Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS19380 and DDA3937_RS23450 are separated by 99 nucleotides DDA3937_RS23450 and DDA3937_RS19390 are separated by 710 nucleotides
DDA3937_RS19380: DDA3937_RS19380 - ethanolamine permease, at 4,407,095 to 4,408,462
_RS19380
DDA3937_RS23450: DDA3937_RS23450 - CPBP family intramembrane metalloprotease, at 4,408,562 to 4,408,726
_RS23450
DDA3937_RS19390: DDA3937_RS19390 - oxalate decarboxylase family bicupin, at 4,409,437 to 4,410,687
_RS19390
Position (kb) 4408
4409 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4407.573 kb on + strand, within DDA3937_RS19380 at 4407.573 kb on + strand, within DDA3937_RS19380 at 4407.661 kb on + strand, within DDA3937_RS19380 at 4407.661 kb on + strand, within DDA3937_RS19380 at 4407.760 kb on + strand, within DDA3937_RS19380 at 4407.760 kb on + strand, within DDA3937_RS19380 at 4407.760 kb on + strand, within DDA3937_RS19380 at 4407.760 kb on + strand, within DDA3937_RS19380 at 4407.760 kb on + strand, within DDA3937_RS19380 at 4407.760 kb on + strand, within DDA3937_RS19380 at 4407.760 kb on + strand, within DDA3937_RS19380 at 4407.760 kb on + strand, within DDA3937_RS19380 at 4407.761 kb on - strand, within DDA3937_RS19380 at 4407.761 kb on - strand, within DDA3937_RS19380 at 4407.761 kb on - strand, within DDA3937_RS19380 at 4407.761 kb on - strand, within DDA3937_RS19380 at 4407.761 kb on - strand, within DDA3937_RS19380 at 4407.761 kb on - strand, within DDA3937_RS19380 at 4407.776 kb on + strand, within DDA3937_RS19380 at 4407.776 kb on + strand, within DDA3937_RS19380 at 4407.776 kb on + strand, within DDA3937_RS19380 at 4407.776 kb on + strand, within DDA3937_RS19380 at 4407.777 kb on - strand, within DDA3937_RS19380 at 4407.777 kb on - strand, within DDA3937_RS19380 at 4407.777 kb on - strand, within DDA3937_RS19380 at 4407.900 kb on + strand, within DDA3937_RS19380 at 4407.900 kb on + strand, within DDA3937_RS19380 at 4407.900 kb on + strand, within DDA3937_RS19380 at 4407.901 kb on - strand, within DDA3937_RS19380 at 4407.901 kb on - strand, within DDA3937_RS19380 at 4407.980 kb on - strand, within DDA3937_RS19380 at 4408.050 kb on + strand, within DDA3937_RS19380 at 4408.137 kb on + strand, within DDA3937_RS19380 at 4408.137 kb on + strand, within DDA3937_RS19380 at 4408.138 kb on - strand, within DDA3937_RS19380 at 4408.138 kb on - strand at 4408.199 kb on + strand, within DDA3937_RS19380 at 4408.199 kb on + strand, within DDA3937_RS19380 at 4408.199 kb on + strand, within DDA3937_RS19380 at 4408.199 kb on + strand, within DDA3937_RS19380 at 4408.200 kb on - strand, within DDA3937_RS19380 at 4408.200 kb on - strand, within DDA3937_RS19380 at 4408.210 kb on + strand, within