Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00940 and DDA3937_RS00945 are separated by 116 nucleotides DDA3937_RS00945 and DDA3937_RS00950 are separated by 188 nucleotides DDA3937_RS00950 and DDA3937_RS00955 are separated by 2 nucleotides
DDA3937_RS00940: DDA3937_RS00940 - 50S ribosomal protein L31, at 216,863 to 217,078
_RS00940
DDA3937_RS00945: DDA3937_RS00945 - met regulon transcriptional regulator MetJ, at 217,195 to 217,512
_RS00945
DDA3937_RS00950: DDA3937_RS00950 - cystathionine gamma-synthase, at 217,701 to 218,861
_RS00950
DDA3937_RS00955: DDA3937_RS00955 - bifunctional aspartate kinase/homoserine dehydrogenase II, at 218,864 to 221,299
_RS00955
Position (kb) 217
218
219 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 217.200 kb on - strand at 217.236 kb on + strand, within DDA3937_RS00945 at 217.237 kb on - strand, within DDA3937_RS00945 at 217.237 kb on - strand, within DDA3937_RS00945 at 217.237 kb on - strand, within DDA3937_RS00945 at 217.237 kb on - strand, within DDA3937_RS00945 at 217.237 kb on - strand, within DDA3937_RS00945 at 217.567 kb on - strand at 217.579 kb on + strand at 217.580 kb on - strand at 217.580 kb on - strand at 217.583 kb on - strand at 217.584 kb on + strand at 217.585 kb on - strand at 217.585 kb on - strand at 217.670 kb on + strand at 217.670 kb on + strand at 217.670 kb on + strand at 217.671 kb on - strand at 217.719 kb on - strand at 217.721 kb on + strand at 217.722 kb on - strand at 217.722 kb on - strand at 217.797 kb on + strand at 217.797 kb on + strand at 217.797 kb on + strand at 217.797 kb on + strand at 217.797 kb on + strand at 217.797 kb on + strand at 217.797 kb on + strand at 217.797 kb on + strand at 217.798 kb on - strand at 217.798 kb on - strand at 217.798 kb on - strand at 217.798 kb on - strand at 217.798 kb on - strand at 217.798 kb on - strand at 217.798 kb on - strand at 217.798 kb on - strand at 217.800 kb on - strand at 217.800 kb on - strand at 217.814 kb on + strand at 217.815 kb on - strand at 217.836 kb on + strand, within DDA3937_RS00950 at 217.836 kb on + strand, within DDA3937_RS00950 at 217.837 kb on - strand, within DDA3937_RS00950 at 217.928 kb on + strand, within DDA3937_RS00950 at 217.928 kb on + strand, within DDA3937_RS00950 at 217.929 kb on - strand, within DDA3937_RS00950 at 217.929 kb on - strand, within DDA3937_RS00950 at 217.929 kb on - strand, within DDA3937_RS00950 at 217.952 kb on + strand, within DDA3937_RS00950 at 218.001 kb on + strand, within DDA3937_RS00950 at 218.013 kb on + strand, within DDA3937_RS00950 at 218.014 kb on - strand, within DDA3937_RS00950 at 218.049 kb on + strand, within DDA3937_RS00950 at 218.231 kb on + strand at 218.231 kb on + strand, within DDA3937_RS00950 at 218.296 kb on - strand, within DDA3937_RS00950 at 218.296 kb on - strand, within DDA3937_RS00950 at 218.296 kb on - strand, within DDA3937_RS00950 at 218.384 kb on + strand, within DDA3937_RS00950 at 218.384 kb on + strand, within DDA3937_RS00950 at 218.384 kb on + strand, within DDA3937_RS00950 at 218.385 kb on - strand, within DDA3937_RS00950 at 218.415 kb on + strand, within DDA3937_RS00950 at 218.415 kb on + strand, within