Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS21390

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,869,820	+				-0.0
4,869,820	+				+0.5
4,869,821	-				-1.3
4,869,821	-				-1.7
4,869,821	-				-1.0
4,869,821	-				-0.5
4,869,821	-				+1.4
4,869,821	-				+0.5
4,869,830	-				+0.6
4,869,830	-				-0.5
4,869,834	+				-2.2
4,869,861	+				-0.4
4,869,861	+				-0.1
4,869,861	+				+1.3
4,869,861	+				-1.3
4,869,861	+				-0.5
4,869,862	-				-0.2
4,869,862	-				-0.3
4,869,862	-				+0.3
4,869,874	+		DDA3937_RS21385	0.10	-1.0
4,869,874	+		DDA3937_RS21385	0.10	-0.8
4,869,874	+		DDA3937_RS21385	0.10	+1.0
4,869,874	+		DDA3937_RS21385	0.10	+0.5
4,869,875	-		DDA3937_RS21385	0.10	-1.0
4,869,876	+		DDA3937_RS21385	0.10	-0.9
4,869,877	-		DDA3937_RS21385	0.11	+0.7
4,869,877	-		DDA3937_RS21385	0.11	-0.5
4,869,877	-		DDA3937_RS21385	0.11	-0.8
4,869,877	-		DDA3937_RS21385	0.11	-1.6
4,869,877	-		DDA3937_RS21385	0.11	-0.2
4,869,877	-		DDA3937_RS21385	0.11	-1.0
4,869,887	+		DDA3937_RS21385	0.12	+0.2
4,869,888	-		DDA3937_RS21385	0.12	+1.5
4,869,896	-		DDA3937_RS21385	0.12	-0.5
4,869,917	-		DDA3937_RS21385	0.15	-1.7
4,870,040	+		DDA3937_RS21385	0.27	-0.2
4,870,093	-		DDA3937_RS21385	0.33	+0.4
4,870,093	-		DDA3937_RS21385	0.33	-1.6
4,870,093	-		DDA3937_RS21385	0.33	+0.5
4,870,122	+		DDA3937_RS21385	0.35	-0.0
4,870,122	+		DDA3937_RS21385	0.35	-0.4
4,870,123	-		DDA3937_RS21385	0.36	-0.2
4,870,162	+		DDA3937_RS21385	0.40	-0.1
4,870,163	-		DDA3937_RS21385	0.40	+4.8
4,870,163	-		DDA3937_RS21385	0.40	-0.2
4,870,249	+		DDA3937_RS21385	0.48	-0.3
4,870,249	+		DDA3937_RS21385	0.48	-0.3
4,870,249	+		DDA3937_RS21385	0.48	-0.2
4,870,250	-		DDA3937_RS21385	0.48	-0.2
4,870,250	-		DDA3937_RS21385	0.48	+1.9
4,870,250	-		DDA3937_RS21385	0.48	+0.1
4,870,261	-		DDA3937_RS21385	0.50	+1.1
4,870,273	+		DDA3937_RS21385	0.51	+0.6
4,870,273	+		DDA3937_RS21385	0.51	+0.4
4,870,274	-				-0.0
4,870,281	+		DDA3937_RS21385	0.52	-2.0
4,870,345	+		DDA3937_RS21385	0.58	+2.5
4,870,345	+		DDA3937_RS21385	0.58	-0.5
4,870,395	+		DDA3937_RS21385	0.63	+1.2
4,870,396	-		DDA3937_RS21385	0.63	-0.4
4,870,524	+		DDA3937_RS21385	0.76	-0.2
4,870,524	+		DDA3937_RS21385	0.76	-0.0
4,870,524	+		DDA3937_RS21385	0.76	+1.2
4,870,525	-		DDA3937_RS21385	0.76	-0.9
4,870,528	+		DDA3937_RS21385	0.77	-0.9
4,870,528	+		DDA3937_RS21385	0.77	-2.7
4,870,528	+		DDA3937_RS21385	0.77	-0.5
4,870,528	+		DDA3937_RS21385	0.77	+0.0
4,870,529	-		DDA3937_RS21385	0.77	-0.9
4,870,529	-		DDA3937_RS21385	0.77	-0.4
4,870,670	-				-0.2
4,870,732	+				-0.0
4,870,732	+				-0.9
4,870,793	-				-0.6
4,870,793	-				+0.4
4,870,834	+				-0.9
4,870,835	-				+0.1
4,870,846	-				-1.8
4,870,902	-		DDA3937_RS21390	0.13	-0.0
4,870,904	+		DDA3937_RS21390	0.13	+0.6
4,870,904	+		DDA3937_RS21390	0.13	-0.7
4,870,904	+		DDA3937_RS21390	0.13	-1.2
4,870,905	-		DDA3937_RS21390	0.13	+0.2
4,870,905	-		DDA3937_RS21390	0.13	+0.3
4,871,099	+		DDA3937_RS21390	0.30	+1.2
4,871,414	+		DDA3937_RS21390	0.58	+0.4
4,871,414	+		DDA3937_RS21390	0.58	-0.0
4,871,415	-		DDA3937_RS21390	0.58	-1.0
4,871,415	-		DDA3937_RS21390	0.58	+0.6
4,871,415	-		DDA3937_RS21390	0.58	+0.2
4,871,415	-		DDA3937_RS21390	0.58	+0.5
4,871,415	-		DDA3937_RS21390	0.58	-2.3
4,871,511	-		DDA3937_RS21390	0.66	+0.8
4,871,511	-		DDA3937_RS21390	0.66	-1.5
4,871,544	+		DDA3937_RS21390	0.69	+0.8
4,871,544	+		DDA3937_RS21390	0.69	-0.6
4,871,863	+				-0.0
4,871,884	+				+0.4
4,871,920	-				+3.6
4,871,932	-				-0.8