DDA3937_RS19380 at 4408.210 kb on + strand, within DDA3937_RS19380 at 4408.210 kb on + strand, within DDA3937_RS19380 at 4408.211 kb on - strand, within DDA3937_RS19380 at 4408.211 kb on - strand, within DDA3937_RS19380 at 4408.317 kb on + strand, within DDA3937_RS19380 at 4408.317 kb on + strand, within DDA3937_RS19380 at 4408.318 kb on - strand at 4408.318 kb on - strand, within DDA3937_RS19380 at 4408.326 kb on + strand at 4408.326 kb on + strand at 4408.326 kb on + strand at 4408.326 kb on + strand at 4408.327 kb on - strand at 4408.327 kb on - strand at 4408.327 kb on - strand at 4408.330 kb on + strand at 4408.330 kb on + strand at 4408.330 kb on + strand at 4408.330 kb on + strand at 4408.330 kb on + strand at 4408.330 kb on + strand at 4408.330 kb on + strand at 4408.330 kb on + strand at 4408.330 kb on + strand at 4408.330 kb on + strand at 4408.330 kb on + strand at 4408.330 kb on + strand at 4408.330 kb on + strand at 4408.330 kb on + strand at 4408.330 kb on + strand at 4408.330 kb on + strand at 4408.330 kb on + strand at 4408.330 kb on + strand at 4408.331 kb on - strand at 4408.331 kb on - strand at 4408.331 kb on - strand at 4408.331 kb on - strand at 4408.331 kb on - strand at 4408.331 kb on - strand at 4408.331 kb on - strand at 4408.331 kb on - strand at 4408.331 kb on - strand at 4408.331 kb on - strand at 4408.331 kb on - strand at 4408.331 kb on - strand at 4408.331 kb on - strand at 4408.331 kb on - strand at 4408.331 kb on - strand at 4408.331 kb on - strand at 4408.331 kb on - strand at 4408.331 kb on - strand at 4408.331 kb on - strand at 4408.331 kb on - strand at 4408.331 kb on - strand at 4408.331 kb on - strand at 4408.331 kb on - strand at 4408.331 kb on - strand at 4408.331 kb on - strand at 4408.331 kb on - strand at 4408.331 kb on - strand at 4408.331 kb on - strand at 4408.394 kb on + strand at 4408.394 kb on + strand at 4408.518 kb on - strand at 4408.537 kb on + strand at 4408.563 kb on + strand at 4408.563 kb on + strand at 4408.563 kb on + strand at 4408.563 kb on + strand at 4408.563 kb on + strand at 4408.564 kb on - strand at 4408.564 kb on - strand at 4408.564 kb on - strand at 4408.564 kb on - strand at 4408.564 kb on - strand at 4408.564 kb on - strand at 4408.564 kb on - strand at 4408.565 kb on + strand at 4408.565 kb on + strand at 4408.565 kb on + strand at 4408.565 kb on + strand at 4408.588 kb on - strand, within DDA3937_RS23450 at 4408.677 kb on + strand, within DDA3937_RS23450 at 4408.677 kb on + strand, within DDA3937_RS23450 at 4408.678 kb on - strand, within DDA3937_RS23450 at 4408.678 kb on - strand, within DDA3937_RS23450 at 4408.759 kb on + strand at 4408.759 kb on + strand at 4408.760 kb on - strand at 4408.760 kb