Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS01705

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS01695 and DDA3937_RS01700 are separated by 10 nucleotidesDDA3937_RS01700 and DDA3937_RS01705 are separated by 37 nucleotidesDDA3937_RS01705 and DDA3937_RS01710 overlap by 4 nucleotides DDA3937_RS01695: DDA3937_RS01695 - divisome-associated lipoprotein YraP, at 376,127 to 376,702 _RS01695 DDA3937_RS01700: DDA3937_RS01700 - DnaA initiator-associating protein DiaA, at 376,713 to 377,303 _RS01700 DDA3937_RS01705: DDA3937_RS01705 - YraN family protein, at 377,341 to 377,697 _RS01705 DDA3937_RS01710: DDA3937_RS01710 - penicillin-binding protein activator, at 377,694 to 379,745 _RS01710 Position (kb) 377 378Strain fitness (log2 ratio) -2 -1 0 1 2at 376.360 kb on + strand, within DDA3937_RS01695at 376.380 kb on + strand, within DDA3937_RS01695at 376.380 kb on + strand, within DDA3937_RS01695at 376.380 kb on + strand, within DDA3937_RS01695at 376.380 kb on + strand, within DDA3937_RS01695at 376.380 kb on + strand, within DDA3937_RS01695at 376.380 kb on + strand, within DDA3937_RS01695at 376.381 kb on - strand, within DDA3937_RS01695at 376.381 kb on - strand, within DDA3937_RS01695at 376.511 kb on + strand, within DDA3937_RS01695at 376.512 kb on - strand, within DDA3937_RS01695at 376.645 kb on + strandat 376.645 kb on + strandat 376.646 kb on - strandat 376.692 kb on + strandat 376.692 kb on + strandat 376.692 kb on + strandat 376.692 kb on + strandat 376.692 kb on + strandat 376.693 kb on - strandat 376.693 kb on - strandat 376.714 kb on + strandat 376.715 kb on - strandat 376.742 kb on + strandat 376.779 kb on - strand, within DDA3937_RS01700at 376.779 kb on - strand, within DDA3937_RS01700at 376.779 kb on - strand, within DDA3937_RS01700at 376.779 kb on - strand, within DDA3937_RS01700at 376.779 kb on - strand, within DDA3937_RS01700at 376.870 kb on + strand, within DDA3937_RS01700at 376.871 kb on - strand, within DDA3937_RS01700at 377.008 kb on + strand, within DDA3937_RS01700at 377.008 kb on + strand, within DDA3937_RS01700at 377.011 kb on - strand, within DDA3937_RS01700at 377.066 kb on + strand, within DDA3937_RS01700at 377.067 kb on - strand, within DDA3937_RS01700at 377.111 kb on + strand, within DDA3937_RS01700at 377.153 kb on + strand, within DDA3937_RS01700at 377.153 kb on + strand, within DDA3937_RS01700at 377.154 kb on - strand, within DDA3937_RS01700at 377.253 kb on + strandat 377.288 kb on + strandat 377.402 kb on - strand, within DDA3937_RS01705at 377.500 kb on - strand, within DDA3937_RS01705at 377.500 kb on - strand, within DDA3937_RS01705at 377.578 kb on - strand, within DDA3937_RS01705at 377.669 kb on + strandat 377.884 kb on + strandat 378.010 kb on + strand, within DDA3937_RS01710at 378.010 kb on + strand, within DDA3937_RS01710at 378.107 kb on + strand, within DDA3937_RS01710at 378.110 kb on + strand, within DDA3937_RS01710at 378.110 kb on + strand, within DDA3937_RS01710at 378.110 kb on + strand, within DDA3937_RS01710at 378.110 kb on + strand, within DDA3937_RS01710at 378.110 kb on + strand, within DDA3937_RS01710at 378.110 kb on + strand, within DDA3937_RS01710at 378.110 kb on + strand, within DDA3937_RS01710at 378.110 kb on + strand, within DDA3937_RS01710at 378.110 kb on + strand, within DDA3937_RS01710at 378.110 kb on + strand, within DDA3937_RS01710at 378.110 kb on + strand, within DDA3937_RS01710at 378.111 kb on - strand, within DDA3937_RS01710at 378.112 kb on + strand, within DDA3937_RS01710at 378.112 kb on + strand, within DDA3937_RS01710at 378.112 kb on + strand, within DDA3937_RS01710at 378.113 kb on - strand, within DDA3937_RS01710at 378.113 kb on - strand, within DDA3937_RS01710at 378.113 kb on - strand, within DDA3937_RS01710at 378.113 kb on - strand, within DDA3937_RS01710at 378.283 kb on + strand, within DDA3937_RS01710at 378.283 kb on + strand, within DDA3937_RS01710at 378.283 kb on + strand, within DDA3937_RS01710at 378.284 kb on - strand, within DDA3937_RS01710at 378.284 kb on - strand, within DDA3937_RS01710at 378.284 kb on - strand, within DDA3937_RS01710at 378.284 kb on - strand, within DDA3937_RS01710at 378.407 kb on + strand, within DDA3937_RS01710at 378.469 kb on + strand, within DDA3937_RS01710at 378.470 kb on - strand, within DDA3937_RS01710at 378.470 kb on - strand, within DDA3937_RS01710at 378.476 kb on + strand, within DDA3937_RS01710at 378.476 kb on + strand, within DDA3937_RS01710at 378.477 kb on - strand, within DDA3937_RS01710at 378.477 kb on - strand, within DDA3937_RS01710at 378.477 kb on - strand, within DDA3937_RS01710at 378.477 kb on - strand, within DDA3937_RS01710at 378.485 kb on + strand, within DDA3937_RS01710at 378.638 kb on + strand, within DDA3937_RS01710at 378.639 kb on - strand, within DDA3937_RS01710at 378.639 kb on - strand, within DDA3937_RS01710at 378.668 kb on + strand, within DDA3937_RS01710

