5 978,050 + -0.7 978,050 + -1.0 978,051 - +0.4 978,051 - -1.9 978,051 - +1.1 978,051 - +0.1 978,051 - +0.3 978,051 - +0.1 978,051 - -0.7 978,086 + -2.5 978,086 + -0.6 978,086 + +1.2 978,087 - -1.8 978,087 - -3.0 978,088 + +0.5 978,088 + -1.0 978,089 - -1.6 978,089 - -0.4 978,089 - -0.7 978,089 - -0.2 978,092 - +0.3 978,092 - +0.4 978,092 - -0.3 978,210 + -0.2 978,397 - -0.5 978,400 + +2.5 978,400 + -1.1 978,401 - -0.2 978,401 - -0.0 978,437 - +0.1 978,518 + -0.5 978,518 + -2.6 978,519 - -1.2 978,539 + +0.2 978,644 - DDA3937_RS04430 0.32 -2.6 978,648 - DDA3937_RS04430 0.33 -0.2 978,659 - DDA3937_RS04430 0.35 -2.4 978,659 - DDA3937_RS04430 0.35 -0.6 978,789 + DDA3937_RS04430 0.62 -0.2
Or see this region's nucleotide sequence