Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00590 and DDA3937_RS00595 are separated by 205 nucleotides DDA3937_RS00595 and DDA3937_RS00600 are separated by 55 nucleotides DDA3937_RS00600 and DDA3937_RS00605 are separated by 185 nucleotides
DDA3937_RS00590: DDA3937_RS00590 - inner membrane protein YhjD, at 139,606 to 140,592
_RS00590
DDA3937_RS00595: DDA3937_RS00595 - MFS transporter, at 140,798 to 142,021
_RS00595
DDA3937_RS00600: DDA3937_RS00600 - DcrB family lipoprotein, at 142,077 to 142,640
_RS00600
DDA3937_RS00605: DDA3937_RS00605 - 7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter, at 142,826 to 143,497
_RS00605
Position (kb) 140
141
142
143 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 139.879 kb on + strand, within DDA3937_RS00590 at 139.880 kb on - strand, within DDA3937_RS00590 at 139.880 kb on - strand, within DDA3937_RS00590 at 139.898 kb on + strand, within DDA3937_RS00590 at 139.898 kb on + strand, within DDA3937_RS00590 at 139.898 kb on + strand, within DDA3937_RS00590 at 139.898 kb on + strand, within DDA3937_RS00590 at 139.899 kb on - strand, within DDA3937_RS00590 at 139.899 kb on - strand, within DDA3937_RS00590 at 139.912 kb on - strand, within DDA3937_RS00590 at 140.028 kb on + strand, within DDA3937_RS00590 at 140.087 kb on + strand, within DDA3937_RS00590 at 140.088 kb on - strand, within DDA3937_RS00590 at 140.088 kb on - strand, within DDA3937_RS00590 at 140.220 kb on + strand, within DDA3937_RS00590 at 140.221 kb on - strand, within DDA3937_RS00590 at 140.238 kb on + strand, within DDA3937_RS00590 at 140.239 kb on - strand, within DDA3937_RS00590 at 140.239 kb on - strand, within DDA3937_RS00590 at 140.239 kb on - strand, within DDA3937_RS00590 at 140.242 kb on - strand, within DDA3937_RS00590 at 140.247 kb on + strand, within DDA3937_RS00590 at 140.315 kb on - strand, within DDA3937_RS00590 at 140.363 kb on - strand, within DDA3937_RS00590 at 140.363 kb on - strand, within DDA3937_RS00590 at 140.439 kb on + strand, within DDA3937_RS00590 at 140.509 kb on + strand at 140.509 kb on + strand at 140.509 kb on + strand at 140.510 kb on - strand at 140.510 kb on - strand at 140.510 kb on - strand at 140.510 kb on - strand at 140.510 kb on - strand at 140.514 kb on - strand at 140.625 kb on + strand at 140.625 kb on + strand at 140.625 kb on + strand at 140.625 kb on + strand at 140.626 kb on - strand at 140.626 kb on - strand at 140.626 kb on - strand at 140.627 kb on + strand at 140.628 kb on - strand at 140.647 kb on + strand at 140.647 kb on + strand at 140.647 kb on + strand at 140.647 kb on + strand at 140.648 kb on - strand at 140.648 kb on - strand at 140.648 kb on - strand at 140.649 kb on + strand at 140.649 kb on + strand at 140.649 kb on + strand at 140.649 kb on + strand at 140.650 kb on - strand at 140.650 kb on - strand at 140.650 kb on - strand at 140.650 kb on - strand at 140.650 kb on - strand at 140.650 kb on - strand at 140.650 kb on - strand at 140.650 kb on - strand at 140.650 kb on - strand at 140.650 kb on - strand at 140.651 kb on + strand