Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01665 and DDA3937_RS01670 are separated by 718 nucleotides DDA3937_RS01670 and DDA3937_RS01675 are separated by 93 nucleotides
DDA3937_RS01665: DDA3937_RS01665 - glutamate synthase large subunit, at 364,462 to 368,922
_RS01665
DDA3937_RS01670: DDA3937_RS01670 - TIGR01212 family radical SAM protein, at 369,641 to 370,570
_RS01670
DDA3937_RS01675: DDA3937_RS01675 - aerobic respiration two-component sensor histidine kinase ArcB, at 370,664 to 373,003
_RS01675
Position (kb) 369
370
371 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 368.682 kb on - strand at 368.753 kb on - strand at 368.844 kb on + strand at 368.844 kb on + strand at 368.845 kb on - strand at 368.845 kb on - strand at 368.863 kb on + strand at 368.863 kb on + strand at 368.863 kb on + strand at 368.863 kb on + strand at 368.863 kb on + strand at 368.863 kb on + strand at 368.863 kb on + strand at 368.863 kb on + strand at 368.863 kb on + strand at 368.863 kb on + strand at 368.864 kb on - strand at 368.864 kb on - strand at 368.864 kb on - strand at 368.864 kb on - strand at 368.864 kb on - strand at 368.864 kb on - strand at 368.864 kb on - strand at 368.864 kb on - strand at 368.864 kb on - strand at 368.864 kb on - strand at 368.864 kb on - strand at 368.864 kb on - strand at 368.864 kb on - strand at 368.864 kb on - strand at 368.864 kb on - strand at 368.865 kb on + strand at 368.866 kb on - strand at 368.915 kb on + strand at 368.915 kb on + strand at 368.916 kb on - strand at 368.916 kb on - strand at 368.916 kb on - strand at 368.916 kb on - strand at 368.916 kb on - strand at 368.922 kb on + strand at 368.922 kb on + strand at 368.922 kb on + strand at 368.922 kb on + strand at 368.922 kb on + strand at 368.922 kb on + strand at 368.922 kb on + strand at 368.922 kb on + strand at 368.922 kb on + strand at 368.922 kb on + strand at 368.923 kb on - strand at 368.923 kb on - strand at 368.923 kb on - strand at 368.923 kb on - strand at 368.923 kb on - strand at 368.923 kb on - strand at 368.923 kb on - strand at 368.923 kb on - strand at 368.949 kb on + strand at 368.949 kb on + strand at 368.993 kb on + strand at 368.993 kb on + strand at 368.993 kb on + strand at 368.994 kb on - strand at 368.994 kb on - strand at 368.994 kb on - strand at 368.994 kb on - strand at 368.996 kb on + strand at 368.997 kb on - strand at 369.079 kb on + strand at 369.080 kb on - strand at 369.094 kb on - strand at 369.094 kb on - strand at 369.094 kb on - strand at 369.094 kb on - strand at 369.094 kb on - strand at 369.141 kb on + strand at 369.148 kb on + strand at 369.152 kb on + strand at 369.152 kb on + strand at 369.153 kb on - strand at 369.240 kb on + strand at 369.332 kb on + strand at 369.332 kb on + strand at 369.346 kb on - strand at 369.356 kb on + strand at 369.356 kb on + strand at 369.357 kb on - strand at 369.389 kb on - strand at 369.409 kb on + strand at 369.409 kb on + strand at 369.409 kb on + strand at 369.409 kb on + strand at 369.410 kb on - strand at 369.410 kb on - strand at 369.410 kb on - strand at 369.410 