Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01940 and DDA3937_RS01945 are separated by 162 nucleotides DDA3937_RS01945 and DDA3937_RS01950 are separated by 74 nucleotides DDA3937_RS01950 and DDA3937_RS01955 are separated by 325 nucleotides DDA3937_RS01955 and DDA3937_RS01960 are separated by 39 nucleotides
DDA3937_RS01940: DDA3937_RS01940 - ornithine carbamoyltransferase, at 435,556 to 436,572
_RS01940
DDA3937_RS01945: DDA3937_RS01945 - ribonuclease E inhibitor RraB, at 436,735 to 437,163
_RS01945
DDA3937_RS01950: DDA3937_RS01950 - GNAT family N-acetyltransferase, at 437,238 to 437,741
_RS01950
DDA3937_RS01955: DDA3937_RS01955 - helix-turn-helix domain-containing protein, at 438,067 to 438,654
_RS01955
DDA3937_RS01960: DDA3937_RS01960 - GNAT family N-acetyltransferase, at 438,694 to 439,176
_RS01960
Position (kb) 437
438 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 436.271 kb on + strand, within DDA3937_RS01940 at 436.271 kb on + strand, within DDA3937_RS01940 at 436.272 kb on - strand, within DDA3937_RS01940 at 436.346 kb on + strand, within DDA3937_RS01940 at 436.347 kb on - strand, within DDA3937_RS01940 at 436.371 kb on - strand, within DDA3937_RS01940 at 436.371 kb on - strand, within DDA3937_RS01940 at 436.560 kb on - strand at 436.560 kb on - strand at 436.585 kb on + strand at 436.625 kb on - strand at 436.626 kb on + strand at 436.699 kb on + strand at 436.699 kb on + strand at 436.705 kb on + strand at 436.828 kb on + strand, within DDA3937_RS01945 at 436.829 kb on - strand, within DDA3937_RS01945 at 436.829 kb on - strand, within DDA3937_RS01945 at 436.829 kb on - strand, within DDA3937_RS01945 at 436.829 kb on - strand, within DDA3937_RS01945 at 436.829 kb on - strand, within DDA3937_RS01945 at 436.906 kb on + strand, within DDA3937_RS01945 at 436.971 kb on + strand, within DDA3937_RS01945 at 436.972 kb on - strand, within DDA3937_RS01945 at 437.056 kb on + strand, within DDA3937_RS01945 at 437.056 kb on + strand, within DDA3937_RS01945 at 437.056 kb on + strand, within DDA3937_RS01945 at 437.056 kb on + strand, within DDA3937_RS01945 at 437.057 kb on - strand, within DDA3937_RS01945 at 437.057 kb on - strand, within DDA3937_RS01945 at 437.074 kb on + strand, within DDA3937_RS01945 at 437.074 kb on + strand, within DDA3937_RS01945 at 437.074 kb on + strand, within DDA3937_RS01945 at 437.074 kb on + strand, within DDA3937_RS01945 at 437.074 kb on + strand, within DDA3937_RS01945 at 437.074 kb on + strand, within DDA3937_RS01945 at 437.074 kb on + strand, within DDA3937_RS01945 at 437.075 kb on - strand, within DDA3937_RS01945 at 437.131 kb on + strand at 437.131 kb on + strand at 437.131 kb on + strand at 437.131 kb on + strand at 437.131 kb on + strand at 437.132 kb on - strand at 437.132 kb on - strand at 437.132 kb on - strand at 437.132 kb on - strand at 437.132 kb on - strand at 437.132 kb on - strand at 