at 140.651 kb on + strand at 140.651 kb on + strand at 140.651 kb on + strand at 140.651 kb on + strand at 140.651 kb on + strand at 140.651 kb on + strand at 140.651 kb on + strand at 140.652 kb on - strand at 140.652 kb on - strand at 140.652 kb on - strand at 140.657 kb on + strand at 140.658 kb on - strand at 140.728 kb on - strand at 140.824 kb on + strand at 140.881 kb on - strand at 140.890 kb on + strand at 140.903 kb on + strand at 140.903 kb on + strand at 140.942 kb on + strand, within DDA3937_RS00595 at 140.942 kb on + strand at 140.942 kb on + strand, within DDA3937_RS00595 at 140.942 kb on + strand, within DDA3937_RS00595 at 140.942 kb on - strand, within DDA3937_RS00595 at 140.943 kb on - strand, within DDA3937_RS00595 at 140.943 kb on - strand, within DDA3937_RS00595 at 140.943 kb on - strand, within DDA3937_RS00595 at 140.943 kb on - strand, within DDA3937_RS00595 at 140.943 kb on - strand, within DDA3937_RS00595 at 140.943 kb on - strand, within DDA3937_RS00595 at 140.943 kb on - strand, within DDA3937_RS00595 at 140.997 kb on + strand, within DDA3937_RS00595 at 140.997 kb on + strand, within DDA3937_RS00595 at 140.997 kb on + strand, within DDA3937_RS00595 at 140.998 kb on - strand, within DDA3937_RS00595 at 140.998 kb on - strand, within DDA3937_RS00595 at 140.998 kb on - strand, within DDA3937_RS00595 at 140.998 kb on - strand, within DDA3937_RS00595 at 140.998 kb on - strand, within DDA3937_RS00595 at 140.998 kb on - strand, within DDA3937_RS00595 at 140.998 kb on - strand, within DDA3937_RS00595 at 140.998 kb on - strand, within DDA3937_RS00595 at 141.002 kb on + strand, within DDA3937_RS00595 at 141.002 kb on + strand at 141.003 kb on - strand, within DDA3937_RS00595 at 141.011 kb on - strand, within DDA3937_RS00595 at 141.109 kb on - strand, within DDA3937_RS00595 at 141.109 kb on - strand, within DDA3937_RS00595 at 141.114 kb on - strand, within DDA3937_RS00595 at 141.293 kb on + strand, within DDA3937_RS00595 at 141.294 kb on - strand, within DDA3937_RS00595 at 141.335 kb on + strand, within DDA3937_RS00595 at 141.335 kb on + strand, within DDA3937_RS00595 at 141.335 kb on + strand, within DDA3937_RS00595 at 141.336 kb on - strand, within DDA3937_RS00595 at 141.336 kb on - strand, within DDA3937_RS00595 at 141.430 kb on - strand, within DDA3937_RS00595 at 141.463 kb on - strand, within DDA3937_RS00595 at 141.463 kb on - strand, within DDA3937_RS00595 at 141.463 kb on - strand, within DDA3937_RS00595 at 141.463 kb on - strand, within DDA3937_RS00595 at 141.482 kb on + strand, within DDA3937_RS00595 at 141.483 kb on - strand, within DDA3937_RS00595 at 141.535 kb on + strand, within DDA3937_RS00595 at 141.535 kb on + strand, within DDA3937_RS00595 at 141.536 kb on - strand, within DDA3937_RS00595 at 141.536 kb on - strand, within DDA3937_RS00595 at 141.536 kb on - strand, within DDA3937_RS00595 at 141.549 kb on - strand, within DDA3937_RS00595 at 141.848 kb on + strand, within DDA3937_RS00595 at 141.848 kb on + strand, within DDA3937_RS00595 at 141.848 kb on + strand, within DDA3937_RS00595 