DDA3937_RS00950 at 218.416 kb on - strand, within DDA3937_RS00950 at 218.416 kb on - strand, within DDA3937_RS00950 at 218.416 kb on - strand, within DDA3937_RS00950 at 218.416 kb on - strand, within DDA3937_RS00950 at 218.416 kb on - strand, within DDA3937_RS00950 at 218.453 kb on + strand, within DDA3937_RS00950 at 218.454 kb on - strand, within DDA3937_RS00950 at 218.493 kb on + strand, within DDA3937_RS00950 at 218.493 kb on + strand, within DDA3937_RS00950 at 218.493 kb on + strand, within DDA3937_RS00950 at 218.526 kb on + strand, within DDA3937_RS00950 at 218.526 kb on + strand, within DDA3937_RS00950 at 218.526 kb on + strand, within DDA3937_RS00950 at 218.526 kb on + strand, within DDA3937_RS00950 at 218.526 kb on + strand, within DDA3937_RS00950 at 218.526 kb on + strand, within DDA3937_RS00950 at 218.526 kb on + strand, within DDA3937_RS00950 at 218.526 kb on + strand, within DDA3937_RS00950 at 218.527 kb on - strand, within DDA3937_RS00950 at 218.527 kb on - strand, within DDA3937_RS00950 at 218.527 kb on - strand, within DDA3937_RS00950 at 218.527 kb on - strand, within DDA3937_RS00950 at 218.527 kb on - strand, within DDA3937_RS00950 at 218.527 kb on - strand, within DDA3937_RS00950 at 218.527 kb on - strand, within DDA3937_RS00950 at 218.527 kb on - strand, within DDA3937_RS00950 at 218.527 kb on - strand, within DDA3937_RS00950 at 218.527 kb on - strand, within DDA3937_RS00950 at 218.527 kb on - strand, within DDA3937_RS00950 at 218.859 kb on + strand at 218.860 kb on - strand at 218.860 kb on - strand at 218.874 kb on + strand at 218.874 kb on + strand at 218.968 kb on + strand at 218.978 kb on + strand at 219.088 kb on - strand at 219.160 kb on + strand, within DDA3937_RS00955 at 219.161 kb on - strand, within DDA3937_RS00955 at 219.231 kb on - strand, within DDA3937_RS00955 at 219.231 kb on - strand, within DDA3937_RS00955 at 219.329 kb on - strand, within DDA3937_RS00955 at 219.437 kb on - strand, within DDA3937_RS00955 at 219.445 kb on + strand, within DDA3937_RS00955 at 219.445 kb on + strand, within DDA3937_RS00955 at 219.446 kb on - strand, within DDA3937_RS00955 at 219.500 kb on + strand, within DDA3937_RS00955 at 219.500 kb on + strand, within DDA3937_RS00955 at 219.547 kb on + strand, within DDA3937_RS00955 at 219.547 kb on + strand, within DDA3937_RS00955 at 219.548 kb on - strand, within DDA3937_RS00955 at 219.548 kb on - strand, within DDA3937_RS00955 at 219.548 kb on - strand, within DDA3937_RS00955 at 219.731 kb on + strand, within DDA3937_RS00955 at 219.731 kb on + strand, within DDA3937_RS00955 at 219.731 kb on + strand, within DDA3937_RS00955 at 219.732 kb on - strand, within DDA3937_RS00955 at 219.732 kb on - strand, within DDA3937_RS00955