437.132 kb on - strand at 437.132 kb on - strand at 437.132 kb on - strand at 437.239 kb on + strand at 437.239 kb on + strand at 437.239 kb on + strand at 437.239 kb on + strand at 437.240 kb on - strand at 437.240 kb on - strand at 437.241 kb on + strand at 437.241 kb on + strand at 437.241 kb on + strand at 437.241 kb on + strand at 437.241 kb on + strand at 437.242 kb on - strand at 437.242 kb on - strand at 437.242 kb on - strand at 437.242 kb on - strand at 437.291 kb on + strand, within DDA3937_RS01950 at 437.291 kb on + strand, within DDA3937_RS01950 at 437.291 kb on + strand, within DDA3937_RS01950 at 437.292 kb on - strand, within DDA3937_RS01950 at 437.368 kb on + strand, within DDA3937_RS01950 at 437.369 kb on - strand, within DDA3937_RS01950 at 437.369 kb on - strand, within DDA3937_RS01950 at 437.462 kb on - strand, within DDA3937_RS01950 at 437.462 kb on - strand, within DDA3937_RS01950 at 437.550 kb on + strand, within DDA3937_RS01950 at 437.579 kb on - strand, within DDA3937_RS01950 at 437.579 kb on - strand, within DDA3937_RS01950 at 437.579 kb on - strand, within DDA3937_RS01950 at 437.579 kb on - strand, within DDA3937_RS01950 at 437.579 kb on - strand, within DDA3937_RS01950 at 437.618 kb on + strand, within DDA3937_RS01950 at 437.619 kb on - strand, within DDA3937_RS01950 at 437.619 kb on - strand, within DDA3937_RS01950 at 437.620 kb on + strand, within DDA3937_RS01950 at 437.620 kb on + strand, within DDA3937_RS01950 at 437.620 kb on + strand, within DDA3937_RS01950 at 437.621 kb on - strand, within DDA3937_RS01950 at 437.621 kb on - strand, within DDA3937_RS01950 at 437.621 kb on - strand, within DDA3937_RS01950 at 437.812 kb on + strand at 437.812 kb on + strand at 437.812 kb on + strand at 437.812 kb on + strand at 437.812 kb on + strand at 437.812 kb on + strand at 437.813 kb on - strand at 437.813 kb on - strand at 437.813 kb on - strand at 437.813 kb on - strand at 437.813 kb on - strand at 437.816 kb on + strand at 437.816 kb on + strand at 437.817 kb on - strand at 437.817 kb on - strand at 437.817 kb on - strand at 437.817 kb on - strand at 437.828 kb on + strand at 437.828 kb on + strand at 437.828 kb on + strand at 437.829 kb on - strand at 437.829 kb on - strand at 437.829 kb on - strand at 437.832 kb on + strand at 437.832 kb on + strand at 437.833 kb on - strand at 437.833 kb on - strand at 437.833 kb on - strand at 437.833 kb on - strand at 437.833 kb on - strand at 437.843 kb on - strand at 437.843 kb on - strand at 437.844 kb on + strand at 437.844 kb on + strand at 437.844 kb on + strand at 437.844 kb on + strand at 437.844 kb on + strand at 437.844 kb on + strand at 437.844 kb on + strand at 437.844 kb on + strand at 437.844 kb on + strand at 437.844 kb on + strand at 437.844 kb on + strand at 437.844 kb on + strand at 437.845 kb on - strand at 437.845 kb on - strand at 437.845 kb on - strand at 437.845 