kb on - strand at 369.437 kb on + strand at 369.437 kb on + strand at 369.438 kb on - strand at 369.470 kb on + strand at 369.553 kb on + strand at 369.556 kb on - strand at 369.594 kb on + strand at 369.595 kb on - strand at 369.595 kb on - strand at 369.607 kb on + strand at 369.607 kb on + strand at 369.607 kb on + strand at 369.608 kb on - strand at 369.664 kb on + strand at 369.664 kb on + strand at 369.664 kb on + strand at 369.664 kb on + strand at 369.665 kb on - strand at 369.665 kb on - strand at 369.665 kb on - strand at 369.709 kb on + strand at 369.733 kb on + strand at 369.733 kb on + strand at 369.734 kb on - strand, within DDA3937_RS01670 at 369.734 kb on - strand, within DDA3937_RS01670 at 369.734 kb on - strand, within DDA3937_RS01670 at 369.776 kb on - strand, within DDA3937_RS01670 at 369.776 kb on - strand, within DDA3937_RS01670 at 369.776 kb on - strand, within DDA3937_RS01670 at 369.776 kb on - strand, within DDA3937_RS01670 at 369.776 kb on - strand, within DDA3937_RS01670 at 369.776 kb on - strand, within DDA3937_RS01670 at 369.878 kb on + strand, within DDA3937_RS01670 at 369.878 kb on + strand, within DDA3937_RS01670 at 369.888 kb on - strand, within DDA3937_RS01670 at 369.899 kb on + strand, within DDA3937_RS01670 at 369.899 kb on + strand, within DDA3937_RS01670 at 369.899 kb on + strand, within DDA3937_RS01670 at 369.900 kb on - strand, within DDA3937_RS01670 at 369.900 kb on - strand, within DDA3937_RS01670 at 369.900 kb on - strand, within DDA3937_RS01670 at 369.901 kb on + strand, within DDA3937_RS01670 at 369.901 kb on + strand, within DDA3937_RS01670 at 369.901 kb on + strand, within DDA3937_RS01670 at 369.902 kb on - strand, within DDA3937_RS01670 at 369.911 kb on + strand, within DDA3937_RS01670 at 369.941 kb on + strand, within DDA3937_RS01670 at 369.941 kb on + strand, within DDA3937_RS01670 at 369.941 kb on + strand, within DDA3937_RS01670 at 369.942 kb on - strand, within DDA3937_RS01670 at 369.942 kb on - strand, within DDA3937_RS01670 at 369.942 kb on - strand, within DDA3937_RS01670 at 369.942 kb on - strand, within DDA3937_RS01670 at 370.013 kb on - strand, within DDA3937_RS01670 at 370.037 kb on + strand, within DDA3937_RS01670 at 370.173 kb on + strand, within DDA3937_RS01670 at 370.361 kb on + strand, within DDA3937_RS01670 at 370.361 kb on + strand, within DDA3937_RS01670 at 370.361 kb on + strand, within DDA3937_RS01670 at 370.362 kb on - strand, within DDA3937_RS01670 at 370.362 kb on - strand, within DDA3937_RS01670 at 370.362 kb on - strand, within DDA3937_RS01670 at 370.362 kb on - strand, within DDA3937_RS01670 at 370.362 kb on - strand, within DDA3937_RS01670 at 370.362 kb on - strand, within DDA3937_RS01670 at 370.412 kb on + strand, within DDA3937_RS01670 at 370.413 kb on - strand, within DDA3937_RS01670 at 370.413 kb on - strand, within DDA3937_RS01670 at 370.420 kb on + strand, within DDA3937_RS01670 at 370.420 kb on + strand, within DDA3937_RS01670 at 370.421 kb on - strand, within DDA3937_RS01670 at 370.421 kb on - strand, within DDA3937_RS01670 at 370.421 kb on - strand, within