4,871,948	-				-2.0
4,871,955	+				-0.3
4,871,956	-				-0.0
4,871,957	+				+3.5
4,871,966	+				+0.4
4,871,966	+				+1.2
4,871,966	+				-0.8
4,871,967	-				-0.6
4,871,967	-				-0.7
4,871,967	-				+0.2
4,871,967	-				-1.0
4,872,084	+				-1.0
4,872,084	+				+0.5
4,872,085	-				+0.3
4,872,085	-				+0.1
4,872,085	-				-0.9
4,872,085	-				-0.8
4,872,092	+				-0.5
4,872,092	+				-0.8
4,872,092	+				+0.3
4,872,092	+				+1.0
4,872,092	+				-0.7
4,872,092	+				+1.7
4,872,092	+				+0.5
4,872,092	+				-0.0
4,872,092	+				-0.2
4,872,093	-				-0.5
4,872,093	-				+0.1
4,872,093	-				-0.2
4,872,093	-				+0.3
4,872,093	-				-0.3
4,872,093	-				-1.3
4,872,093	-				-0.8
4,872,148	+				-1.0
4,872,148	+				+0.1
4,872,148	+				-1.5
4,872,149	-				-0.1
4,872,149	-				-1.8
4,872,149	-				-0.0
4,872,150	+				+1.0
4,872,150	+				-1.0
4,872,151	-				+0.5
4,872,151	-				+0.1
4,872,151	-				+3.7
4,872,151	-				+0.5
4,872,152	+				-1.9
4,872,152	+				+1.4
4,872,152	+				+1.0
4,872,152	+				-1.3
4,872,152	+				-0.5
4,872,152	+				-1.0
4,872,152	+				+0.3
4,872,153	-				-0.4
4,872,153	-				+0.6
4,872,153	-				+0.3
4,872,153	-				-1.3
4,872,153	-				-3.4
4,872,153	-				-1.1
4,872,153	-				-0.3
4,872,153	-				-0.1
4,872,153	-				+0.3
4,872,153	-				+0.1
4,872,153	-				+0.4
4,872,163	-				+0.8
4,872,204	+				-1.2
4,872,204	+				-1.8
4,872,204	+				+0.5
4,872,204	+				-2.0
4,872,204	+				-0.8
4,872,205	-				-0.5
4,872,205	-				-0.3
4,872,205	-				+3.6
4,872,205	-				-1.4
4,872,205	-				-1.9
4,872,226	+				+0.2
4,872,226	+				-0.5
4,872,227	-				+0.4
4,872,243	-				+0.9
4,872,247	-				+1.1
4,872,247	-				+0.7
4,872,258	+				+0.8
4,872,259	-				-0.2
4,872,259	-				-0.2
4,872,267	+				-0.0
4,872,267	+				+0.5
4,872,267	+				+1.9
4,872,267	+				-1.2
4,872,268	-				-3.8
4,872,270	+				-0.0
4,872,270	+				-0.5
4,872,270	+				-0.5
4,872,271	-				+1.7
4,872,271	-				-1.7
4,872,271	-				+0.0
4,872,271	-				-0.5
4,872,271	-				-0.5
4,872,271	-				+1.0
4,872,271	-				+1.3
4,872,282	+				-2.0
4,872,282	+				-0.5
4,872,283	-				-2.5
4,872,283	-				-0.0
4,872,283	-				+1.0
4,872,283	-				-0.6
4,872,296	+				+1.3
4,872,297	-				-0.6
4,872,297	-				+0.4
4,872,297	-				+0.1
4,872,315	+				+2.9
4,872,315	+				-0.3
4,872,329	+				+2.5
4,872,337	+				-0.0
4,872,337	+				-2.4
4,872,340	+				-0.9
4,872,355	+				-0.2
4,872,356	-				-0.8
4,872,383	-				+0.5
4,872,383	-				-0.9
4,872,383	-				+1.6
4,872,390	+				-1.3
4,872,390	+				-0.7
4,872,391	-				+0.4
4,872,391	-				-0.8
4,872,391	-				+1.0
4,872,391	-				-0.7
4,872,397	-				+0.1
4,872,454	-				-0.0
4,872,455	+				-1.3
4,872,455	+				+0.4
4,872,456	-				-0.3
4,872,457	+				-0.4
4,872,458	-				+0.3
4,872,525	-				+0.1
4,872,573	+				+0.4
4,872,590	+				-0.8
4,872,590	+				-0.8
4,872,590	+				-0.3
4,872,591	-				-1.5
4,872,591	-				-0.1
4,872,591	-				+0.7
4,872,625	+				-0.8
4,872,626	-				+0.1
4,872,672	-				+0.8
4,872,672	-				+0.8
4,872,701	+				+1.7
4,872,701	+				-2.0
4,872,702	-				-0.5
4,872,764	-				+0.4
4,872,769	+				+0.5
4,872,829	+				-1.4
4,872,829	+				-0.0
4,872,829	+				-1.7
4,872,830	-				-1.0
4,872,834	+				-1.0
4,872,838	+				+2.0
4,872,838	+				-0.6
4,872,838	+				+0.6
4,872,838	+				+0.9
4,872,839	-				-0.9
4,872,839	-				+1.0
4,872,839	-				-0.4
4,872,839	-				+0.9
4,872,839	-				-0.4
4,872,843	-				+0.7
4,872,856	+				-0.4
4,872,877	+				-0.8
4,872,877	+				+0.4
4,872,878	-				-0.0
4,872,878	-				+2.2
4,872,878	-				-0.4