kb on - strand at 437.845 kb on - strand at 437.845 kb on - strand at 437.845 kb on - strand at 437.845 kb on - strand at 437.848 kb on + strand at 437.848 kb on + strand at 437.881 kb on + strand at 438.079 kb on - strand at 438.271 kb on + strand, within DDA3937_RS01955 at 438.271 kb on + strand, within DDA3937_RS01955 at 438.279 kb on + strand, within DDA3937_RS01955 at 438.279 kb on + strand, within DDA3937_RS01955 at 438.280 kb on - strand, within DDA3937_RS01955 at 438.280 kb on - strand, within DDA3937_RS01955 at 438.280 kb on - strand, within DDA3937_RS01955 at 438.280 kb on - strand, within DDA3937_RS01955 at 438.388 kb on - strand, within DDA3937_RS01955 at 438.388 kb on - strand, within DDA3937_RS01955 at 438.499 kb on + strand, within DDA3937_RS01955 at 438.499 kb on + strand, within DDA3937_RS01955 at 438.499 kb on + strand, within DDA3937_RS01955 at 438.499 kb on + strand, within DDA3937_RS01955 at 438.499 kb on + strand, within DDA3937_RS01955 at 438.500 kb on - strand, within DDA3937_RS01955 at 438.500 kb on - strand, within DDA3937_RS01955 at 438.500 kb on - strand, within DDA3937_RS01955 at 438.500 kb on - strand, within DDA3937_RS01955 at 438.500 kb on - strand, within DDA3937_RS01955 at 438.500 kb on - strand, within DDA3937_RS01955 at 438.500 kb on - strand, within DDA3937_RS01955 at 438.584 kb on - strand, within DDA3937_RS01955 at 438.603 kb on + strand at 438.628 kb on + strand at 438.639 kb on + strand at 438.640 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 436,271 + DDA3937_RS01940 0.70 -2.0 436,271 + DDA3937_RS01940 0.70 -1.0 436,272 - DDA3937_RS01940 0.70 -2.5 436,346 + DDA3937_RS01940 0.78 -2.4 436,347 - DDA3937_RS01940 0.78 -0.5 436,371 - DDA3937_RS01940 0.80 -2.6 436,371 - DDA3937_RS01940 0.80 -1.0 436,560 - -0.8 436,560 - -0.1 436,585 + -1.5 436,625 - +0.8 436,626 + -1.0 436,699 + +0.5 436,699 + -0.4 436,705 + -0.3 436,828 + DDA3937_RS01945 0.22 -1.0 436,829 - DDA3937_RS01945 0.22 +0.3 436,829 - DDA3937_RS01945 0.22 -0.7 436,829 - DDA3937_RS01945 0.22 -1.9 436,829 - DDA3937_RS01945 0.22 +3.8 436,829 - DDA3937_RS01945 0.22 +2.4 436,906 + DDA3937_RS01945 0.40 +3.9 436,971 + DDA3937_RS01945 0.55 +0.0 436,972 - DDA3937_RS01945 0.55 +0.1 437,056 + DDA3937_RS01945 0.75 -1.3 437,056 + DDA3937_RS01945 0.75 -2.4 437,056 + DDA3937_RS01945 0.75 +4.1 437,056 + DDA3937_RS01945 0.75 -1.8 437,057 - DDA3937_RS01945 0.75 +0.7 437,057 - DDA3937_RS01945 0.75 +1.6 437,074 + DDA3937_RS01945 0.79 +1.4 437,074 + DDA3937_RS01945 0.79 -0.6 437,074 + DDA3937_RS01945 0.79 -0.3 437,074 + DDA3937_RS01945 0.79 +0.8 437,074 + DDA3937_RS01945 0.79 -1.4 437,074 + DDA3937_RS01945 0.79 +1.3 437,074 + DDA3937_RS01945 0.79 +0.2 437,075 - DDA3937_RS01945 0.79 -1.1 437,131 + -0.9 437,131 + +0.6 437,131 + -0.3 437,131 + -1.0 437,131 + -2.3 437,132 - -0.7 437,132 - +2.1 437,132 - -0.3 437,132 - +0.2 437,132 - -0.1 437,132 - -0.6 437,132 - -0.9 437,132 - +1.1 437,132 - +3.0 437,239 + -0.8 437,239 + -1.6 437,239 + +1.7 437,239 + -0.9 437,240 - +0.2 437,240 - -0.0 437,241 + -0.0 437,241 + -0.5 437,241 + -2.8 437,241 + -0.8 437,241 + -1.7 437,242 - -1.7 437,242 - +0.3 437,242 - -0.0 437,242 - +0.8 437,291 + DDA3937_RS01950 0.11 -0.7 437,291 + DDA3937_RS01950 0.11 -1.0 437,291 + DDA3937_RS01950 0.11 +0.8 437,292 - DDA3937_RS01950 0.11 -0.3 437,368 + DDA3937_RS01950 0.26 -1.7 437,369 - DDA3937_RS01950 0.26 +0.1 437,369 - DDA3937_RS01950 0.26 -0.3 437,462 - DDA3937_RS01950 0.44 -0.3 437,462 - DDA3937_RS01950 0.44 -1.6 437,550 + DDA3937_RS01950 0.62 -2.0 437,579 - DDA3937_RS01950 0.68 -2.1 437,579 - DDA3937_RS01950 0.68 +0.8 437,579 - DDA3937_RS01950 0.68 -0.3 437,579 - DDA3937_RS01950 0.68 -1.1 437,579 - DDA3937_RS01950 0.68 -1.0 437,618 + DDA3937_RS01950 0.75 -0.7 437,619 - DDA3937_RS01950 0.76 -1.5 437,619 - DDA3937_RS01950 0.76 -0.4 437,620 + DDA3937_RS01950 0.76 -0.3 437,620 + DDA3937_RS01950 0.76 +0.7 437,620 + DDA3937_RS01950 0.76 +0.5 437,621 - DDA3937_RS01950 0.76 -0.5 437,621 - DDA3937_RS01950 0.76 -1.1 437,621 - DDA3937_RS01950 0.76 +0.3 437,812 + -1.1 437,812 + -0.7 437,812 + -0.1 437,812 + +0.6 437,812 + -1.0 437,812 + +0.7 437,813 - -1.7 437,813 - +0.5 437,813 - +1.1 437,813 - -1.6 437,813 - -0.5 437,816 + -1.6 437,816 + +0.3 437,817 - +0.1 437,817 - +0.8 437,817 - -0.9 437,817 - +0.6 437,828 + -2.0 437,828 + +0.6 437,828 + -1.3 437,829 - -0.5 437,829 - -2.0 437,829 - +0.6 437,832 + +0.4 437,832 + +0.8 437,833 - -2.1 437,833 - -1.9 437,833 - -0.2 437,833 - -1.4 437,833 - +0.9 437,843 - -0.3 437,843 - -1.9 437,844 + +0.2 437,844 + -0.0 437,844 + -0.3 437,844 + -1.2 437,844 + +0.1 437,844 + -0.4 437,844 + +0.1 437,844 + -1.1 437,844 + +2.2 437,844 + +0.0 437,844 + -0.0 437,844 + +0.7 437,845 - +0.9 437,845 - -0.6 437,845 - +0.3 437,845 - -0.4 437,845 - -0.5 437,845 - -0.6 437,845 - -0.4 437,845 - +1.0 437,848 + -0.6 437,848 + +1.4 437,881 + -0.6 438,079 - +0.8 438,271 + DDA3937_RS01955 0.35 +1.1 438,271 + DDA3937_RS01955 0.35 -0.3 438,279 + DDA3937_RS01955 0.36 +1.4 438,279 + DDA3937_RS01955 0.36 +1.1 438,280 - DDA3937_RS01955 0.36 +0.2 438,280 - DDA3937_RS01955 0.36 -0.4 438,280 - DDA3937_RS01955 0.36 -1.1 438,280 - DDA3937_RS01955 0.36 +0.1 438,388 - DDA3937_RS01955 0.55 -1.1 438,388 - DDA3937_RS01955 0.55 -0.3 438,499 + DDA3937_RS01955 0.73 +0.6 438,499 + DDA3937_RS01955 0.73 -0.6 438,499 + DDA3937_RS01955 0.73 +1.5 438,499 + DDA3937_RS01955 0.73 +1.9 438,499 + DDA3937_RS01955 0.73 -1.1 438,500 - DDA3937_RS01955 0.74 -2.2 438,500 - DDA3937_RS01955 0.74 +0.2 438,500 - DDA3937_RS01955 0.74 -2.4 438,500 - DDA3937_RS01955 0.74 -1.5 438,500 - DDA3937_RS01955 0.74 -1.0 438,500 - DDA3937_RS01955 0.74 +0.5 438,500 - DDA3937_RS01955 0.74 +0.1 438,584 - DDA3937_RS01955 0.88 -0.4 438,603 + -0.7 438,628 + +1.7 438,639 + -0.3 438,640 - +0.6
Or see this region's nucleotide sequence