Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02705 and DDA3937_RS02710 overlap by 25 nucleotides DDA3937_RS02710 and DDA3937_RS02715 are separated by 114 nucleotides DDA3937_RS02715 and DDA3937_RS02720 are separated by 174 nucleotides
DDA3937_RS02705: DDA3937_RS02705 - protein-disulfide reductase DsbD, at 597,429 to 599,147
_RS02705
DDA3937_RS02710: DDA3937_RS02710 - divalent cation tolerance protein CutA, at 599,123 to 599,524
_RS02710
DDA3937_RS02715: DDA3937_RS02715 - anaerobic C4-dicarboxylate transporter, at 599,639 to 600,940
_RS02715
DDA3937_RS02720: DDA3937_RS02720 - aspartate ammonia-lyase, at 601,115 to 602,554
_RS02720
Position (kb) 599
600
601 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 598.652 kb on + strand, within DDA3937_RS02705 at 598.654 kb on + strand, within DDA3937_RS02705 at 598.654 kb on + strand, within DDA3937_RS02705 at 598.654 kb on + strand, within DDA3937_RS02705 at 598.654 kb on + strand, within DDA3937_RS02705 at 598.654 kb on + strand, within DDA3937_RS02705 at 598.777 kb on + strand, within DDA3937_RS02705 at 598.777 kb on + strand, within DDA3937_RS02705 at 598.777 kb on + strand, within DDA3937_RS02705 at 598.777 kb on + strand, within DDA3937_RS02705 at 598.777 kb on + strand, within DDA3937_RS02705 at 598.778 kb on - strand, within DDA3937_RS02705 at 598.778 kb on - strand, within DDA3937_RS02705 at 598.778 kb on - strand, within DDA3937_RS02705 at 598.778 kb on - strand, within DDA3937_RS02705 at 598.778 kb on - strand, within DDA3937_RS02705 at 598.846 kb on + strand, within DDA3937_RS02705 at 598.847 kb on - strand, within DDA3937_RS02705 at 598.847 kb on - strand, within DDA3937_RS02705 at 598.957 kb on + strand, within DDA3937_RS02705 at 598.957 kb on + strand at 598.957 kb on + strand, within DDA3937_RS02705 at 598.957 kb on + strand, within DDA3937_RS02705 at 598.957 kb on + strand, within DDA3937_RS02705 at 598.957 kb on + strand, within DDA3937_RS02705 at 598.957 kb on + strand, within DDA3937_RS02705 at 598.958 kb on - strand, within DDA3937_RS02705 at 598.958 kb on - strand, within DDA3937_RS02705 at 598.958 kb on - strand, within DDA3937_RS02705 at 598.960 kb on + strand, within DDA3937_RS02705 at 599.129 kb on + strand at 599.129 kb on + strand at 599.130 kb on - strand at 599.130 kb on - strand at 599.154 kb on + strand at 599.155 kb on - strand at 599.155 kb on - strand at 599.263 kb on + strand, within DDA3937_RS02710 at 599.263 kb on + strand, within DDA3937_RS02710 at 599.264 kb on - strand, within DDA3937_RS02710 at 599.299 kb on + strand, within DDA3937_RS02710 at 599.299 kb on + strand, within DDA3937_RS02710 at 599.299 kb on + strand at 599.299 kb on + strand, within DDA3937_RS02710 at 599.300 kb on - strand, within DDA3937_RS02710 at 599.314 kb on - strand, within DDA3937_RS02710 at 599.336 kb on + strand, within DDA3937_RS02710 at 599.337 kb on - strand, within DDA3937_RS02710 at 599.420 kb on + strand, within DDA3937_RS02710 at 599.420 kb on + strand, within DDA3937_RS02710 at 599.420 kb on + strand, within DDA3937_RS02710 at 599.421 kb on - strand, within DDA3937_RS02710 at 599.441 kb on + strand, within DDA3937_RS02710 at 599.441 kb on + strand, within DDA3937_RS02710 at 599.444 kb on + strand, within DDA3937_RS02710 at 599.444 kb on + strand, within DDA3937_RS02710 at 599.452 kb on + strand, within DDA3937_RS02710 at 599.453 kb on - strand, within DDA3937_RS02710 at 599.453 kb on - strand, within DDA3937_RS02710 at 599.459 kb on + strand, within DDA3937_RS02710 at 599.459 kb on + strand, within DDA3937_RS02710 at 599.460 kb on - strand, within DDA3937_RS02710 at 599.488 kb on + strand at 599.488 kb on + strand at 599.557 kb on + strand at 599.557 kb on + strand at 599.557 kb on + strand at 599.557 kb on + strand at 599.557 kb on + strand at 599.557 kb on + strand at 599.557 kb on + strand at 599.557 kb on + strand at 599.557 kb on + strand at 599.557 kb on + strand at 599.557 kb on + strand at 599.557 kb on + strand at 599.557 kb on + strand at 599.557 kb on + strand at 599.557 kb on + strand at 599.557 kb on + strand at 599.557 kb on + strand at 599.557 kb on + strand at 599.558 kb on - strand at 599.558 kb on - strand at 599.558 kb on - strand at 599.558 kb on - strand at 599.558 kb on - strand at 599.558 kb on - strand at 599.558 kb on - strand at 599.558 kb on - strand at 599.558 kb on - strand at 599.558 kb on - strand at 599.559 kb on + strand at 599.559 kb on + strand at 599.559 kb on + strand at 599.560 kb on - strand at 599.560 kb on - strand at 599.560 kb on - strand at 599.581 kb on + strand at 599.641 kb on - strand at 599.709 kb on - strand at 599.709 kb on - strand at 599.730 kb on + strand at 599.730 kb on + strand at 599.730 kb on + strand at 599.730 kb on + strand at 599.731 kb on - strand at 599.731 kb on - strand at 599.731 kb on - strand at 599.731 kb on - strand at 599.731 kb on - strand at 599.731 kb on - strand at 599.790 kb on + strand, within DDA3937_RS02715 at 599.790 kb on + strand, within DDA3937_RS02715 at 599.790 kb on + strand, within DDA3937_RS02715 at 599.791 kb on - strand, within DDA3937_RS02715 at 599.907 kb on + strand, within DDA3937_RS02715 at 599.907 kb on + strand, within DDA3937_RS02715 at 599.907 kb on + strand, within DDA3937_RS02715 at 599.966 kb on + strand, within DDA3937_RS02715 at 599.967 kb on - strand, within DDA3937_RS02715 at 600.016 kb on + strand, within DDA3937_RS02715 at 600.100 kb on + strand, within DDA3937_RS02715 at 600.223 kb on - strand, within DDA3937_RS02715 at 600.342 kb on + strand, within DDA3937_RS02715 at 600.342 kb on + strand, within DDA3937_RS02715 at 600.343 kb on - strand, within DDA3937_RS02715 at 600.415 kb on + strand, within DDA3937_RS02715 at 600.447 kb on + strand, within DDA3937_RS02715 at 600.447 kb on + strand, within DDA3937_RS02715 at 600.651 kb on + strand, within DDA3937_RS02715 at 600.651 kb on + strand, within DDA3937_RS02715 at 600.651 kb on + strand, within DDA3937_RS02715 at 600.651 kb on + strand, within DDA3937_RS02715 at 600.652 kb on - strand, within DDA3937_RS02715 