Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02790 and DDA3937_RS02795 overlap by 4 nucleotides DDA3937_RS02795 and DDA3937_RS02800 are separated by 3 nucleotides DDA3937_RS02800 and DDA3937_RS02805 are separated by 198 nucleotides DDA3937_RS02805 and DDA3937_RS02810 are separated by 3 nucleotides
DDA3937_RS02790: DDA3937_RS02790 - YqjK-like family protein, at 615,924 to 616,229
_RS02790
DDA3937_RS02795: DDA3937_RS02795 - phage holin family protein, at 616,226 to 616,624
_RS02795
DDA3937_RS02800: DDA3937_RS02800 - DUF883 domain-containing protein, at 616,628 to 616,933
_RS02800
DDA3937_RS02805: DDA3937_RS02805 - EnvZ/OmpR regulon moderator MzrA, at 617,132 to 617,482
_RS02805
DDA3937_RS02810: DDA3937_RS02810 - DedA family protein, at 617,486 to 618,160
_RS02810
Position (kb) 616
617 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 615.628 kb on - strand at 615.638 kb on - strand at 615.638 kb on - strand at 615.693 kb on - strand at 615.693 kb on - strand at 615.721 kb on + strand at 615.721 kb on + strand at 615.721 kb on + strand at 615.721 kb on + strand at 615.721 kb on + strand at 615.722 kb on - strand at 615.722 kb on - strand at 615.722 kb on - strand at 615.722 kb on - strand at 615.724 kb on + strand at 615.725 kb on - strand at 615.768 kb on + strand at 615.824 kb on + strand at 615.824 kb on + strand at 615.839 kb on + strand at 615.840 kb on - strand at 615.840 kb on - strand at 615.863 kb on + strand at 615.954 kb on + strand at 615.955 kb on - strand, within DDA3937_RS02790 at 615.966 kb on + strand, within DDA3937_RS02790 at 616.044 kb on + strand, within DDA3937_RS02790 at 616.385 kb on + strand, within DDA3937_RS02795 at 616.385 kb on + strand, within DDA3937_RS02795 at 616.385 kb on + strand, within DDA3937_RS02795 at 616.385 kb on + strand at 616.661 kb on - strand, within DDA3937_RS02800 at 616.702 kb on + strand, within DDA3937_RS02800 at 616.707 kb on - strand, within DDA3937_RS02800 at 616.843 kb on + strand, within DDA3937_RS02800 at 616.844 kb on - strand, within DDA3937_RS02800 at 616.860 kb on - strand, within DDA3937_RS02800 at 616.860 kb on - strand, within DDA3937_RS02800 at 616.947 kb on + strand at 616.984 kb on - strand at 616.987 kb on + strand at 616.987 kb on + strand at 616.987 kb on + strand at 616.987 kb on + strand at 616.987 kb on + strand at 616.987 kb on + strand at 616.987 kb on + strand at 616.987 kb on + strand at 616.987 kb on + strand at 616.987 kb on + strand at 616.987 kb on + strand at 616.988 kb on - strand at 616.988 kb on - strand at 616.988 kb on - strand at 616.988 kb on - strand at 616.988 kb on - strand at 616.988 kb on - strand at 616.988 kb on - strand at 616.988 kb on - strand at 616.988 kb on - strand at 616.988 kb on - strand at 617.024 kb on - strand at 617.087 kb on + strand at 617.088 kb on - strand at 617.088 kb on - strand at 617.165 kb