on - strand at 4408.760 kb on - strand at 4408.790 kb on + strand at 4408.790 kb on + strand at 4408.790 kb on + strand at 4408.791 kb on - strand at 4408.794 kb on - strand at 4408.943 kb on - strand at 4409.063 kb on + strand at 4409.063 kb on + strand at 4409.074 kb on + strand at 4409.074 kb on + strand at 4409.075 kb on - strand at 4409.075 kb on - strand at 4409.075 kb on - strand at 4409.083 kb on - strand at 4409.083 kb on - strand at 4409.108 kb on + strand at 4409.145 kb on + strand at 4409.145 kb on + strand at 4409.178 kb on + strand at 4409.178 kb on + strand at 4409.179 kb on - strand at 4409.179 kb on - strand at 4409.183 kb on - strand at 4409.320 kb on - strand at 4409.330 kb on + strand at 4409.331 kb on - strand at 4409.331 kb on - strand at 4409.336 kb on + strand at 4409.447 kb on + strand at 4409.448 kb on - strand at 4409.463 kb on + strand at 4409.464 kb on - strand at 4409.472 kb on + strand at 4409.664 kb on + strand, within DDA3937_RS19390 at 4409.678 kb on + strand, within DDA3937_RS19390 at 4409.678 kb on + strand, within DDA3937_RS19390 at 4409.679 kb on - strand, within DDA3937_RS19390 at 4409.679 kb on - strand, within DDA3937_RS19390
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 4,407,573 + DDA3937_RS19380 0.35 -0.3 4,407,573 + DDA3937_RS19380 0.35 +2.5 4,407,661 + DDA3937_RS19380 0.41 -0.2 4,407,661 + DDA3937_RS19380 0.41 +0.3 4,407,760 + DDA3937_RS19380 0.49 -0.8 4,407,760 + DDA3937_RS19380 0.49 +1.1 4,407,760 + DDA3937_RS19380 0.49 -0.9 4,407,760 + DDA3937_RS19380 0.49 +0.9 4,407,760 + DDA3937_RS19380 0.49 -2.9 4,407,760 + DDA3937_RS19380 0.49 +0.4 4,407,760 + DDA3937_RS19380 0.49 -1.1 4,407,760 + DDA3937_RS19380 0.49 -0.1 4,407,761 - DDA3937_RS19380 0.49 -1.6 4,407,761 - DDA3937_RS19380 0.49 -0.0 4,407,761 - DDA3937_RS19380 0.49 -0.1 4,407,761 - DDA3937_RS19380 0.49 -0.4 4,407,761 - DDA3937_RS19380 0.49 +0.4 4,407,761 - DDA3937_RS19380 0.49 -1.1 4,407,776 + DDA3937_RS19380 0.50 -0.8 4,407,776 + DDA3937_RS19380 0.50 -0.8 4,407,776 + DDA3937_RS19380 0.50 +2.3 4,407,776 + DDA3937_RS19380 0.50 -0.7 4,407,777 - DDA3937_RS19380 0.50 -0.1 4,407,777 - DDA3937_RS19380 0.50 -0.1 4,407,777 - DDA3937_RS19380 0.50 -2.5 4,407,900 + DDA3937_RS19380 0.59 -2.1 4,407,900 + DDA3937_RS19380 0.59 -0.7 4,407,900 + DDA3937_RS19380 0.59 -0.5 4,407,901 - DDA3937_RS19380 0.59 -0.5 4,407,901 - DDA3937_RS19380 0.59 -0.0 4,407,980 - DDA3937_RS19380 0.65 -2.2 4,408,050 + DDA3937_RS19380 0.70 -0.4 4,408,137 + DDA3937_RS19380 0.76 -0.5 4,408,137 + DDA3937_RS19380 0.76 +0.3 4,408,138 - DDA3937_RS19380 0.76 +0.5 4,408,138 - -0.5 4,408,199 + DDA3937_RS19380 0.81 -0.3 4,408,199 + DDA3937_RS19380 0.81 +2.1 4,408,199 + DDA3937_RS19380 0.81 +1.1 4,408,199 + DDA3937_RS19380 