at 141.849 kb on - strand, within DDA3937_RS00595 at 141.849 kb on - strand, within DDA3937_RS00595 at 141.849 kb on - strand, within DDA3937_RS00595 at 141.849 kb on - strand, within DDA3937_RS00595 at 141.849 kb on - strand, within DDA3937_RS00595 at 141.911 kb on + strand at 141.911 kb on + strand at 141.911 kb on + strand at 141.911 kb on + strand at 141.911 kb on + strand at 141.912 kb on - strand at 141.914 kb on - strand at 141.933 kb on - strand at 141.986 kb on + strand at 141.986 kb on + strand at 141.986 kb on + strand at 141.987 kb on - strand at 142.287 kb on + strand, within DDA3937_RS00600 at 142.412 kb on - strand, within DDA3937_RS00600 at 142.620 kb on - strand at 142.621 kb on + strand at 142.621 kb on + strand at 142.622 kb on - strand at 142.622 kb on - strand at 142.630 kb on - strand at 142.655 kb on + strand at 142.807 kb on + strand at 142.808 kb on - strand at 142.824 kb on + strand at 142.825 kb on - strand at 142.845 kb on + strand at 142.891 kb on + strand at 142.892 kb on - strand at 142.905 kb on + strand, within DDA3937_RS00605 at 142.905 kb on + strand, within DDA3937_RS00605 at 142.950 kb on + strand, within DDA3937_RS00605 at 142.951 kb on - strand, within DDA3937_RS00605 at 143.007 kb on + strand, within DDA3937_RS00605 at 143.007 kb on + strand, within DDA3937_RS00605 at 143.008 kb on - strand, within DDA3937_RS00605 at 143.008 kb on - strand, within DDA3937_RS00605
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 139,879 + DDA3937_RS00590 0.28 -0.2 139,880 - DDA3937_RS00590 0.28 +0.9 139,880 - DDA3937_RS00590 0.28 -0.3 139,898 + DDA3937_RS00590 0.30 -1.0 139,898 + DDA3937_RS00590 0.30 -0.5 139,898 + DDA3937_RS00590 0.30 -2.4 139,898 + DDA3937_RS00590 0.30 -1.7 139,899 - DDA3937_RS00590 0.30 -1.6 139,899 - DDA3937_RS00590 0.30 +0.5 139,912 - DDA3937_RS00590 0.31 -0.0 140,028 + DDA3937_RS00590 0.43 -0.3 140,087 + DDA3937_RS00590 0.49 +0.5 140,088 - DDA3937_RS00590 0.49 +1.5 140,088 - DDA3937_RS00590 0.49 +1.7 140,220 + DDA3937_RS00590 0.62 +1.0 140,221 - DDA3937_RS00590 0.62 -1.9 140,238 + DDA3937_RS00590 0.64 -0.2 140,239 - DDA3937_RS00590 0.64 -0.1 140,239 - DDA3937_RS00590 0.64 +1.6 140,239 - DDA3937_RS00590 0.64 -1.0 140,242 - DDA3937_RS00590 0.64 -0.9 140,247 + DDA3937_RS00590 0.65 +0.1 140,315 - DDA3937_RS00590 0.72 -0.1 140,363 - DDA3937_RS00590 0.77 -0.3 140,363 - DDA3937_RS00590 0.77 -2.0 140,439 + DDA3937_RS00590 0.84 -1.3 140,509 + -1.3 140,509 + +4.3 140,509 + -0.7 140,510 - +0.8 140,510 - -0.8 140,510 - -1.2 140,510 - -2.9 140,510 - +5.1 140,514 - +0.5 140,625 + -0.7 140,625 + -0.1 140,625 + -0.4 140,625 + -0.2 140,626 - +0.5 140,626 - -0.5 140,626 - -2.6 140,627 + -0.9 140,628 - -1.3 140,647 + +0.4 140,647 + -1.4 140,647 + +0.4 140,647 + +0.3 140,648 - -0.0 140,648 - -1.2 140,648 - -0.3 140,649 + -0.4 140,649 + -3.2 140,649 + +0.7 140,649 + -0.7 140,650 - +1.3 140,650 - -0.5 140,650 - +0.3 140,650 - -0.9 140,650 - +2.4 140,650 - -1.9 140,650 - -1.1 140,650 - +0.3 140,650 - -0.3 140,650 - -0.2 140,651 + -0.9 140,651 + +2.2 140,651 + +0.6 140,651 + -1.1 