Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS20805 and DDA3937_RS20810 overlap by 13 nucleotides DDA3937_RS20810 and DDA3937_RS20815 overlap by 44 nucleotides DDA3937_RS20815 and DDA3937_RS20820 overlap by 8 nucleotides
DDA3937_RS20805: DDA3937_RS20805 - DUF2807 domain-containing protein, at 4,727,259 to 4,727,900
_RS20805
DDA3937_RS20810: DDA3937_RS20810 - 4'-phosphopantetheinyl transferase superfamily protein, at 4,727,888 to 4,728,658
_RS20810
DDA3937_RS20815: DDA3937_RS20815 - two-component system sensor histidine kinase VfmI, at 4,728,615 to 4,729,934
_RS20815
DDA3937_RS20820: DDA3937_RS20820 - two-component system response regulator VfmH, at 4,729,927 to 4,731,327
_RS20820
Position (kb) 4728
4729
4730 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 4727.672 kb on + strand, within DDA3937_RS20805 at 4727.672 kb on + strand, within DDA3937_RS20805 at 4727.672 kb on + strand, within DDA3937_RS20805 at 4727.774 kb on - strand, within DDA3937_RS20805 at 4727.855 kb on + strand at 4727.881 kb on + strand at 4727.881 kb on + strand at 4727.881 kb on + strand at 4727.882 kb on - strand at 4727.936 kb on + strand at 4727.937 kb on - strand at 4727.937 kb on - strand at 4727.937 kb on - strand at 4727.937 kb on - strand at 4727.971 kb on + strand, within DDA3937_RS20810 at 4727.971 kb on + strand, within DDA3937_RS20810 at 4727.972 kb on - strand, within DDA3937_RS20810 at 4727.988 kb on + strand, within DDA3937_RS20810 at 4727.988 kb on + strand, within DDA3937_RS20810 at 4727.988 kb on + strand, within DDA3937_RS20810 at 4727.989 kb on - strand, within DDA3937_RS20810 at 4728.074 kb on - strand, within DDA3937_RS20810 at 4728.147 kb on + strand, within DDA3937_RS20810 at 4728.147 kb on + strand, within DDA3937_RS20810 at 4728.148 kb on - strand, within DDA3937_RS20810 at 4728.148 kb on - strand, within DDA3937_RS20810 at 4728.148 kb on - strand, within DDA3937_RS20810 at 4728.148 kb on - strand, within DDA3937_RS20810 at 4728.148 kb on - strand, within DDA3937_RS20810 at 4728.148 kb on - strand, within DDA3937_RS20810 at 4728.263 kb on - strand, within DDA3937_RS20810 at 4728.340 kb on + strand, within DDA3937_RS20810 at 4728.340 kb on + strand, within DDA3937_RS20810 at 4728.341 kb on - strand, within DDA3937_RS20810 at 4728.353 kb on + strand, within DDA3937_RS20810 at 4728.353 kb on + strand, within DDA3937_RS20810 at 4728.419 kb on + strand, within DDA3937_RS20810 at 4728.575 kb on + strand, within DDA3937_RS20810 at 4728.575 kb on + strand, within DDA3937_RS20810 at 4728.576 kb on - strand, within DDA3937_RS20810 at 4728.576 kb on - strand, within DDA3937_RS20810 at 4728.576 kb on - strand, within DDA3937_RS20810 at 4728.576 kb on - strand, within DDA3937_RS20810 at 4728.592 kb on - strand at 4728.592 kb on - strand at 4728.635 kb on + strand at 4728.635 kb on + strand at 4728.636 kb on - strand at 4728.636 kb on - strand at 4728.754 kb on + strand, within DDA3937_RS20815 at 4728.754 kb on + strand, within DDA3937_RS20815 at 4728.755 kb on - strand, within DDA3937_RS20815 at 4728.755 kb on - strand, within DDA3937_RS20815 at 4728.815 kb on + strand, within DDA3937_RS20815 at 4728.974 kb on + strand, within DDA3937_RS20815 at 4728.974 kb on + strand, within DDA3937_RS20815 at 4728.974 kb on + strand, within DDA3937_RS20815 at 4729.067 kb on - strand, within DDA3937_RS20815 at 4729.154 kb on + strand, within DDA3937_RS20815 at 4729.154 kb on + strand, within DDA3937_RS20815 at 4729.302 kb on + strand, within DDA3937_RS20815 at 4729.302 kb on + strand, within DDA3937_RS20815 at 4729.303 kb on - strand, within DDA3937_RS20815 at 4729.303 kb on - strand, within DDA3937_RS20815 at 4729.303 kb on - strand, within DDA3937_RS20815 at 4729.500 kb on - strand, within DDA3937_RS20815 at 4729.500 kb on - strand, within DDA3937_RS20815 at 4729.544 kb on + strand, within DDA3937_RS20815 at 4729.545 kb on - strand, within DDA3937_RS20815 at 4729.550 kb on + strand, within DDA3937_RS20815 at 4729.550 kb on + strand, within DDA3937_RS20815 at 4729.551 kb on - strand, within DDA3937_RS20815 at 4729.560 kb on + strand, within DDA3937_RS20815 at 4729.561 kb on - strand, within DDA3937_RS20815 at 4729.561 kb on - strand, within DDA3937_RS20815 at 4729.576 kb on + strand, within DDA3937_RS20815 at 4729.576 kb on + strand, within DDA3937_RS20815 at 4729.576 kb on + strand, within DDA3937_RS20815 at 4729.576 kb on + strand, within DDA3937_RS20815 at 4729.576 kb on + strand, within DDA3937_RS20815 at 4729.576 kb on + strand, within DDA3937_RS20815 at 4729.576 kb on + strand, within DDA3937_RS20815 at 4729.576 kb on + strand, within DDA3937_RS20815 at 4729.576 kb on + strand, within DDA3937_RS20815 at 4729.576 kb on + strand, within DDA3937_RS20815 at 4729.576 kb on + strand, within DDA3937_RS20815 at 4729.576 kb on + strand, within DDA3937_RS20815 at 4729.576 kb on + strand, within DDA3937_RS20815 at 4729.576 kb on + strand, within DDA3937_RS20815 at 4729.577 kb on - strand, within DDA3937_RS20815 at 4729.577 kb on - strand, within DDA3937_RS20815 at 4729.577 kb on - strand, within DDA3937_RS20815 at 4729.577 kb on - strand, within DDA3937_RS20815 at 4729.577 kb on - strand, within DDA3937_RS20815 at 4729.577 kb on - strand, within DDA3937_RS20815 at 4729.577 kb on - strand, within DDA3937_RS20815 at 4729.577 kb on - strand, within DDA3937_RS20815 at 4729.577 kb on - strand, within DDA3937_RS20815 at 4729.577 kb on - strand, within DDA3937_RS20815 at 4729.577 kb on - strand, within DDA3937_RS20815 at 4729.577 kb on - strand, within DDA3937_RS20815 at 4729.577 kb on - strand, within DDA3937_RS20815 at 4729.577 kb on - strand, within DDA3937_RS20815 at 4729.577 kb on - strand, within DDA3937_RS20815 at 4729.577 kb on - strand at 4729.577 kb on - strand, within DDA3937_RS20815 at 4729.577 kb on - strand, within DDA3937_RS20815 at 4729.577 kb on - strand, within DDA3937_RS20815 at 4729.577 kb on - strand, within DDA3937_RS20815 at 4729.577 kb on - strand, within DDA3937_RS20815 at 4729.577 kb on - strand, within DDA3937_RS20815 at 4729.577 kb on - strand, within DDA3937_RS20815 at 4729.579 kb on + strand, within DDA3937_RS20815 