0.81 -0.0 4,408,200 - DDA3937_RS19380 0.81 -0.3 4,408,200 - DDA3937_RS19380 0.81 +1.5 4,408,210 + DDA3937_RS19380 0.82 -1.2 4,408,210 + DDA3937_RS19380 0.82 +0.6 4,408,210 + DDA3937_RS19380 0.82 +0.9 4,408,211 - DDA3937_RS19380 0.82 -1.3 4,408,211 - DDA3937_RS19380 0.82 -0.9 4,408,317 + DDA3937_RS19380 0.89 -0.9 4,408,317 + DDA3937_RS19380 0.89 +1.6 4,408,318 - -0.5 4,408,318 - DDA3937_RS19380 0.89 -0.8 4,408,326 + -0.4 4,408,326 + +0.2 4,408,326 + -1.7 4,408,326 + -0.8 4,408,327 - +2.1 4,408,327 - -1.2 4,408,327 - -0.5 4,408,330 + -0.3 4,408,330 + -1.7 4,408,330 + -0.9 4,408,330 + -2.4 4,408,330 + +0.7 4,408,330 + -0.6 4,408,330 + +0.1 4,408,330 + +0.8 4,408,330 + -0.7 4,408,330 + -0.4 4,408,330 + -0.7 4,408,330 + -0.1 4,408,330 + -1.1 4,408,330 + +0.1 4,408,330 + +0.1 4,408,330 + -1.3 4,408,330 + -0.7 4,408,330 + +2.5 4,408,331 - -0.8 4,408,331 - -1.1 4,408,331 - +0.9 4,408,331 - -0.2 4,408,331 - +0.1 4,408,331 - -1.2 4,408,331 - -1.0 4,408,331 - +0.2 4,408,331 - +0.8 4,408,331 - -0.7 4,408,331 - -2.2 4,408,331 - +0.7 4,408,331 - +1.5 4,408,331 - -1.6 4,408,331 - -0.1 4,408,331 - -1.9 4,408,331 - -1.7 4,408,331 - +0.6 4,408,331 - +1.2 4,408,331 - +0.7 4,408,331 - -1.2 4,408,331 - -1.4 4,408,331 - +0.7 4,408,331 - -0.3 4,408,331 - -1.5 4,408,331 - -0.9 4,408,331 - +0.3 4,408,331 - +0.2 4,408,394 + -0.1 4,408,394 + -1.1 4,408,518 - -0.6 4,408,537 + +0.9 4,408,563 + +0.5 4,408,563 + +1.0 4,408,563 + -1.5 4,408,563 + -0.5 4,408,563 + +1.3 4,408,564 - -0.8 4,408,564 - -1.0 4,408,564 - +0.2 4,408,564 - +1.0 4,408,564 - -0.4 4,408,564 - +0.1 4,408,564 - -0.4 4,408,565 + +3.2 4,408,565 + +1.5 4,408,565 + -0.1 4,408,565 + +0.9 4,408,588 - DDA3937_RS23450 0.16 -0.8 4,408,677 + DDA3937_RS23450 0.70 -0.5 4,408,677 + DDA3937_RS23450 0.70 -0.2 4,408,678 - DDA3937_RS23450 0.70 -0.4 4,408,678 - DDA3937_RS23450 0.70 -1.6 4,408,759 + -1.9 4,408,759 + -0.6 4,408,760 - +1.2 4,408,760 - -1.2 4,408,760 - +1.1 4,408,790 + +1.1 4,408,790 + +0.4 4,408,790 + +0.2 4,408,791 - +0.9 4,408,794 - +0.8 4,408,943 - -0.5 4,409,063 + +1.4 4,409,063 + +0.3 4,409,074 + +0.5 4,409,074 + +0.3 4,409,075 - -1.7 4,409,075 - -0.5 4,409,075 - +0.5 4,409,083 - -0.7 4,409,083 - +0.5 4,409,108 + -0.6 4,409,145 + +0.8 4,409,145 + -0.5 4,409,178 + +0.9 4,409,178 + +1.6 4,409,179 - +0.1 4,409,179 - -0.2 4,409,183 - +0.2 4,409,320 - -1.5 4,409,330 + -0.5 4,409,331 - -0.5 4,409,331 - +0.5 4,409,336 + -0.6 4,409,447 + -1.5 4,409,448 - +0.5 4,409,463 + +0.9 4,409,464 - -0.5 4,409,472 + -0.2 4,409,664 + DDA3937_RS19390 0.18 -0.9 4,409,678 + DDA3937_RS19390 0.19 -0.8 4,409,678 + DDA3937_RS19390 0.19 +0.5 4,409,679 - DDA3937_RS19390 0.19 +0.4 4,409,679 - DDA3937_RS19390 0.19 +0.7
Or see this region's nucleotide sequence