140,651 + -0.1 140,651 + -0.6 140,651 + -1.7 140,651 + -1.5 140,652 - +1.4 140,652 - -0.9 140,652 - -1.9 140,657 + -0.5 140,658 - -0.4 140,728 - -0.3 140,824 + -2.3 140,881 - -0.0 140,890 + +1.0 140,903 + +0.6 140,903 + -0.9 140,942 + DDA3937_RS00595 0.12 -0.5 140,942 + +1.3 140,942 + DDA3937_RS00595 0.12 +0.1 140,942 + DDA3937_RS00595 0.12 -1.0 140,942 - DDA3937_RS00595 0.12 +0.7 140,943 - DDA3937_RS00595 0.12 +0.8 140,943 - DDA3937_RS00595 0.12 +0.4 140,943 - DDA3937_RS00595 0.12 -1.1 140,943 - DDA3937_RS00595 0.12 +0.3 140,943 - DDA3937_RS00595 0.12 +0.7 140,943 - DDA3937_RS00595 0.12 +1.1 140,943 - DDA3937_RS00595 0.12 +0.5 140,997 + DDA3937_RS00595 0.16 -1.3 140,997 + DDA3937_RS00595 0.16 +0.2 140,997 + DDA3937_RS00595 0.16 -0.0 140,998 - DDA3937_RS00595 0.16 -0.3 140,998 - DDA3937_RS00595 0.16 -0.4 140,998 - DDA3937_RS00595 0.16 -0.5 140,998 - DDA3937_RS00595 0.16 -1.1 140,998 - DDA3937_RS00595 0.16 -0.1 140,998 - DDA3937_RS00595 0.16 +0.6 140,998 - DDA3937_RS00595 0.16 +1.0 140,998 - DDA3937_RS00595 0.16 -1.5 141,002 + DDA3937_RS00595 0.17 +0.6 141,002 + -0.0 141,003 - DDA3937_RS00595 0.17 -0.5 141,011 - DDA3937_RS00595 0.17 -0.6 141,109 - DDA3937_RS00595 0.25 -1.5 141,109 - DDA3937_RS00595 0.25 +0.2 141,114 - DDA3937_RS00595 0.26 +1.5 141,293 + DDA3937_RS00595 0.40 -2.0 141,294 - DDA3937_RS00595 0.41 -0.2 141,335 + DDA3937_RS00595 0.44 -0.9 141,335 + DDA3937_RS00595 0.44 +1.0 141,335 + DDA3937_RS00595 0.44 -0.2 141,336 - DDA3937_RS00595 0.44 +0.2 141,336 - DDA3937_RS00595 0.44 -1.7 141,430 - DDA3937_RS00595 0.52 -1.2 141,463 - DDA3937_RS00595 0.54 -1.7 141,463 - DDA3937_RS00595 0.54 +0.7 141,463 - DDA3937_RS00595 0.54 +0.0 141,463 - DDA3937_RS00595 0.54 -0.4 141,482 + DDA3937_RS00595 0.56 +0.2 141,483 - DDA3937_RS00595 0.56 +0.0 141,535 + DDA3937_RS00595 0.60 -0.5 141,535 + DDA3937_RS00595 0.60 -1.0 141,536 - DDA3937_RS00595 0.60 -0.2 141,536 - DDA3937_RS00595 0.60 -0.5 141,536 - DDA3937_RS00595 0.60 -0.4 141,549 - DDA3937_RS00595 0.61 -1.1 141,848 + DDA3937_RS00595 0.86 -0.4 141,848 + DDA3937_RS00595 0.86 +0.1 141,848 + DDA3937_RS00595 0.86 -0.6 141,849 - DDA3937_RS00595 0.86 +1.2 141,849 - DDA3937_RS00595 0.86 +0.4 141,849 - DDA3937_RS00595 0.86 -0.7 141,849 - DDA3937_RS00595 0.86 -0.4 141,849 - DDA3937_RS00595 0.86 +0.6 141,911 + +0.3 141,911 + -1.0 141,911 + +0.9 141,911 + -2.5 141,911 + -1.5 141,912 - -1.3 141,914 - -0.1 141,933 - -1.2 141,986 + -0.5 141,986 + -1.3 141,986 + -0.2 141,987 - +0.9 142,287 + DDA3937_RS00600 0.37 -1.4 142,412 - DDA3937_RS00600 0.59 -1.7 142,620 - -3.3 142,621 + +0.1 142,621 + -2.5 142,622 - -3.8 142,622 - -1.0 142,630 - -3.2 142,655 + -2.0 142,807 + -0.4 142,808 - -1.5 142,824 + -0.9 142,825 - -0.4 142,845 + -0.7 142,891 + +0.6 142,892 - -0.1 142,905 + DDA3937_RS00605 0.12 +1.0 142,905 + DDA3937_RS00605 0.12 +0.9 142,950 + DDA3937_RS00605 0.18 -0.3 142,951 - DDA3937_RS00605 0.19 +0.5 143,007 + DDA3937_RS00605 0.27 -0.1 143,007 + DDA3937_RS00605 0.27 +0.2 143,008 - DDA3937_RS00605 0.27 +2.8 143,008 - DDA3937_RS00605 0.27 +0.7
Or see this region's nucleotide sequence