at 600.681 kb on + strand at 600.681 kb on + strand, within DDA3937_RS02715 at 600.682 kb on - strand, within DDA3937_RS02715 at 600.726 kb on + strand, within DDA3937_RS02715 at 600.900 kb on + strand at 600.900 kb on + strand at 600.900 kb on + strand at 600.900 kb on + strand at 600.901 kb on - strand at 600.920 kb on - strand at 600.934 kb on + strand at 601.013 kb on - strand at 601.048 kb on + strand at 601.048 kb on + strand at 601.049 kb on - strand at 601.049 kb on - strand at 601.055 kb on + strand at 601.055 kb on + strand at 601.055 kb on + strand at 601.055 kb on + strand at 601.060 kb on + strand at 601.061 kb on - strand at 601.095 kb on + strand at 601.095 kb on + strand at 601.096 kb on - strand at 601.117 kb on - strand at 601.155 kb on + strand at 601.156 kb on - strand at 601.156 kb on - strand at 601.314 kb on + strand, within DDA3937_RS02720 at 601.314 kb on + strand, within DDA3937_RS02720 at 601.314 kb on + strand, within DDA3937_RS02720 at 601.314 kb on + strand, within DDA3937_RS02720 at 601.314 kb on + strand, within DDA3937_RS02720 at 601.314 kb on + strand, within DDA3937_RS02720 at 601.314 kb on + strand, within DDA3937_RS02720 at 601.314 kb on + strand, within DDA3937_RS02720 at 601.315 kb on - strand, within DDA3937_RS02720 at 601.315 kb on - strand, within DDA3937_RS02720 at 601.315 kb on - strand, within DDA3937_RS02720 at 601.315 kb on - strand, within DDA3937_RS02720 at 601.336 kb on + strand, within DDA3937_RS02720 at 601.336 kb on + strand, within DDA3937_RS02720 at 601.336 kb on + strand, within DDA3937_RS02720 at 601.336 kb on + strand, within DDA3937_RS02720 at 601.336 kb on + strand, within DDA3937_RS02720 at 601.337 kb on - strand, within DDA3937_RS02720 at 601.337 kb on - strand, within DDA3937_RS02720 at 601.337 kb on - strand, within DDA3937_RS02720 at 601.337 kb on - strand, within DDA3937_RS02720 at 601.337 kb on - strand, within DDA3937_RS02720 at 601.344 kb on + strand, within DDA3937_RS02720 at 601.344 kb on + strand, within DDA3937_RS02720 at 601.344 kb on + strand, within DDA3937_RS02720 at 601.344 kb on + strand, within DDA3937_RS02720 at 601.344 kb on + strand, within DDA3937_RS02720 at 601.344 kb on + strand, within DDA3937_RS02720 at 601.344 kb on + strand, within DDA3937_RS02720 at 601.344 kb on + strand, within DDA3937_RS02720 at 601.345 kb on - strand, within DDA3937_RS02720 at 601.345 kb on - strand, within DDA3937_RS02720 at 601.345 kb on - strand, within DDA3937_RS02720 at 601.345 kb on - strand, within DDA3937_RS02720 at 601.345 kb on - strand, within DDA3937_RS02720 at 601.345 kb on - strand, within DDA3937_RS02720 at 601.345 kb on - strand, within DDA3937_RS02720 at 601.404 kb on + strand, within DDA3937_RS02720 at 601.404 kb on + strand, within DDA3937_RS02720 at 601.405 kb on - strand, within DDA3937_RS02720 at 601.405 kb on - strand, within DDA3937_RS02720 at 601.405 kb on - strand, within DDA3937_RS02720 at 601.725 kb on + strand, within DDA3937_RS02720 at 601.726 kb on - strand, within DDA3937_RS02720 at 601.806 kb on - strand, within DDA3937_RS02720 at 601.822 kb on - strand, within DDA3937_RS02720 at 601.822 kb on - strand, within DDA3937_RS02720