DDA3937_RS01670 at 370.505 kb on + strand at 370.506 kb on - strand at 370.568 kb on + strand at 370.568 kb on + strand at 370.569 kb on - strand at 370.629 kb on + strand at 370.644 kb on + strand at 370.645 kb on - strand at 370.663 kb on + strand at 370.691 kb on + strand at 370.691 kb on + strand at 370.692 kb on - strand at 370.694 kb on + strand at 370.694 kb on + strand at 370.694 kb on + strand at 370.694 kb on + strand at 370.694 kb on + strand at 370.694 kb on + strand at 370.695 kb on - strand at 370.704 kb on + strand at 370.705 kb on - strand at 370.705 kb on - strand at 370.837 kb on + strand at 370.838 kb on - strand at 370.852 kb on - strand at 370.875 kb on - strand at 370.875 kb on - strand at 370.875 kb on - strand at 371.284 kb on + strand, within DDA3937_RS01675 at 371.345 kb on + strand, within DDA3937_RS01675 at 371.345 kb on + strand, within DDA3937_RS01675 at 371.345 kb on + strand, within DDA3937_RS01675 at 371.346 kb on - strand, within DDA3937_RS01675 at 371.346 kb on - strand, within DDA3937_RS01675 at 371.346 kb on - strand, within DDA3937_RS01675 at 371.346 kb on - strand, within DDA3937_RS01675 at 371.458 kb on + strand, within DDA3937_RS01675 at 371.459 kb on - strand, within DDA3937_RS01675 at 371.470 kb on + strand, within DDA3937_RS01675 at 371.470 kb on + strand, within DDA3937_RS01675 at 371.509 kb on + strand at 371.548 kb on + strand, within DDA3937_RS01675 at 371.548 kb on + strand, within DDA3937_RS01675 at 371.558 kb on - strand, within DDA3937_RS01675
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 368,682 - +0.2 368,753 - -2.1 368,844 + -1.0 368,844 + -0.2 368,845 - +1.3 368,845 - +0.5 368,863 + +1.3 368,863 + -1.3 368,863 + -1.8 368,863 + -0.9 368,863 + +0.2 368,863 + -0.6 368,863 + +2.1 368,863 + -2.0 368,863 + -0.2 368,863 + +0.4 368,864 - -0.8 368,864 - -1.8 368,864 - -2.1 368,864 - +2.1 368,864 - +1.5 368,864 - -1.5 368,864 - -0.6 368,864 - -0.0 368,864 - +0.4 368,864 - -1.3 368,864 - -1.4 368,864 - -1.7 368,864 - -1.4 368,864 - +0.4 368,864 - -2.3 368,865 + -0.6 368,866 - -0.0 368,915 + -1.5 368,915 + -1.0 368,916 - -0.0 368,916 - +0.7 368,916 - -0.2 368,916 - -1.0 368,916 - +0.3 368,922 + +0.1 368,922 + +0.7 368,922 + -0.9 368,922 + -0.0 368,922 + -1.2 368,922 + -0.7 368,922 + -2.3 368,922 + -0.7 368,922 + -1.2 368,922 + +0.7 368,923 - -0.3 368,923 - -0.1 368,923 - -0.2 368,923 - -0.0 368,923 - -2.2 368,923 - -1.7 368,923 - -0.6 368,923 - -1.5 368,949 + -1.1 368,949 + -2.3 368,993 + -0.1 368,993 + +0.8 368,993 + +0.7 368,994 - -0.7 368,994 - -0.4 368,994 - -0.2 368,994 - -1.2 368,996 + +0.1 368,997 - +0.4 369,079 + -1.2 369,080 - -0.6 369,094 - -0.1 369,094 - -2.7 369,094 - +0.6 369,094 - -2.0 369,094 - -0.0 369,141 + -0.7 369,148 + -0.2 369,152 + -0.5 369,152 + -0.3 369,153 - -0.8 369,240 + +3.1 369,332 + -1.1 369,332 + -1.1 369,346 - +1.0 369,356 + -1.3 369,356 + +2.5 369,357 - -0.4 369,389 - -0.1 369,409 + +0.3 369,409 + -0.0 369,409 + -0.0 369,409 + +0.4 369,410 - -0.1 369,410 - -0.3 369,410 - -0.1 369,410 - -0.1 369,437 + +3.1 369,437 + +1.0 369,438 - +1.1 369,470 + -1.0 