at 4729.579 kb on + strand, within DDA3937_RS20815 at 4729.579 kb on + strand, within DDA3937_RS20815 at 4729.579 kb on + strand, within DDA3937_RS20815 at 4729.579 kb on + strand, within DDA3937_RS20815 at 4729.579 kb on + strand, within DDA3937_RS20815 at 4729.579 kb on + strand, within DDA3937_RS20815 at 4729.579 kb on + strand, within DDA3937_RS20815 at 4729.579 kb on + strand, within DDA3937_RS20815 at 4729.580 kb on - strand, within DDA3937_RS20815 at 4729.580 kb on - strand, within DDA3937_RS20815 at 4729.580 kb on - strand, within DDA3937_RS20815 at 4729.580 kb on - strand, within DDA3937_RS20815 at 4729.580 kb on - strand, within DDA3937_RS20815 at 4729.580 kb on - strand, within DDA3937_RS20815 at 4729.580 kb on - strand, within DDA3937_RS20815 at 4729.580 kb on - strand, within DDA3937_RS20815 at 4729.580 kb on - strand, within DDA3937_RS20815 at 4729.580 kb on - strand, within DDA3937_RS20815 at 4729.580 kb on - strand, within DDA3937_RS20815 at 4729.580 kb on - strand, within DDA3937_RS20815 at 4729.665 kb on - strand, within DDA3937_RS20815 at 4729.665 kb on - strand, within DDA3937_RS20815 at 4729.665 kb on - strand, within DDA3937_RS20815 at 4729.763 kb on + strand, within DDA3937_RS20815 at 4729.763 kb on + strand, within DDA3937_RS20815 at 4729.763 kb on + strand, within DDA3937_RS20815 at 4729.764 kb on - strand, within DDA3937_RS20815 at 4729.764 kb on - strand, within DDA3937_RS20815 at 4729.764 kb on - strand, within DDA3937_RS20815 at 4729.764 kb on - strand, within DDA3937_RS20815 at 4729.764 kb on - strand, within DDA3937_RS20815 at 4729.775 kb on - strand, within DDA3937_RS20815 at 4729.819 kb on + strand at 4729.820 kb on - strand at 4729.846 kb on - strand at 4729.846 kb on - strand at 4729.846 kb on - strand at 4729.846 kb on - strand at 4729.846 kb on - strand at 4729.855 kb on + strand at 4729.856 kb on - strand at 4729.928 kb on + strand at 4729.929 kb on - strand at 4729.929 kb on - strand at 4729.938 kb on + strand at 4730.032 kb on - strand at 4730.229 kb on - strand, within DDA3937_RS20820 at 4730.229 kb on - strand, within DDA3937_RS20820 at 4730.259 kb on + strand, within DDA3937_RS20820 at 4730.259 kb on + strand, within DDA3937_RS20820 at 4730.277 kb on + strand, within DDA3937_RS20820 at 4730.278 kb on - strand, within DDA3937_RS20820 at 4730.282 kb on + strand, within DDA3937_RS20820 at 4730.283 kb on - strand, within DDA3937_RS20820 at 4730.362 kb on + strand, within DDA3937_RS20820 at 4730.373 kb on + strand, within DDA3937_RS20820 at 4730.374 kb on - strand, within DDA3937_RS20820 at 4730.387 kb on + strand, within DDA3937_RS20820 at 4730.387 kb on + strand, within DDA3937_RS20820 at 4730.451 kb on + strand, within DDA3937_RS20820 at 4730.452 kb on - strand, within DDA3937_RS20820 at 4730.455 kb on - strand, within DDA3937_RS20820 at 4730.517 kb on + strand, within DDA3937_RS20820 at 4730.517 kb on + strand, within DDA3937_RS20820 at 4730.517 kb on + strand, within DDA3937_RS20820