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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376,360 + DDA3937_RS01695 0.40 -1.3
376,380 + DDA3937_RS01695 0.44 -0.5
376,380 + DDA3937_RS01695 0.44 +1.3
376,380 + DDA3937_RS01695 0.44 -0.6
376,380 + DDA3937_RS01695 0.44 +0.3
376,380 + DDA3937_RS01695 0.44 -0.4
376,380 + DDA3937_RS01695 0.44 -0.7
376,381 - DDA3937_RS01695 0.44 -2.2
376,381 - DDA3937_RS01695 0.44 -0.5
376,511 + DDA3937_RS01695 0.67 +0.1
376,512 - DDA3937_RS01695 0.67 -2.2
376,645 + -1.2
376,645 + -0.3
376,646 - +0.3
376,692 + -0.1
376,692 + -1.8
376,692 + -1.9
376,692 + -1.3
376,692 + -1.7
376,693 - -0.9
376,693 - -0.3
376,714 + -0.1
376,715 - -0.4
376,742 + -0.2
376,779 - DDA3937_RS01700 0.11 +0.6
376,779 - DDA3937_RS01700 0.11 +0.2
376,779 - DDA3937_RS01700 0.11 -0.1
376,779 - DDA3937_RS01700 0.11 -1.8
376,779 - DDA3937_RS01700 0.11 +1.5
376,870 + DDA3937_RS01700 0.27 +2.3
376,871 - DDA3937_RS01700 0.27 +0.6
377,008 + DDA3937_RS01700 0.50 +2.0
377,008 + DDA3937_RS01700 0.50 -0.4
377,011 - DDA3937_RS01700 0.50 -2.6
377,066 + DDA3937_RS01700 0.60 +0.6
377,067 - DDA3937_RS01700 0.60 -1.0
377,111 + DDA3937_RS01700 0.67 -1.6
377,153 + DDA3937_RS01700 0.74 +1.3
377,153 + DDA3937_RS01700 0.74 +2.2
377,154 - DDA3937_RS01700 0.75 +0.5
377,253 + -1.7
377,288 + -0.6
377,402 - DDA3937_RS01705 0.17 +0.9
377,500 - DDA3937_RS01705 0.45 +1.2
377,500 - DDA3937_RS01705 0.45 +0.7
377,578 - DDA3937_RS01705 0.66 -0.1
377,669 + +0.1
377,884 + +0.3
378,010 + DDA3937_RS01710 0.15 +0.6
378,010 + DDA3937_RS01710 0.15 -1.3
378,107 + DDA3937_RS01710 0.20 +0.1
378,110 + DDA3937_RS01710 0.20 -0.2
378,110 + DDA3937_RS01710 0.20 +0.6
378,110 + DDA3937_RS01710 0.20 +1.3
378,110 + DDA3937_RS01710 0.20 +0.1
378,110 + DDA3937_RS01710 0.20 +0.7
378,110 + DDA3937_RS01710 0.20 +0.5
378,110 + DDA3937_RS01710 0.20 +0.8
378,110 + DDA3937_RS01710 0.20 +1.9
378,110 + DDA3937_RS01710 0.20 +0.0
378,110 + DDA3937_RS01710 0.20 +2.2
378,110 + DDA3937_RS01710 0.20 +0.3
378,111 - DDA3937_RS01710 0.20 +0.3
378,112 + DDA3937_RS01710 0.20 +0.3
378,112 + DDA3937_RS01710 0.20 -1.0
378,112 + DDA3937_RS01710 0.20 +0.4
378,113 - DDA3937_RS01710 0.20 +0.1
378,113 - DDA3937_RS01710 0.20 -0.3
378,113 - DDA3937_RS01710 0.20 -1.3
378,113 - DDA3937_RS01710 0.20 -0.3
378,283 + DDA3937_RS01710 0.29 +0.1
378,283 + DDA3937_RS01710 0.29 +0.9
378,283 + DDA3937_RS01710 0.29 -0.2
378,284 - DDA3937_RS01710 0.29 -0.5
378,284 - DDA3937_RS01710 0.29 +0.4
378,284 - DDA3937_RS01710 0.29 -2.0
378,284 - DDA3937_RS01710 0.29 +0.5
378,407 + DDA3937_RS01710 0.35 +0.5
378,469 + DDA3937_RS01710 0.38 +0.2
378,470 - DDA3937_RS01710 0.38 -0.5
378,470 - DDA3937_RS01710 0.38 -0.7
378,476 + DDA3937_RS01710 0.38 -0.4
378,476 + DDA3937_RS01710 0.38 +0.8
378,477 - DDA3937_RS01710 0.38 +0.6
378,477 - DDA3937_RS01710 0.38 +1.3
378,477 - DDA3937_RS01710 0.38 +0.1
378,477 - DDA3937_RS01710 0.38 +0.2
378,485 + DDA3937_RS01710 0.39 +0.6
378,638 + DDA3937_RS01710 0.46 +0.4
378,639 - DDA3937_RS01710 0.46 -0.5
378,639 - DDA3937_RS01710 0.46 +0.6
378,668 + DDA3937_RS01710 0.47 +0.5

Or see this region's nucleotide sequence