Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS22775

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,008,379	+		DDA3937_RS08890	0.48	-0.4
2,008,379	+		DDA3937_RS08890	0.48	+0.3
2,008,420	+		DDA3937_RS08890	0.59	+1.5
2,008,536	-				-2.2
2,008,551	+				+0.3
2,008,583	+				+0.7
2,008,583	+				+0.3
2,008,584	-				+0.1
2,008,586	+				-1.5
2,008,586	+				-0.2
2,008,587	-				-1.5
2,008,587	-				+1.6
2,008,639	+				-2.8
2,008,639	+				+0.0
2,008,639	+				-1.7
2,008,640	-				-1.1
2,008,640	-				+1.7
2,008,640	-				+0.2
2,008,641	+				+0.1
2,008,677	-		DDA3937_RS08895	0.12	-0.6
2,008,684	+		DDA3937_RS08895	0.13	-1.1
2,008,684	+		DDA3937_RS08895	0.13	+1.4
2,008,693	-		DDA3937_RS08895	0.14	-1.2
2,008,693	-		DDA3937_RS08895	0.14	-0.8
2,008,693	-		DDA3937_RS08895	0.14	-1.7
2,008,710	+				+0.9
2,008,710	+		DDA3937_RS08895	0.17	-0.8
2,008,769	-		DDA3937_RS08895	0.25	-1.9
2,008,817	+		DDA3937_RS08895	0.32	-0.4
2,008,817	+		DDA3937_RS08895	0.32	-1.9
2,008,817	+		DDA3937_RS08895	0.32	-1.3
2,008,818	-		DDA3937_RS08895	0.32	-1.1
2,008,961	+		DDA3937_RS08895	0.52	+0.7
2,009,027	+		DDA3937_RS08895	0.61	-1.1
2,009,027	+		DDA3937_RS08895	0.61	+1.7
2,009,027	+		DDA3937_RS08895	0.61	+0.0
2,009,027	+		DDA3937_RS08895	0.61	-0.3
2,009,027	+		DDA3937_RS08895	0.61	-0.1
2,009,027	+		DDA3937_RS08895	0.61	-0.3
2,009,028	-		DDA3937_RS08895	0.61	+0.9
2,009,028	-		DDA3937_RS08895	0.61	+1.8
2,009,028	-		DDA3937_RS08895	0.61	-0.9
2,009,028	-		DDA3937_RS08895	0.61	+0.3
2,009,028	-		DDA3937_RS08895	0.61	-0.1
2,009,272	+				-1.2
2,009,300	+				+0.1
2,009,300	+				-2.2
2,009,425	+				+0.4
2,009,426	-				+0.5
2,009,426	-				-1.9
2,009,426	-				-1.4
2,009,679	-		DDA3937_RS22775	0.31	-0.7
2,009,679	-		DDA3937_RS22775	0.31	-1.0
2,009,740	-		DDA3937_RS22775	0.36	+1.3
2,009,757	+		DDA3937_RS22775	0.38	-1.1
2,009,757	+		DDA3937_RS22775	0.38	-0.7
2,009,757	+		DDA3937_RS22775	0.38	+0.6
2,009,758	-		DDA3937_RS22775	0.38	+0.3
2,009,758	-				+1.9
2,009,758	-		DDA3937_RS22775	0.38	-1.1
2,009,758	-		DDA3937_RS22775	0.38	-2.1
2,009,758	-		DDA3937_RS22775	0.38	+0.4
2,009,847	-		DDA3937_RS22775	0.45	-1.5
2,009,847	-		DDA3937_RS22775	0.45	-1.1
2,009,873	-		DDA3937_RS22775	0.48	+0.4
2,009,900	+		DDA3937_RS22775	0.50	-0.4
2,009,900	+		DDA3937_RS22775	0.50	-1.2
2,009,900	+		DDA3937_RS22775	0.50	-0.9
2,009,901	-		DDA3937_RS22775	0.50	-1.1
2,009,901	-		DDA3937_RS22775	0.50	-0.1
2,009,901	-		DDA3937_RS22775	0.50	-0.6
2,009,901	-		DDA3937_RS22775	0.50	+0.9
2,009,901	-		DDA3937_RS22775	0.50	-0.6
2,009,901	-		DDA3937_RS22775	0.50	-1.1
2,009,964	+		DDA3937_RS22775	0.55	-0.2
2,009,964	+		DDA3937_RS22775	0.55	+0.2
2,009,965	-		DDA3937_RS22775	0.55	-1.0
2,009,965	-		DDA3937_RS22775	0.55	-0.6
2,009,965	-		DDA3937_RS22775	0.55	-0.8
2,009,968	+		DDA3937_RS22775	0.56	-1.6
2,009,968	+		DDA3937_RS22775	0.56	-0.3
2,009,968	+		DDA3937_RS22775	0.56	-0.3
2,009,968	+		DDA3937_RS22775	0.56	-1.5
2,009,968	+		DDA3937_RS22775	0.56	-2.1
2,009,968	+		DDA3937_RS22775	0.56	+3.1
2,009,968	+		DDA3937_RS22775	0.56	-0.6