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 4,727,672 + DDA3937_RS20805 0.64 +0.0 4,727,672 + DDA3937_RS20805 0.64 -3.0 4,727,672 + DDA3937_RS20805 0.64 -0.5 4,727,774 - DDA3937_RS20805 0.80 -0.4 4,727,855 + -1.3 4,727,881 + -1.2 4,727,881 + +1.8 4,727,881 + -0.4 4,727,882 - -0.0 4,727,936 + +0.2 4,727,937 - -0.7 4,727,937 - -0.3 4,727,937 - +0.2 4,727,937 - +2.1 4,727,971 + DDA3937_RS20810 0.11 +1.0 4,727,971 + DDA3937_RS20810 0.11 -1.3 4,727,972 - DDA3937_RS20810 0.11 -0.7 4,727,988 + DDA3937_RS20810 0.13 -0.6 4,727,988 + DDA3937_RS20810 0.13 -0.3 4,727,988 + DDA3937_RS20810 0.13 -1.9 4,727,989 - DDA3937_RS20810 0.13 -0.6 4,728,074 - DDA3937_RS20810 0.24 -1.9 4,728,147 + DDA3937_RS20810 0.34 -0.1 4,728,147 + DDA3937_RS20810 0.34 -0.6 4,728,148 - DDA3937_RS20810 0.34 -0.6 4,728,148 - DDA3937_RS20810 0.34 -0.1 4,728,148 - DDA3937_RS20810 0.34 +1.1 4,728,148 - DDA3937_RS20810 0.34 -0.9 4,728,148 - DDA3937_RS20810 0.34 +2.5 4,728,148 - DDA3937_RS20810 0.34 +0.6 4,728,263 - DDA3937_RS20810 0.49 +0.6 4,728,340 + DDA3937_RS20810 0.59 +1.1 4,728,340 + DDA3937_RS20810 0.59 -0.5 4,728,341 - DDA3937_RS20810 0.59 -0.0 4,728,353 + DDA3937_RS20810 0.60 -0.9 4,728,353 + DDA3937_RS20810 0.60 -1.5 4,728,419 + DDA3937_RS20810 0.69 +0.5 4,728,575 + DDA3937_RS20810 0.89 +0.1 4,728,575 + DDA3937_RS20810 0.89 -1.6 4,728,576 - DDA3937_RS20810 0.89 +0.4 4,728,576 - DDA3937_RS20810 0.89 +0.5 4,728,576 - DDA3937_RS20810 0.89 -0.7 4,728,576 - DDA3937_RS20810 0.89 -1.5 4,728,592 - +1.2 4,728,592 - -1.5 4,728,635 + +0.1 4,728,635 + -1.7 4,728,636 - -2.0 4,728,636 - +2.2 4,728,754 + DDA3937_RS20815 0.11 +1.0 4,728,754 + DDA3937_RS20815 0.11 +1.4 4,728,755 - DDA3937_RS20815 0.11 -0.8 4,728,755 - DDA3937_RS20815 0.11 -1.0 4,728,815 + DDA3937_RS20815 0.15 +1.6 4,728,974 + DDA3937_RS20815 0.27 +0.8 4,728,974 + DDA3937_RS20815 0.27 -0.3 4,728,974 + DDA3937_RS20815 0.27 -0.0 4,729,067 - DDA3937_RS20815 0.34 -0.4 4,729,154 + DDA3937_RS20815 0.41 +0.5 4,729,154 + DDA3937_RS20815 0.41 +0.4 4,729,302 + DDA3937_RS20815 0.52 +1.3 4,729,302 + DDA3937_RS20815 0.52 +0.5 4,729,303 - DDA3937_RS20815 0.52 -0.3 4,729,303 - DDA3937_RS20815 0.52 -0.4 4,729,303 - DDA3937_RS20815 0.52 -0.6 4,729,500 - DDA3937_RS20815 0.67 -0.1 4,729,500 - DDA3937_RS20815 0.67 +0.7 4,729,544 + DDA3937_RS20815 0.70 -0.8 4,729,545 - DDA3937_RS20815 0.70 -0.3 4,729,550 + DDA3937_RS20815 0.71 +0.5 4,729,550 + DDA3937_RS20815 0.71 +3.3 4,729,551 - DDA3937_RS20815 0.71 +0.3 4,729,560 + DDA3937_RS20815 0.72 -3.4 4,729,561 - DDA3937_RS20815 0.72 +0.9 4,729,561 - DDA3937_RS20815 0.72 +0.1 4,729,576 + DDA3937_RS20815 0.73 -1.0 4,729,576 + DDA3937_RS20815 0.73 +0.9 4,729,576 + DDA3937_RS20815 0.73 -0.0 4,729,576 + DDA3937_RS20815 0.73 +2.8 4,729,576 + DDA3937_RS20815 0.73 +0.3 4,729,576 + DDA3937_RS20815 0.73 +0.8 4,729,576 + DDA3937_RS20815 0.73 +0.3 4,729,576 + DDA3937_RS20815 0.73 +0.9 4,729,576 + DDA3937_RS20815 0.73 -1.3 4,729,576 + DDA3937_RS20815 0.73 +1.3 4,729,576 + DDA3937_RS20815 0.73 +0.5 4,729,576 + DDA3937_RS20815 0.73 -0.8 4,729,576 + DDA3937_RS20815 0.73 +0.9 4,729,576 + DDA3937_RS20815 0.73 +1.2 4,729,577 - DDA3937_RS20815 0.73 +1.5 4,729,577 - DDA3937_RS20815 0.73 -0.2 4,729,577 - DDA3937_RS20815 0.73 +0.7 4,729,577 - DDA3937_RS20815 0.73 +0.5 4,729,577 - DDA3937_RS20815 0.73 +2.1 4,729,577 - DDA3937_RS20815 0.73 +1.1 4,729,577 - DDA3937_RS20815 0.73 +0.2 4,729,577 - DDA3937_RS20815 0.73 -0.3 4,729,577 - DDA3937_RS20815 0.73 +0.1 4,729,577 - DDA3937_RS20815 0.73 -0.9 4,729,577 - DDA3937_RS20815 0.73 -0.1 4,729,577 - DDA3937_RS20815 0.73 +1.6 4,729,577 - DDA3937_RS20815 0.73 +1.2 4,729,577 - DDA3937_RS20815 0.73 +0.2 4,729,577 - DDA3937_RS20815 0.73 +3.4 4,729,577 - +1.5 4,729,577 - DDA3937_RS20815 0.73 +0.6 4,729,577 - DDA3937_RS20815 0.73 +0.9 4,729,577 - DDA3937_RS20815 0.73 +2.4 4,729,577 - DDA3937_RS20815 0.73 +1.5 4,729,577 - DDA3937_RS20815 0.73 +0.4 4,729,577 - DDA3937_RS20815 0.73 -1.1 4,729,577 - DDA3937_RS20815 0.73 -0.0 4,729,579 + DDA3937_RS20815 0.73 +1.2 4,729,579 + DDA3937_RS20815 0.73 +0.0 4,729,579 + DDA3937_RS20815 0.73 +1.0 4,729,579 + DDA3937_RS20815 0.73 +1.0 4,729,579 + DDA3937_RS20815 0.73 -0.9 4,729,579 + DDA3937_RS20815 0.73 -0.1 4,729,579 + DDA3937_RS20815 0.73 +1.0 4,729,579 + DDA3937_RS20815 0.73 +0.7 4,729,579 + DDA3937_RS20815 0.73 -1.6 4,729,580 - DDA3937_RS20815 0.73 +2.5 4,729,580 - DDA3937_RS20815 0.73 -0.1 4,729,580 - DDA3937_RS20815 0.73 +0.5 4,729,580 - DDA3937_RS20815 0.73 +0.9 4,729,580 - DDA3937_RS20815 0.73 +2.0 4,729,580 - DDA3937_RS20815 0.73 +0.0 4,729,580 - DDA3937_RS20815 0.73 +2.7 4,729,580 - DDA3937_RS20815 0.73 +1.0 4,729,580 - DDA3937_RS20815 0.73 +0.4 4,729,580 - DDA3937_RS20815 0.73 +1.3 4,729,580 - DDA3937_RS20815 0.73 +0.9 4,729,580 - DDA3937_RS20815 0.73 -1.4 4,729,665 - DDA3937_RS20815 0.80 +0.3 4,729,665 - DDA3937_RS20815 0.80 +0.8 4,729,665 - DDA3937_RS20815 0.80 +0.6 4,729,763 + DDA3937_RS20815 0.87 +0.4 4,729,763 + DDA3937_RS20815 0.87 +1.9 4,729,763 + DDA3937_RS20815 0.87 -2.2 4,729,764 - DDA3937_RS20815 0.87 +0.7 4,729,764 - DDA3937_RS20815 0.87 +0.5 4,729,764 - DDA3937_RS20815 0.87 +0.5 4,729,764 - DDA3937_RS20815 0.87 +0.2 4,729,764 - DDA3937_RS20815 0.87 -0.8 4,729,775 - DDA3937_RS20815 0.88 +0.3 4,729,819 + +0.4 4,729,820 - -0.3 4,729,846 - +2.6 4,729,846 - +0.1 4,729,846 - +4.5 4,729,846 - +1.8 4,729,846 - -2.4 4,729,855 + -0.0 4,729,856 - +1.7 4,729,928 + +2.7 4,729,929 - +0.3 4,729,929 - +0.1 4,729,938 + +0.1 4,730,032 - -0.5 4,730,229 - DDA3937_RS20820 0.22 +1.1 4,730,229 - DDA3937_RS20820 0.22 -0.6 4,730,259 + DDA3937_RS20820 0.24 +1.0 4,730,259 + DDA3937_RS20820 0.24 +0.3 4,730,277 + DDA3937_RS20820 0.25 +1.7 4,730,278 - DDA3937_RS20820 0.25 +2.0 4,730,282 + DDA3937_RS20820 0.25 +0.3 4,730,283 - DDA3937_RS20820 0.25 -0.4 4,730,362 + DDA3937_RS20820 0.31 +0.2 4,730,373 + DDA3937_RS20820 0.32 +0.3 4,730,374 - DDA3937_RS20820 0.32 -0.2 4,730,387 + DDA3937_RS20820 0.33 +0.3 4,730,387 + DDA3937_RS20820 0.33 +0.6 4,730,451 + DDA3937_RS20820 0.37 -0.1 4,730,452 - DDA3937_RS20820 0.37 -1.9 4,730,455 - DDA3937_RS20820 0.38 +0.4 4,730,517 + DDA3937_RS20820 0.42 +5.4 4,730,517 + DDA3937_RS20820 0.42 +0.1 4,730,517 + DDA3937_RS20820 0.42 +1.0
Or see this region's nucleotide sequence