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 217,200 - -2.1 217,236 + DDA3937_RS00945 0.13 -0.5 217,237 - DDA3937_RS00945 0.13 +0.4 217,237 - DDA3937_RS00945 0.13 -1.8 217,237 - DDA3937_RS00945 0.13 -2.0 217,237 - DDA3937_RS00945 0.13 -0.2 217,237 - DDA3937_RS00945 0.13 +1.1 217,567 - +0.3 217,579 + -0.3 217,580 - +0.6 217,580 - -2.5 217,583 - -0.5 217,584 + +1.8 217,585 - -1.0 217,585 - +0.0 217,670 + -2.5 217,670 + -0.0 217,670 + -1.4 217,671 - -0.8 217,719 - -0.0 217,721 + -1.5 217,722 - +0.3 217,722 - -0.6 217,797 + -0.6 217,797 + -0.6 217,797 + -0.5 217,797 + -1.0 217,797 + -0.1 217,797 + +0.0 217,797 + +0.2 217,797 + -0.7 217,798 - -1.4 217,798 - +0.9 217,798 - -1.9 217,798 - -1.1 217,798 - -2.9 217,798 - -2.7 217,798 - +0.9 217,798 - -1.7 217,800 - -0.5 217,800 - -0.6 217,814 + -1.7 217,815 - -0.5 217,836 + DDA3937_RS00950 0.12 -1.2 217,836 + DDA3937_RS00950 0.12 -0.5 217,837 - DDA3937_RS00950 0.12 -1.5 217,928 + DDA3937_RS00950 0.20 -2.1 217,928 + DDA3937_RS00950 0.20 -0.7 217,929 - DDA3937_RS00950 0.20 -0.6 217,929 - DDA3937_RS00950 0.20 -1.7 217,929 - DDA3937_RS00950 0.20 -1.2 217,952 + DDA3937_RS00950 0.22 -0.3 218,001 + DDA3937_RS00950 0.26 -1.7 218,013 + DDA3937_RS00950 0.27 -1.6 218,014 - DDA3937_RS00950 0.27 +1.0 218,049 + DDA3937_RS00950 0.30 -1.7 218,231 + -0.3 218,231 + DDA3937_RS00950 0.46 -2.0 218,296 - DDA3937_RS00950 0.51 -0.8 218,296 - DDA3937_RS00950 0.51 -1.6 218,296 - DDA3937_RS00950 0.51 -1.5 218,384 + DDA3937_RS00950 0.59 -1.8 218,384 + DDA3937_RS00950 0.59 -2.1 218,384 + DDA3937_RS00950 0.59 +0.3 218,385 - DDA3937_RS00950 0.59 -0.8 218,415 + DDA3937_RS00950 0.61 -1.8 218,415 + DDA3937_RS00950 0.61 +0.7 218,416 - DDA3937_RS00950 0.62 -1.7 218,416 - DDA3937_RS00950 0.62 -1.0 218,416 - DDA3937_RS00950 0.62 -0.1 218,416 - DDA3937_RS00950 0.62 -0.1 218,416 - DDA3937_RS00950 0.62 -0.2 218,453 + DDA3937_RS00950 0.65 -1.5 218,454 - DDA3937_RS00950 0.65 -0.7 218,493 + DDA3937_RS00950 0.68 -0.8 218,493 + DDA3937_RS00950 0.68 -0.7 218,493 + DDA3937_RS00950 0.68 -2.4 218,526 + DDA3937_RS00950 0.71 -3.7 218,526 + DDA3937_RS00950 0.71 -2.3 218,526 + DDA3937_RS00950 0.71 -2.9 218,526 + DDA3937_RS00950 0.71 +0.2 218,526 + DDA3937_RS00950 0.71 +0.3 218,526 + DDA3937_RS00950 0.71 -0.1 218,526 + DDA3937_RS00950 0.71 -2.0 218,526 + DDA3937_RS00950 0.71 +0.6 218,527 - DDA3937_RS00950 0.71 -0.8 218,527 - DDA3937_RS00950 0.71 -0.7 218,527 - DDA3937_RS00950 0.71 -1.9 218,527 - DDA3937_RS00950 0.71 -1.2 218,527 - DDA3937_RS00950 0.71 +0.9 218,527 - DDA3937_RS00950 0.71 -2.4 218,527 - DDA3937_RS00950 0.71 -0.7 218,527 - DDA3937_RS00950 0.71 -1.3 218,527 - DDA3937_RS00950 0.71 +1.0 218,527 - DDA3937_RS00950 0.71 +0.1 218,527 - DDA3937_RS00950 0.71 -2.0 218,859 + +0.1 218,860 - -0.4 218,860 - -1.3 218,874 + -0.9 218,874 + -0.0 218,968 + -1.1 218,978 + -0.9 219,088 - -1.8 219,160 + DDA3937_RS00955 0.12 -0.2 219,161 - DDA3937_RS00955 0.12 +0.5 219,231 - DDA3937_RS00955 0.15 -1.8 219,231 - DDA3937_RS00955 0.15 +0.2 219,329 - DDA3937_RS00955 0.19 -1.0 219,437 - DDA3937_RS00955 0.24 +0.5 219,445 + DDA3937_RS00955 0.24 +0.4 219,445 + DDA3937_RS00955 0.24 -0.3 219,446 - DDA3937_RS00955 0.24 -0.4 219,500 + DDA3937_RS00955 0.26 -0.5 219,500 + DDA3937_RS00955 0.26 -0.6 219,547 + DDA3937_RS00955 0.28 -0.5 219,547 + DDA3937_RS00955 0.28 -0.6 219,548 - DDA3937_RS00955 0.28 -0.8 219,548 - DDA3937_RS00955 0.28 -0.6 219,548 - DDA3937_RS00955 0.28 -3.6 219,731 + DDA3937_RS00955 0.36 -2.9 219,731 + DDA3937_RS00955 0.36 +0.5 219,731 + DDA3937_RS00955 0.36 -0.2 219,732 - DDA3937_RS00955 0.36 -0.8 219,732 - DDA3937_RS00955 0.36 +0.3
Or see this region's nucleotide sequence