Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01480 and DDA3937_RS01485 are separated by 6 nucleotides DDA3937_RS01485 and DDA3937_RS01490 are separated by 116 nucleotides DDA3937_RS01490 and DDA3937_RS01495 are separated by 403 nucleotides
DDA3937_RS01480: DDA3937_RS01480 - p-hydroxybenzoic acid efflux pump subunit AaeB, at 332,435 to 334,384
_RS01480
DDA3937_RS01485: DDA3937_RS01485 - DUF1543 domain-containing protein, at 334,391 to 334,891
_RS01485
DDA3937_RS01490: DDA3937_RS01490 - LysE family transporter, at 335,008 to 335,634
_RS01490
DDA3937_RS01495: DDA3937_RS01495 - ribosome-associated protein, at 336,038 to 336,586
_RS01495
Position (kb) 335
336 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 334.052 kb on + strand, within DDA3937_RS01480 at 334.052 kb on + strand, within DDA3937_RS01480 at 334.052 kb on + strand, within DDA3937_RS01480 at 334.053 kb on - strand, within DDA3937_RS01480 at 334.053 kb on - strand, within DDA3937_RS01480 at 334.053 kb on - strand, within DDA3937_RS01480 at 334.103 kb on + strand, within DDA3937_RS01480 at 334.104 kb on - strand, within DDA3937_RS01480 at 334.281 kb on - strand at 334.281 kb on - strand at 334.290 kb on + strand at 334.291 kb on - strand at 334.291 kb on - strand at 334.392 kb on + strand at 334.393 kb on - strand at 334.404 kb on + strand at 334.428 kb on - strand at 334.610 kb on + strand, within DDA3937_RS01485 at 334.610 kb on + strand, within DDA3937_RS01485 at 334.611 kb on - strand, within DDA3937_RS01485 at 334.646 kb on - strand, within DDA3937_RS01485 at 334.699 kb on + strand, within DDA3937_RS01485 at 334.704 kb on + strand, within DDA3937_RS01485 at 334.731 kb on + strand, within DDA3937_RS01485 at 334.731 kb on + strand, within DDA3937_RS01485 at 334.731 kb on + strand, within DDA3937_RS01485 at 334.731 kb on + strand, within DDA3937_RS01485 at 334.731 kb on + strand, within DDA3937_RS01485 at 334.731 kb on + strand, within DDA3937_RS01485 at 334.731 kb on + strand, within DDA3937_RS01485 at 334.731 kb on + strand, within DDA3937_RS01485 at 334.731 kb on + strand, within DDA3937_RS01485 at 334.731 kb on + strand, within DDA3937_RS01485 at 334.731 kb on + strand, within DDA3937_RS01485 at 334.731 kb on + strand, within DDA3937_RS01485 at 334.731 kb on + strand, within DDA3937_RS01485 at 334.731 kb on + strand, within DDA3937_RS01485 at 334.731 kb on + strand, within DDA3937_RS01485 at 334.731 kb on + strand, within DDA3937_RS01485 at 334.732 kb on - strand, within DDA3937_RS01485 at 334.732 kb on - strand, within DDA3937_RS01485 at 334.732 kb on - strand, within DDA3937_RS01485 at 334.732 kb on - strand, within DDA3937_RS01485 at 334.732 kb on - strand, within DDA3937_RS01485 at 334.735 kb on + strand, within DDA3937_RS01485 at 334.869 kb on + strand at 334.869 kb on + strand at 334.869 kb on + strand at 334.869 kb on + strand at 334.869 kb on + strand at 334.869 kb on + strand at 334.869 kb