2,009,969	-		DDA3937_RS22775	0.56	-1.4
2,009,969	-		DDA3937_RS22775	0.56	-0.4
2,009,969	-				-0.6
2,009,969	-				+1.7
2,009,969	-		DDA3937_RS22775	0.56	+0.0
2,009,969	-		DDA3937_RS22775	0.56	-1.3
2,009,969	-		DDA3937_RS22775	0.56	-0.6
2,009,969	-		DDA3937_RS22775	0.56	-0.6
2,010,227	+		DDA3937_RS22775	0.78	-0.6
2,010,339	+		DDA3937_RS22775	0.87	+1.0
2,010,340	-		DDA3937_RS22775	0.87	-0.4
2,010,340	-		DDA3937_RS22775	0.87	-1.0
2,010,342	-		DDA3937_RS22775	0.87	-1.6
2,010,342	-		DDA3937_RS22775	0.87	-0.5
2,010,413	-				+0.1
2,010,478	+				-0.1
2,010,478	+				-0.1
2,010,478	+				+1.4
2,010,479	-				-0.5
2,010,499	+				+0.7
2,010,499	+				+0.2
2,010,500	-				+0.4
2,010,500	-				-0.2
2,010,578	+				+0.3
2,010,579	-				+0.7
2,010,636	+		DDA3937_RS08905	0.11	-2.6
2,010,636	+		DDA3937_RS08905	0.11	+0.2
2,010,637	-		DDA3937_RS08905	0.11	-0.2
2,010,637	-		DDA3937_RS08905	0.11	-2.1
2,010,637	-		DDA3937_RS08905	0.11	-1.3
2,010,637	-		DDA3937_RS08905	0.11	-1.6
2,010,637	-		DDA3937_RS08905	0.11	-0.1
2,010,637	-		DDA3937_RS08905	0.11	-0.6
2,010,637	-		DDA3937_RS08905	0.11	+1.2
2,010,639	+		DDA3937_RS08905	0.11	-0.3
2,010,737	-		DDA3937_RS08905	0.18	+0.7
2,010,847	+		DDA3937_RS08905	0.25	-0.9
2,010,847	+		DDA3937_RS08905	0.25	-0.5
2,010,847	+		DDA3937_RS08905	0.25	-0.3
2,010,848	-		DDA3937_RS08905	0.25	-1.1
2,010,848	-		DDA3937_RS08905	0.25	-1.4
2,010,917	+		DDA3937_RS08905	0.30	-0.5
2,010,917	+		DDA3937_RS08905	0.30	+0.3
2,010,939	+		DDA3937_RS08905	0.32	-2.3
2,010,939	+		DDA3937_RS08905	0.32	-1.6
2,010,940	-		DDA3937_RS08905	0.32	+1.1
2,011,020	+		DDA3937_RS08905	0.37	+0.4
2,011,030	-		DDA3937_RS08905	0.38	-3.3
2,011,039	+		DDA3937_RS08905	0.39	+0.3
2,011,039	+		DDA3937_RS08905	0.39	-0.1
2,011,039	+		DDA3937_RS08905	0.39	-1.2
2,011,039	+		DDA3937_RS08905	0.39	-1.1
2,011,039	+		DDA3937_RS08905	0.39	-0.4
2,011,040	-		DDA3937_RS08905	0.39	-0.3
2,011,040	-		DDA3937_RS08905	0.39	+0.4
2,011,042	+		DDA3937_RS08905	0.39	-0.2
2,011,042	+		DDA3937_RS08905	0.39	-0.1
2,011,043	-		DDA3937_RS08905	0.39	+0.9
2,011,182	+		DDA3937_RS08905	0.48	+0.1
2,011,182	+		DDA3937_RS08905	0.48	-1.2
2,011,183	-		DDA3937_RS08905	0.48	+0.4
2,011,183	-		DDA3937_RS08905	0.48	-0.1
2,011,184	+		DDA3937_RS08905	0.49	+0.2
2,011,184	+		DDA3937_RS08905	0.49	+0.5
2,011,185	-		DDA3937_RS08905	0.49	-0.7
2,011,185	-		DDA3937_RS08905	0.49	+0.7
2,011,185	-		DDA3937_RS08905	0.49	+0.6
2,011,185	-		DDA3937_RS08905	0.49	-1.1
2,011,200	-		DDA3937_RS08905	0.50	-0.1
2,011,200	-		DDA3937_RS08905	0.50	+0.6
2,011,307	+		DDA3937_RS08905	0.57	-0.6
2,011,307	+		DDA3937_RS08905	0.57	-0.5
2,011,307	+		DDA3937_RS08905	0.57	-0.8
2,011,307	+		DDA3937_RS08905	0.57	-0.9
2,011,308	-		DDA3937_RS08905	0.57	+0.3
2,011,369	+		DDA3937_RS08905	0.61	+0.7
2,011,370	-		DDA3937_RS08905	0.61	-1.6
2,011,370	-		DDA3937_RS08905	0.61	+0.2
2,011,408	+		DDA3937_RS08905	0.64	+0.7
2,011,409	-		DDA3937_RS08905	0.64	-0.0
2,011,409	-		DDA3937_RS08905	0.64	-1.4
2,011,491	+		DDA3937_RS08905	0.70	+0.2
2,011,491	+		DDA3937_RS08905	0.70	+0.2
2,011,491	+		DDA3937_RS08905	0.70	-0.2