on - strand at 617.165 kb on - strand at 617.187 kb on + strand, within DDA3937_RS02805 at 617.207 kb on + strand, within DDA3937_RS02805 at 617.207 kb on + strand, within DDA3937_RS02805 at 617.207 kb on + strand, within DDA3937_RS02805 at 617.208 kb on - strand, within DDA3937_RS02805 at 617.208 kb on - strand, within DDA3937_RS02805 at 617.275 kb on + strand, within DDA3937_RS02805 at 617.276 kb on - strand, within DDA3937_RS02805 at 617.322 kb on + strand, within DDA3937_RS02805 at 617.322 kb on + strand, within DDA3937_RS02805 at 617.322 kb on + strand, within DDA3937_RS02805 at 617.322 kb on + strand, within DDA3937_RS02805 at 617.323 kb on - strand, within DDA3937_RS02805 at 617.610 kb on + strand, within DDA3937_RS02810 at 617.610 kb on + strand, within DDA3937_RS02810 at 617.622 kb on - strand, within DDA3937_RS02810 at 617.902 kb on - strand, within DDA3937_RS02810
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 615,628 - -0.4 615,638 - -1.4 615,638 - -1.4 615,693 - -0.4 615,693 - -1.5 615,721 + -2.7 615,721 + +2.0 615,721 + -0.4 615,721 + -1.2 615,721 + +1.2 615,722 - +0.6 615,722 - -1.4 615,722 - -1.3 615,722 - +0.9 615,724 + -0.2 615,725 - -0.8 615,768 + +0.4 615,824 + -0.5 615,824 + -2.1 615,839 + +0.0 615,840 - -0.3 615,840 - +0.1 615,863 + +0.3 615,954 + -1.0 615,955 - DDA3937_RS02790 0.10 -0.9 615,966 + DDA3937_RS02790 0.14 -0.8 616,044 + DDA3937_RS02790 0.39 +0.1 616,385 + DDA3937_RS02795 0.40 +1.9 616,385 + DDA3937_RS02795 0.40 -1.1 616,385 + DDA3937_RS02795 0.40 +0.2 616,385 + -0.8 616,661 - DDA3937_RS02800 0.11 -3.3 616,702 + DDA3937_RS02800 0.24 -1.6 616,707 - DDA3937_RS02800 0.26 +0.2 616,843 + DDA3937_RS02800 0.70 -1.1 616,844 - DDA3937_RS02800 0.71 -1.1 616,860 - DDA3937_RS02800 0.76 -0.4 616,860 - DDA3937_RS02800 0.76 -0.6 616,947 + -1.1 616,984 - +0.1 616,987 + +0.6 616,987 + -0.8 616,987 + +2.1 616,987 + +1.7 616,987 + -0.6 616,987 + +0.7 616,987 + +0.4 616,987 + +0.3 616,987 + -1.6 616,987 + -0.3 616,987 + -0.8 616,988 - +0.6 616,988 - -1.1 616,988 - -2.4 616,988 - -0.4 616,988 - +0.8 616,988 - +0.0 616,988 - -0.4 616,988 - +0.9 616,988 - +0.5 616,988 - -0.4 617,024 - -0.6 617,087 + -1.8 617,088 - +0.2 617,088 - -2.1 617,165 - -2.4 617,165 - -2.6 617,187 + DDA3937_RS02805 0.16 -2.2 617,207 + DDA3937_RS02805 0.21 -1.1 617,207 + DDA3937_RS02805 0.21 -1.1 617,207 + DDA3937_RS02805 0.21 -0.4 617,208 - DDA3937_RS02805 0.22 -0.3 617,208 - DDA3937_RS02805 0.22 +1.7 617,275 + DDA3937_RS02805 0.41 -0.5 617,276 - DDA3937_RS02805 0.41 +1.0 617,322 + DDA3937_RS02805 0.54 +0.6 617,322 + DDA3937_RS02805 0.54 +0.1 617,322 + DDA3937_RS02805 0.54 +0.4 617,322 + DDA3937_RS02805 0.54 +1.3 617,323 - DDA3937_RS02805 0.54 -1.1 617,610 + DDA3937_RS02810 0.18 +1.5 617,610 + DDA3937_RS02810 0.18 -1.6 617,622 - DDA3937_RS02810 0.20 -1.0 617,902 - DDA3937_RS02810 0.62 -1.4
Or see this region's nucleotide sequence