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 598,652 + DDA3937_RS02705 0.71 -0.6 598,654 + DDA3937_RS02705 0.71 -1.6 598,654 + DDA3937_RS02705 0.71 +4.0 598,654 + DDA3937_RS02705 0.71 +0.6 598,654 + DDA3937_RS02705 0.71 -1.2 598,654 + DDA3937_RS02705 0.71 -1.1 598,777 + DDA3937_RS02705 0.78 -0.4 598,777 + DDA3937_RS02705 0.78 -0.3 598,777 + DDA3937_RS02705 0.78 +0.9 598,777 + DDA3937_RS02705 0.78 -0.6 598,777 + DDA3937_RS02705 0.78 -1.6 598,778 - DDA3937_RS02705 0.78 -0.4 598,778 - DDA3937_RS02705 0.78 -1.2 598,778 - DDA3937_RS02705 0.78 +0.9 598,778 - DDA3937_RS02705 0.78 +1.2 598,778 - DDA3937_RS02705 0.78 -0.8 598,846 + DDA3937_RS02705 0.82 -0.5 598,847 - DDA3937_RS02705 0.82 -1.1 598,847 - DDA3937_RS02705 0.82 -1.1 598,957 + DDA3937_RS02705 0.89 +0.9 598,957 + -1.4 598,957 + DDA3937_RS02705 0.89 -1.1 598,957 + DDA3937_RS02705 0.89 -0.8 598,957 + DDA3937_RS02705 0.89 -0.4 598,957 + DDA3937_RS02705 0.89 -1.4 598,957 + DDA3937_RS02705 0.89 -0.8 598,958 - DDA3937_RS02705 0.89 +0.3 598,958 - DDA3937_RS02705 0.89 -1.0 598,958 - DDA3937_RS02705 0.89 +0.4 598,960 + DDA3937_RS02705 0.89 +0.2 599,129 + +0.6 599,129 + -1.0 599,130 - +0.1 599,130 - +0.3 599,154 + +1.2 599,155 - +0.1 599,155 - -0.0 599,263 + DDA3937_RS02710 0.35 +0.1 599,263 + DDA3937_RS02710 0.35 -0.9 599,264 - DDA3937_RS02710 0.35 -1.5 599,299 + DDA3937_RS02710 0.44 +0.6 599,299 + DDA3937_RS02710 0.44 -1.0 599,299 + +2.2 599,299 + DDA3937_RS02710 0.44 -0.4 599,300 - DDA3937_RS02710 0.44 +2.2 599,314 - DDA3937_RS02710 0.48 +0.9 599,336 + DDA3937_RS02710 0.53 -1.1 599,337 - DDA3937_RS02710 0.53 -0.4 599,420 + DDA3937_RS02710 0.74 +0.8 599,420 + DDA3937_RS02710 0.74 -1.1 599,420 + DDA3937_RS02710 0.74 +0.6 599,421 - DDA3937_RS02710 0.74 -2.2 599,441 + DDA3937_RS02710 0.79 -3.2 599,441 + DDA3937_RS02710 0.79 +0.3 599,444 + DDA3937_RS02710 0.80 -0.0 599,444 + DDA3937_RS02710 0.80 -1.5 599,452 + DDA3937_RS02710 0.82 -0.0 599,453 - DDA3937_RS02710 0.82 -0.5 599,453 - DDA3937_RS02710 0.82 -1.7 599,459 + DDA3937_RS02710 0.84 -1.2 599,459 + DDA3937_RS02710 0.84 -1.5 599,460 - DDA3937_RS02710 0.84 -0.1 599,488 + -1.6 599,488 + -1.9 599,557 + +0.6 599,557 + -0.5 599,557 + +0.9 599,557 + -0.4 599,557 + -0.9 599,557 + -0.5 599,557 + +0.6 599,557 + -0.2 599,557 + -1.1 599,557 + -0.5 599,557 + -0.4 599,557 + -1.6 599,557 + -0.6 599,557 + +1.3 599,557 + +0.2 599,557 + -0.7 599,557 + +1.1 599,557 + -2.1 599,558 - +1.4 599,558 - -1.1 599,558 - -0.4 599,558 - -0.6 599,558 - -1.5 599,558 - +0.1 599,558 - +0.9 599,558 - +0.3 599,558 - +0.5 599,558 - +0.0 599,559 + +2.1 599,559 + +0.2 599,559 + -1.1 599,560 - +1.1 599,560 - +0.2 599,560 - -0.4 599,581 + -1.2 599,641 - -0.2 599,709 - -0.5 599,709 - -1.1 599,730 + -0.9 599,730 + -0.3 599,730 + -0.5 599,730 + -0.1 599,731 - -1.1 599,731 - +0.5 599,731 - -1.8 599,731 - +0.7 599,731 - +0.2 599,731 - -0.8 599,790 + DDA3937_RS02715 0.12 +0.9 599,790 + DDA3937_RS02715 0.12 -0.2 599,790 + DDA3937_RS02715 0.12 -0.2 599,791 - DDA3937_RS02715 0.12 -0.5 599,907 + DDA3937_RS02715 0.21 +0.3 599,907 + DDA3937_RS02715 0.21 -1.3 599,907 + DDA3937_RS02715 0.21 -0.6 599,966 + DDA3937_RS02715 0.25 -1.5 599,967 - DDA3937_RS02715 0.25 -0.5 600,016 + DDA3937_RS02715 0.29 -0.6 600,100 + DDA3937_RS02715 0.35 -0.1 600,223 - DDA3937_RS02715 0.45 -0.4 600,342 + DDA3937_RS02715 0.54 -0.3 600,342 + DDA3937_RS02715 0.54 -1.8 600,343 - DDA3937_RS02715 0.54 -1.6 600,415 + DDA3937_RS02715 0.60 -0.4 600,447 + DDA3937_RS02715 0.62 +1.0 600,447 + DDA3937_RS02715 0.62 -2.6 600,651 + DDA3937_RS02715 0.78 -0.4 600,651 + DDA3937_RS02715 0.78 -0.2 600,651 + DDA3937_RS02715 0.78 -0.8 600,651 + DDA3937_RS02715 0.78 -1.1 600,652 - DDA3937_RS02715 0.78 +0.3 600,681 + -0.8 600,681 + DDA3937_RS02715 0.80 -0.6 600,682 - DDA3937_RS02715 0.80 +1.6 600,726 + DDA3937_RS02715 0.83 -3.0 600,900 + -0.4 600,900 + -0.4 600,900 + +1.2 600,900 + +1.2 600,901 - +0.4 600,920 - +1.5 600,934 + -2.0 601,013 - +1.1 601,048 + +1.0 601,048 + -0.1 601,049 - +0.1 601,049 - -1.0 601,055 + -1.8 601,055 + -0.3 601,055 + -1.0 601,055 + -1.8 601,060 + -0.7 601,061 - -2.0 601,095 + -0.4 601,095 + -1.1 601,096 - -1.4 601,117 - +0.2 601,155 + -0.4 601,156 - -0.3 601,156 - -1.1 601,314 + DDA3937_RS02720 0.14 -0.1 601,314 + DDA3937_RS02720 0.14 -0.7 601,314 + DDA3937_RS02720 0.14 -1.1 601,314 + DDA3937_RS02720 0.14 -0.8 601,314 + DDA3937_RS02720 0.14 -0.2 601,314 + DDA3937_RS02720 0.14 +0.7 601,314 + DDA3937_RS02720 0.14 -0.4 601,314 + DDA3937_RS02720 0.14 -2.4 601,315 - DDA3937_RS02720 0.14 +0.0 601,315 - DDA3937_RS02720 0.14 -0.8 601,315 - DDA3937_RS02720 0.14 -0.9 601,315 - DDA3937_RS02720 0.14 +1.8 601,336 + DDA3937_RS02720 0.15 -0.4 601,336 + DDA3937_RS02720 0.15 +0.8 601,336 + DDA3937_RS02720 0.15 +0.1 601,336 + DDA3937_RS02720 0.15 -0.1 601,336 + DDA3937_RS02720 0.15 -2.5 601,337 - DDA3937_RS02720 0.15 -0.8 601,337 - DDA3937_RS02720 0.15 -0.9 601,337 - DDA3937_RS02720 0.15 -0.8 601,337 - DDA3937_RS02720 0.15 -0.5 601,337 - DDA3937_RS02720 0.15 -0.6 601,344 + DDA3937_RS02720 0.16 -1.0 601,344 + DDA3937_RS02720 0.16 +0.8 601,344 + DDA3937_RS02720 0.16 -0.6 601,344 + DDA3937_RS02720 0.16 -1.5 601,344 + DDA3937_RS02720 0.16 -2.2 601,344 + DDA3937_RS02720 0.16 -1.5 601,344 + DDA3937_RS02720 0.16 +0.2 601,344 + DDA3937_RS02720 0.16 -2.4 601,345 - DDA3937_RS02720 0.16 -0.4 601,345 - DDA3937_RS02720 0.16 +1.1 601,345 - DDA3937_RS02720 0.16 -1.0 601,345 - DDA3937_RS02720 0.16 -0.0 601,345 - DDA3937_RS02720 0.16 +0.7 601,345 - DDA3937_RS02720 0.16 +0.2 601,345 - DDA3937_RS02720 0.16 +0.8 601,404 + DDA3937_RS02720 0.20 -0.9 601,404 + DDA3937_RS02720 0.20 -0.8 601,405 - DDA3937_RS02720 0.20 +1.2 601,405 - DDA3937_RS02720 0.20 -1.8 601,405 - DDA3937_RS02720 0.20 +1.1 601,725 + DDA3937_RS02720 0.42 +0.5 601,726 - DDA3937_RS02720 0.42 -2.2 601,806 - DDA3937_RS02720 0.48 -0.5 601,822 - DDA3937_RS02720 0.49 +1.0 601,822 - DDA3937_RS02720 0.49 +0.8
Or see this region's nucleotide sequence