Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01860 and DDA3937_RS01865 are separated by 385 nucleotides DDA3937_RS01865 and DDA3937_RS01870 are separated by 108 nucleotides DDA3937_RS01870 and DDA3937_RS01875 are separated by 99 nucleotides
DDA3937_RS01860: DDA3937_RS01860 - type I-E CRISPR-associated protein Cse1/CasA, at 414,296 to 415,804
_RS01860
DDA3937_RS01865: DDA3937_RS01865 - YhbP family protein, at 416,190 to 416,642
_RS01865
DDA3937_RS01870: DDA3937_RS01870 - anaerobic ribonucleoside-triphosphate reductase-activating protein, at 416,751 to 417,215
_RS01870
DDA3937_RS01875: DDA3937_RS01875 - anaerobic ribonucleoside-triphosphate reductase, at 417,315 to 419,453
_RS01875
Position (kb) 416
417 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 415.250 kb on + strand, within DDA3937_RS01860 at 415.364 kb on + strand, within DDA3937_RS01860 at 415.365 kb on - strand, within DDA3937_RS01860 at 415.365 kb on - strand, within DDA3937_RS01860 at 415.376 kb on - strand, within DDA3937_RS01860 at 415.376 kb on - strand, within DDA3937_RS01860 at 415.407 kb on + strand, within DDA3937_RS01860 at 415.407 kb on + strand, within DDA3937_RS01860 at 415.407 kb on + strand, within DDA3937_RS01860 at 415.415 kb on + strand, within DDA3937_RS01860 at 415.416 kb on - strand, within DDA3937_RS01860 at 415.416 kb on - strand, within DDA3937_RS01860 at 415.510 kb on + strand, within DDA3937_RS01860 at 415.511 kb on - strand, within DDA3937_RS01860 at 415.562 kb on + strand, within DDA3937_RS01860 at 415.562 kb on + strand, within DDA3937_RS01860 at 415.562 kb on + strand, within DDA3937_RS01860 at 415.562 kb on + strand, within DDA3937_RS01860 at 415.562 kb on + strand, within DDA3937_RS01860 at 415.563 kb on - strand, within DDA3937_RS01860 at 415.563 kb on - strand, within DDA3937_RS01860 at 415.563 kb on - strand, within DDA3937_RS01860 at 415.625 kb on + strand, within DDA3937_RS01860 at 415.625 kb on + strand, within DDA3937_RS01860 at 415.625 kb on + strand, within DDA3937_RS01860 at 415.625 kb on + strand, within DDA3937_RS01860 at 415.625 kb on + strand, within DDA3937_RS01860 at 415.625 kb on + strand, within DDA3937_RS01860 at 415.625 kb on + strand, within DDA3937_RS01860 at 415.625 kb on + strand, within DDA3937_RS01860 at 415.626 kb on - strand, within DDA3937_RS01860 at 415.626 kb on - strand, within DDA3937_RS01860 at 415.626 kb on - strand, within DDA3937_RS01860 at 415.626 kb on - strand, within DDA3937_RS01860 at 415.626 kb on - strand, within DDA3937_RS01860 at 415.626 kb on - strand, within DDA3937_RS01860 at 415.626 kb on - strand, within DDA3937_RS01860 at 415.632 kb on - strand, within DDA3937_RS01860 at 415.677 kb on + strand at 415.677 kb on + strand at 415.678 kb on - strand at 415.678 kb on - strand at 415.678 kb on - strand at 415.678 kb on - strand at 415.678 kb on - strand at 415.678 kb on - strand at 415.678 kb on - strand at 415.714 kb on + strand at 415.714 kb on + strand at 415.715 kb on - strand at 415.715 kb on - strand at 415.715 kb on - strand at 415.717 kb on + strand at 415.718 kb on - strand at 415.718 kb on - strand at 415.718 kb on - strand at 415.753 kb on - strand at 415.870 kb on + strand at 415.889 kb on + strand at 415.916 kb on + strand at 415.916 kb on + strand at 415.917 kb on - strand at 415.917 kb on - strand at 415.917 kb on - strand at 415.920 kb on + strand at 415.920 kb on + strand at 415.920 kb on + strand at 415.920 kb on + strand at 415.920 kb on + strand at 415.920 kb on + strand at 415.920 kb on + strand at 415.920 kb on + strand at 415.921 kb on - strand at 415.921 kb on - strand at 415.921 kb on - strand at 415.921 kb on - strand at 415.975 kb on + strand at 415.975 kb on + strand at 415.975 kb on + strand at 415.975 kb on + strand at 415.975 kb on + strand at 415.976 kb on - strand at 415.976 kb on - strand at 415.976 kb on - strand at 415.976 kb on - strand at 416.071 kb on + strand at 416.090 kb on + strand at 416.112 kb on + strand at 416.112 kb on + strand at 416.112 kb on + strand at 416.113 kb on - strand at 416.113 kb on - strand at 416.113 kb on - strand at 416.113 kb on - strand at 416.129 kb on - strand at 416.164 kb on - strand at 416.204 kb on + strand at 416.205 kb on - strand at 416.226 kb on + strand at 416.278 kb on + strand, within DDA3937_RS01865 at 416.278 kb on + strand, within DDA3937_RS01865 at 416.278 kb on + strand, within DDA3937_RS01865 at 416.298 kb on + strand, within DDA3937_RS01865 at 416.298 kb on + strand, within DDA3937_RS01865 at 416.328 kb on + strand, within DDA3937_RS01865 at 416.367 kb on - strand, within DDA3937_RS01865 at 416.499 kb on + strand, within DDA3937_RS01865 at 416.499 kb on + strand, within DDA3937_RS01865 at 416.501 kb on + strand, within DDA3937_RS01865 at 416.501 kb on + strand, within DDA3937_RS01865 at 416.622 kb on - strand at 416.640 kb on + strand at 416.640 kb on + strand at 416.641 kb on - strand at 416.690 kb on - strand at 416.692 kb on - strand at 416.915 kb on + strand, within DDA3937_RS01870 at 416.915 kb on + strand, within DDA3937_RS01870 at 416.915 kb on + strand, within DDA3937_RS01870 at 416.915 kb on + strand, within DDA3937_RS01870 at 416.915 kb on + strand, within DDA3937_RS01870 at 416.916 kb on - strand, within DDA3937_RS01870 at 417.024 kb on + strand, within DDA3937_RS01870 at 417.024 kb on + strand, within DDA3937_RS01870 at 417.024 kb on + strand, within DDA3937_RS01870 at 417.025 kb on - strand, within DDA3937_RS01870 at 417.025 kb on - strand, within DDA3937_RS01870 at 417.025 kb on - strand, within DDA3937_RS01870 at 417.116 kb on - strand, within DDA3937_RS01870 at 417.158 kb on + strand, within DDA3937_RS01870 at 417.159 kb on - strand, within DDA3937_RS01870 at 417.199 kb on + strand at 417.199 kb on + strand at 417.199 kb on + strand at 417.200 kb on - strand at 417.208 kb on + strand at 417.209 kb on - strand at 417.209 kb on - strand at 417.473 kb on + strand at 417.507 kb on - strand at 417.521 kb on - strand at 417.550 kb on + strand, within DDA3937_RS01875 at 417.550 kb on + strand, within DDA3937_RS01875 at 417.551 kb on - strand, within DDA3937_RS01875 at 417.553 kb on + strand, within DDA3937_RS01875 at 417.568 kb on + strand, within DDA3937_RS01875 at 417.568 kb on + strand, within DDA3937_RS01875 at 417.568 kb on + strand, within DDA3937_RS01875 at 417.569 kb on - strand, within DDA3937_RS01875 at 417.574 kb on + strand, within DDA3937_RS01875 at 417.574 kb on + strand at 417.574 kb on + strand, within DDA3937_RS01875 at 417.575 kb on - strand, within DDA3937_RS01875 at 417.612 kb on + strand, within DDA3937_RS01875 at 417.612 kb on + strand, within DDA3937_RS01875 at 417.613 kb on - strand, within DDA3937_RS01875 at 417.613 kb on - strand, within DDA3937_RS01875 at 417.623 kb on - strand, within DDA3937_RS01875 at 417.639 kb on - strand, within DDA3937_RS01875