on + strand at 334.869 kb on + strand at 334.869 kb on + strand at 334.869 kb on + strand at 334.869 kb on + strand at 334.869 kb on + strand at 334.870 kb on - strand at 334.872 kb on + strand at 334.872 kb on + strand at 334.872 kb on + strand at 334.872 kb on + strand at 334.872 kb on + strand at 334.872 kb on + strand at 334.872 kb on + strand at 334.873 kb on - strand at 334.873 kb on - strand at 334.873 kb on - strand at 334.876 kb on + strand at 334.876 kb on + strand at 334.876 kb on + strand at 334.876 kb on + strand at 334.876 kb on + strand at 334.876 kb on + strand at 334.876 kb on + strand at 334.876 kb on + strand at 334.876 kb on + strand at 334.876 kb on + strand at 334.876 kb on + strand at 334.876 kb on + strand at 334.876 kb on + strand at 334.876 kb on + strand at 334.876 kb on + strand at 334.876 kb on + strand at 334.876 kb on + strand at 334.876 kb on + strand at 334.876 kb on + strand at 334.876 kb on + strand at 334.876 kb on + strand at 334.876 kb on + strand at 334.876 kb on + strand at 334.876 kb on + strand at 334.876 kb on + strand at 334.876 kb on + strand at 334.876 kb on + strand at 334.876 kb on + strand at 334.876 kb on + strand at 334.877 kb on - strand at 334.877 kb on - strand at 334.877 kb on - strand at 334.877 kb on - strand at 334.877 kb on - strand at 334.880 kb on + strand at 334.880 kb on + strand at 334.880 kb on + strand at 334.881 kb on - strand at 334.881 kb on - strand at 334.881 kb on - strand at 334.881 kb on - strand at 334.881 kb on - strand at 334.943 kb on + strand at 334.988 kb on + strand at 335.007 kb on - strand at 335.032 kb on + strand at 335.032 kb on + strand at 335.089 kb on - strand, within DDA3937_RS01490 at 335.231 kb on + strand, within DDA3937_RS01490 at 335.232 kb on - strand, within DDA3937_RS01490 at 335.252 kb on - strand, within DDA3937_RS01490 at 335.252 kb on - strand, within DDA3937_RS01490 at 335.268 kb on + strand, within DDA3937_RS01490 at 335.350 kb on + strand, within DDA3937_RS01490 at 335.350 kb on + strand, within DDA3937_RS01490 at 335.365 kb on - strand, within DDA3937_RS01490 at 335.365 kb on - strand, within DDA3937_RS01490 at 335.365 kb on - strand, within DDA3937_RS01490 at 335.509 kb on + strand, within DDA3937_RS01490 at 335.509 kb on + strand, within DDA3937_RS01490 at 335.509 kb on + strand, within DDA3937_RS01490 at 335.510 kb on - strand, within DDA3937_RS01490 at 335.510 kb on - strand, within DDA3937_RS01490 at 335.586 kb on + strand at 335.587 kb on - strand at 335.587 kb on - strand at 335.632 kb on + strand at 335.633 kb on - strand at 335.633 kb on - strand at 335.689 kb on + strand at 335.690 kb on - strand at 335.745 kb on - strand at 335.745 kb on - strand at 336.020 kb on + strand at 336.020 kb on + strand at 336.020 kb on + strand at 336.020 kb on + strand at 336.020 kb on + strand at 336.020 kb on + strand at 336.020 kb on + strand at 336.020 kb on + strand at 336.021 