369,553 + -0.8 369,556 - +1.0 369,594 + +0.2 369,595 - +0.4 369,595 - -1.2 369,607 + -0.9 369,607 + -0.6 369,607 + -3.1 369,608 - -1.9 369,664 + +0.1 369,664 + -2.5 369,664 + +1.3 369,664 + +2.0 369,665 - -0.8 369,665 - -0.9 369,665 - +0.6 369,709 + -0.4 369,733 + -0.5 369,733 + -0.7 369,734 - DDA3937_RS01670 0.10 +0.7 369,734 - DDA3937_RS01670 0.10 -0.3 369,734 - DDA3937_RS01670 0.10 -0.6 369,776 - DDA3937_RS01670 0.15 +0.6 369,776 - DDA3937_RS01670 0.15 +0.1 369,776 - DDA3937_RS01670 0.15 +0.1 369,776 - DDA3937_RS01670 0.15 -1.3 369,776 - DDA3937_RS01670 0.15 -0.2 369,776 - DDA3937_RS01670 0.15 +0.3 369,878 + DDA3937_RS01670 0.25 +3.8 369,878 + DDA3937_RS01670 0.25 +2.1 369,888 - DDA3937_RS01670 0.27 -0.8 369,899 + DDA3937_RS01670 0.28 -0.4 369,899 + DDA3937_RS01670 0.28 -0.7 369,899 + DDA3937_RS01670 0.28 +0.1 369,900 - DDA3937_RS01670 0.28 -1.4 369,900 - DDA3937_RS01670 0.28 -0.7 369,900 - DDA3937_RS01670 0.28 -0.2 369,901 + DDA3937_RS01670 0.28 -1.5 369,901 + DDA3937_RS01670 0.28 +1.0 369,901 + DDA3937_RS01670 0.28 +2.2 369,902 - DDA3937_RS01670 0.28 -0.1 369,911 + DDA3937_RS01670 0.29 +0.2 369,941 + DDA3937_RS01670 0.32 +0.6 369,941 + DDA3937_RS01670 0.32 +0.2 369,941 + DDA3937_RS01670 0.32 -1.8 369,942 - DDA3937_RS01670 0.32 -0.2 369,942 - DDA3937_RS01670 0.32 -1.3 369,942 - DDA3937_RS01670 0.32 +2.3 369,942 - DDA3937_RS01670 0.32 -0.4 370,013 - DDA3937_RS01670 0.40 +0.3 370,037 + DDA3937_RS01670 0.43 +1.3 370,173 + DDA3937_RS01670 0.57 -0.9 370,361 + DDA3937_RS01670 0.77 +0.2 370,361 + DDA3937_RS01670 0.77 +0.1 370,361 + DDA3937_RS01670 0.77 -0.2 370,362 - DDA3937_RS01670 0.78 +1.9 370,362 - DDA3937_RS01670 0.78 +1.3 370,362 - DDA3937_RS01670 0.78 -0.0 370,362 - DDA3937_RS01670 0.78 +0.6 370,362 - DDA3937_RS01670 0.78 -1.9 370,362 - DDA3937_RS01670 0.78 +0.4 370,412 + DDA3937_RS01670 0.83 +2.5 370,413 - DDA3937_RS01670 0.83 -0.9 370,413 - DDA3937_RS01670 0.83 +0.1 370,420 + DDA3937_RS01670 0.84 +0.8 370,420 + DDA3937_RS01670 0.84 -1.1 370,421 - DDA3937_RS01670 0.84 -0.5 370,421 - DDA3937_RS01670 0.84 -0.9 370,421 - DDA3937_RS01670 0.84 +0.1 370,505 + +0.1 370,506 - +0.4 370,568 + +2.3 370,568 + +1.3 370,569 - +1.0 370,629 + -1.2 370,644 + +0.5 370,645 - -3.3 370,663 + -0.8 370,691 + -2.7 370,691 + -1.4 370,692 - -1.1 370,694 + +1.5 370,694 + +0.1 370,694 + +5.9 370,694 + -3.2 370,694 + -0.5 370,694 + +0.0 370,695 - -0.4 370,704 + +1.3 370,705 - -1.3 370,705 - -1.2 370,837 + -0.0 370,838 - -1.5 370,852 - -0.5 370,875 - -0.6 370,875 - -0.7 370,875 - +0.1 371,284 + DDA3937_RS01675 0.26 -1.3 371,345 + DDA3937_RS01675 0.29 -0.5 371,345 + DDA3937_RS01675 0.29 -0.9 371,345 + DDA3937_RS01675 0.29 +0.4 371,346 - DDA3937_RS01675 0.29 +0.2 371,346 - DDA3937_RS01675 0.29 -0.5 371,346 - DDA3937_RS01675 0.29 -0.8 371,346 - DDA3937_RS01675 0.29 -0.7 371,458 + DDA3937_RS01675 0.34 +0.8 371,459 - DDA3937_RS01675 0.34 +0.9 371,470 + DDA3937_RS01675 0.34 +0.1 371,470 + DDA3937_RS01675 0.34 -1.6 371,509 + +0.7 371,548 + DDA3937_RS01675 0.38 -0.8 371,548 + DDA3937_RS01675 0.38 -0.8 371,558 - DDA3937_RS01675 0.38 -2.9
Or see this region's nucleotide sequence