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 415,250 + DDA3937_RS01860 0.63 -1.7 415,364 + DDA3937_RS01860 0.71 -0.5 415,365 - DDA3937_RS01860 0.71 +0.9 415,365 - DDA3937_RS01860 0.71 +1.0 415,376 - DDA3937_RS01860 0.72 +0.3 415,376 - DDA3937_RS01860 0.72 +4.9 415,407 + DDA3937_RS01860 0.74 -0.4 415,407 + DDA3937_RS01860 0.74 -0.8 415,407 + DDA3937_RS01860 0.74 +1.2 415,415 + DDA3937_RS01860 0.74 -0.4 415,416 - DDA3937_RS01860 0.74 -1.2 415,416 - DDA3937_RS01860 0.74 +1.1 415,510 + DDA3937_RS01860 0.80 -0.5 415,511 - DDA3937_RS01860 0.81 -1.0 415,562 + DDA3937_RS01860 0.84 -0.9 415,562 + DDA3937_RS01860 0.84 -1.3 415,562 + DDA3937_RS01860 0.84 +0.5 415,562 + DDA3937_RS01860 0.84 +2.2 415,562 + DDA3937_RS01860 0.84 -1.7 415,563 - DDA3937_RS01860 0.84 -2.3 415,563 - DDA3937_RS01860 0.84 +0.2 415,563 - DDA3937_RS01860 0.84 -0.0 415,625 + DDA3937_RS01860 0.88 -0.4 415,625 + DDA3937_RS01860 0.88 +0.4 415,625 + DDA3937_RS01860 0.88 -1.7 415,625 + DDA3937_RS01860 0.88 -0.4 415,625 + DDA3937_RS01860 0.88 -2.3 415,625 + DDA3937_RS01860 0.88 -2.3 415,625 + DDA3937_RS01860 0.88 +0.6 415,625 + DDA3937_RS01860 0.88 -0.9 415,626 - DDA3937_RS01860 0.88 -1.6 415,626 - DDA3937_RS01860 0.88 -1.0 415,626 - DDA3937_RS01860 0.88 -1.5 415,626 - DDA3937_RS01860 0.88 +0.1 415,626 - DDA3937_RS01860 0.88 +0.6 415,626 - DDA3937_RS01860 0.88 +0.6 415,626 - DDA3937_RS01860 0.88 +0.1 415,632 - DDA3937_RS01860 0.89 -2.4 415,677 + -0.6 415,677 + -2.0 415,678 - -3.1 415,678 - +1.1 415,678 - -0.3 415,678 - +0.3 415,678 - +1.5 415,678 - +0.3 415,678 - -0.6 415,714 + +1.5 415,714 + -0.9 415,715 - -0.8 415,715 - +1.3 415,715 - -0.8 415,717 + +2.0 415,718 - -0.9 415,718 - -0.2 415,718 - -0.0 415,753 - -0.4 415,870 + -0.8 415,889 + -1.5 415,916 + -0.1 415,916 + -3.4 415,917 - -1.9 415,917 - +1.8 415,917 - -0.2 415,920 + -1.7 415,920 + +0.3 415,920 + -0.5 415,920 + -0.7 415,920 + -0.7 415,920 + -1.6 415,920 + +1.2 415,920 + +0.1 415,921 - +0.3 415,921 - -0.5 415,921 - -1.5 415,921 - +2.0 415,975 + +1.3 415,975 + -1.0 415,975 + -0.6 415,975 + -1.5 415,975 + -2.3 415,976 - +0.4 415,976 - +0.1 415,976 - -0.9 415,976 - -0.6 416,071 + -0.3 416,090 + -0.4 416,112 + -1.5 416,112 + +0.7 416,112 + -0.2 416,113 - -1.7 416,113 - -0.3 416,113 - -1.2 416,113 - +0.4 416,129 - -0.5 416,164 - -2.0 416,204 + -2.2 416,205 - -0.7 416,226 + -0.4 416,278 + DDA3937_RS01865 0.19 -1.3 416,278 + DDA3937_RS01865 0.19 -1.2 416,278 + DDA3937_RS01865 0.19 -0.0 416,298 + DDA3937_RS01865 0.24 -1.5 416,298 + DDA3937_RS01865 0.24 -0.4 416,328 + DDA3937_RS01865 0.30 -2.8 416,367 - DDA3937_RS01865 0.39 -0.1 416,499 + DDA3937_RS01865 0.68 -0.4 416,499 + DDA3937_RS01865 0.68 -2.4 416,501 + DDA3937_RS01865 0.69 -0.4 416,501 + DDA3937_RS01865 0.69 -2.4 416,622 - +0.5 416,640 + -0.5 416,640 + -0.6 416,641 - +0.4 416,690 - -1.0 416,692 - -0.4 416,915 + DDA3937_RS01870 0.35 -0.9 416,915 + DDA3937_RS01870 0.35 -0.8 416,915 + DDA3937_RS01870 0.35 -0.6 416,915 + DDA3937_RS01870 0.35 -1.6 416,915 + DDA3937_RS01870 0.35 +0.3 416,916 - DDA3937_RS01870 0.35 -1.6 417,024 + DDA3937_RS01870 0.59 -2.7 417,024 + DDA3937_RS01870 0.59 +0.2 417,024 + DDA3937_RS01870 0.59 -3.0 417,025 - DDA3937_RS01870 0.59 -2.8 417,025 - DDA3937_RS01870 0.59 -1.3 417,025 - DDA3937_RS01870 0.59 +0.2 417,116 - DDA3937_RS01870 0.78 -1.9 417,158 + DDA3937_RS01870 0.88 -2.4 417,159 - DDA3937_RS01870 0.88 -0.3 417,199 + -0.7 417,199 + -2.0 417,199 + -2.7 417,200 - -0.3 417,208 + -2.1 417,209 - -1.3 417,209 - -0.7 417,473 + -1.6 417,507 - -0.8 417,521 - -0.9 417,550 + DDA3937_RS01875 0.11 -0.4 417,550 + DDA3937_RS01875 0.11 -1.7 417,551 - DDA3937_RS01875 0.11 -0.4 417,553 + DDA3937_RS01875 0.11 -2.3 417,568 + DDA3937_RS01875 0.12 +1.2 417,568 + DDA3937_RS01875 0.12 -0.7 417,568 + DDA3937_RS01875 0.12 +0.3 417,569 - DDA3937_RS01875 0.12 -1.0 417,574 + DDA3937_RS01875 0.12 -2.4 417,574 + -0.7 417,574 + DDA3937_RS01875 0.12 -0.7 417,575 - DDA3937_RS01875 0.12 -1.2 417,612 + DDA3937_RS01875 0.14 -2.4 417,612 + DDA3937_RS01875 0.14 -1.4 417,613 - DDA3937_RS01875 0.14 -1.6 417,613 - DDA3937_RS01875 0.14 -1.2 417,623 - DDA3937_RS01875 0.14 -1.2 417,639 - DDA3937_RS01875 0.15 -1.4
Or see this region's nucleotide sequence