kb on - strand at 336.021 kb on - strand at 336.021 kb on - strand at 336.021 kb on - strand at 336.021 kb on - strand at 336.021 kb on - strand at 336.021 kb on - strand at 336.036 kb on + strand at 336.036 kb on + strand at 336.066 kb on + strand at 336.067 kb on - strand at 336.067 kb on - strand at 336.091 kb on + strand at 336.091 kb on + strand at 336.092 kb on - strand at 336.092 kb on - strand at 336.127 kb on + strand, within DDA3937_RS01495 at 336.128 kb on - strand, within DDA3937_RS01495 at 336.128 kb on - strand, within DDA3937_RS01495 at 336.131 kb on + strand, within DDA3937_RS01495 at 336.131 kb on + strand, within DDA3937_RS01495 at 336.132 kb on - strand, within DDA3937_RS01495 at 336.132 kb on - strand, within DDA3937_RS01495 at 336.132 kb on - strand, within DDA3937_RS01495 at 336.132 kb on - strand, within DDA3937_RS01495 at 336.132 kb on - strand, within DDA3937_RS01495 at 336.252 kb on - strand, within DDA3937_RS01495 at 336.252 kb on - strand, within DDA3937_RS01495 at 336.365 kb on - strand, within DDA3937_RS01495 at 336.515 kb on + strand, within DDA3937_RS01495 at 336.515 kb on + strand, within DDA3937_RS01495 at 336.515 kb on + strand, within DDA3937_RS01495 at 336.516 kb on - strand, within DDA3937_RS01495 at 336.516 kb on - strand, within DDA3937_RS01495 at 336.516 kb on - strand, within DDA3937_RS01495 at 336.600 kb on + strand at 336.601 kb on - strand at 336.616 kb on + strand at 336.617 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 334,052 + DDA3937_RS01480 0.83 -0.8 334,052 + DDA3937_RS01480 0.83 -0.1 334,052 + DDA3937_RS01480 0.83 +0.7 334,053 - DDA3937_RS01480 0.83 -0.6 334,053 - DDA3937_RS01480 0.83 +1.0 334,053 - DDA3937_RS01480 0.83 +0.4 334,103 + DDA3937_RS01480 0.86 +1.3 334,104 - DDA3937_RS01480 0.86 -1.4 334,281 - +0.8 334,281 - +2.3 334,290 + -1.9 334,291 - -0.4 334,291 - +1.3 334,392 + -1.1 334,393 - +2.5 334,404 + -0.6 334,428 - +0.1 334,610 + DDA3937_RS01485 0.44 -0.4 334,610 + DDA3937_RS01485 0.44 +0.7 334,611 - DDA3937_RS01485 0.44 -0.5 334,646 - DDA3937_RS01485 0.51 -0.9 334,699 + DDA3937_RS01485 0.61 -1.8 334,704 + DDA3937_RS01485 0.62 -0.6 334,731 + DDA3937_RS01485 0.68 -0.1 334,731 + DDA3937_RS01485 0.68 +0.3 334,731 + DDA3937_RS01485 0.68 -0.3 334,731 + DDA3937_RS01485 0.68 -0.6 334,731 + DDA3937_RS01485 0.68 -0.6 334,731 + DDA3937_RS01485 0.68 -0.7 334,731 + DDA3937_RS01485 0.68 -0.4 334,731 + DDA3937_RS01485 0.68 -1.2 334,731 + DDA3937_RS01485 0.68 -0.3 334,731 + DDA3937_RS01485 0.68 -0.4 334,731 + DDA3937_RS01485 0.68 +0.1 334,731 + DDA3937_RS01485 0.68 -1.9 334,731 + DDA3937_RS01485 0.68 -0.1 334,731 + DDA3937_RS01485 0.68 -0.5 334,731 + DDA3937_RS01485 0.68 -0.5 334,731 + DDA3937_RS01485 0.68 -0.6 334,732 - DDA3937_RS01485 0.68 +0.6 334,732 - DDA3937_RS01485 0.68 +0.2 334,732 - DDA3937_RS01485 0.68 -1.3 334,732 - DDA3937_RS01485 0.68 +1.0 334,732 - DDA3937_RS01485 0.68 -0.1 334,735 + DDA3937_RS01485 0.69 -0.2 334,869 + +1.3 334,869 + -2.4 334,869 + +0.5 334,869 + -0.7 334,869 + +0.5 334,869 + -0.3 334,869 + -0.2 334,869 + -0.5 334,869 + -0.8 334,869 + -0.0 334,869 + +0.4 334,869 + +0.1 334,870 - +0.8 334,872 + -0.5 334,872 + -0.4 334,872 + -0.4 334,872 + +2.0 334,872 + -0.1 334,872 + +0.0 334,872 + -0.2 334,873 - -0.7 334,873 - -0.7 334,873 - -0.7 334,876 + -0.3 334,876 + -0.4 334,876 + +0.2 334,876 + -1.2 334,876 + +0.9 334,876 + -0.6 334,876 + +0.0 334,876 + -0.4 334,876 + +1.4 334,876 + -0.9 334,876 + -0.7 334,876 + +0.3 334,876 + +0.4 334,876 + -1.0 334,876 + -0.1 334,876 + -0.0 334,876 + -1.2 334,876 + +1.8 334,876 + -0.1 334,876 + -0.1 334,876 + -0.5 334,876 + -0.2 334,876 + -0.4 334,876 + +0.1 334,876 + -0.3 334,876 + -0.5 334,876 + +0.0 334,876 + +0.2 334,876 + -0.2 334,877 - -1.0 334,877 - -0.8 334,877 - -1.0 334,877 - -2.1 334,877 - +0.8 334,880 + +1.0 334,880 + -0.2 334,880 + +0.1 334,881 - -1.0 334,881 - -1.3 334,881 - -3.2 334,881 - -1.1 334,881 - -1.3 334,943 + -0.4 334,988 + +0.0 335,007 - -1.4 335,032 + +0.1 335,032 + -0.3 335,089 - DDA3937_RS01490 0.13 +0.3 335,231 + DDA3937_RS01490 0.36 -1.3 335,232 - DDA3937_RS01490 0.36 -1.0 335,252 - DDA3937_RS01490 0.39 +0.5 335,252 - DDA3937_RS01490 0.39 -0.6 335,268 + DDA3937_RS01490 0.41 +0.1 335,350 + DDA3937_RS01490 0.55 -1.5 335,350 + DDA3937_RS01490 0.55 -3.2 335,365 - DDA3937_RS01490 0.57 +0.3 335,365 - DDA3937_RS01490 0.57 -2.4 335,365 - DDA3937_RS01490 0.57 +0.9 335,509 + DDA3937_RS01490 0.80 -2.2 335,509 + DDA3937_RS01490 0.80 -0.1 335,509 + DDA3937_RS01490 0.80 +0.3 335,510 - DDA3937_RS01490 0.80 -1.1 335,510 - DDA3937_RS01490 0.80 -0.1 335,586 + +0.3 335,587 - -0.3 335,587 - +1.1 335,632 + -1.8 335,633 - +0.7 335,633 - -0.3 335,689 + -0.7 335,690 - -0.1 335,745 - +3.3 335,745 - -0.6 336,020 + -0.7 336,020 + -0.9 336,020 + +0.3 336,020 + -1.0 336,020 + +0.7 336,020 + -1.1 336,020 + +0.1 336,020 + +0.5 336,021 - -1.9 336,021 - -1.3 336,021 - +0.2 336,021 - -0.8 336,021 - -0.0 336,021 - -0.7 336,021 - -1.6 336,036 + -1.3 336,036 + +0.3 336,066 + -1.1 336,067 - +0.9 336,067 - -1.5 336,091 + -0.7 336,091 + -0.3 336,092 - -1.6 336,092 - -0.2 336,127 + DDA3937_RS01495 0.16 -0.5 336,128 - DDA3937_RS01495 0.16 -1.1 336,128 - DDA3937_RS01495 0.16 -0.3 336,131 + DDA3937_RS01495 0.17 -0.3 336,131 + DDA3937_RS01495 0.17 -3.5 336,132 - DDA3937_RS01495 0.17 -0.5 336,132 - DDA3937_RS01495 0.17 -0.1 336,132 - DDA3937_RS01495 0.17 +1.3 336,132 - DDA3937_RS01495 0.17 -1.2 336,132 - DDA3937_RS01495 0.17 -0.4 336,252 - DDA3937_RS01495 0.39 +0.0 336,252 - DDA3937_RS01495 0.39 -0.1 336,365 - DDA3937_RS01495 0.60 -0.2 336,515 + DDA3937_RS01495 0.87 -0.1 336,515 + DDA3937_RS01495 0.87 +0.3 336,515 + DDA3937_RS01495 0.87 -2.8 336,516 - DDA3937_RS01495 0.87 -1.3 336,516 - DDA3937_RS01495 0.87 -1.4 336,516 - DDA3937_RS01495 0.87 -2.6 336,600 + -2.0 336,601 - -0.6 336,616 + -2.4 336,617 - -0.8
Or see this region's nucleotide sequence