Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS20130

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,586,476	+		DDA3937_RS20120	0.81	+1.3
4,586,477	-		DDA3937_RS20120	0.81	-1.3
4,586,477	-		DDA3937_RS20120	0.81	+0.5
4,586,569	-		DDA3937_RS20120	0.87	+0.1
4,586,608	+		DDA3937_RS20120	0.89	+0.3
4,586,742	+				-1.3
4,586,783	+				-0.8
4,586,783	+				-2.0
4,586,783	+				+0.1
4,586,792	-				+0.2
4,586,792	-				+0.8
4,586,797	+				+0.5
4,586,807	+				+2.6
4,586,823	+				+0.1
4,586,824	-				+0.2
4,586,840	-				-0.8
4,586,840	-				+4.3
4,586,842	+				-0.5
4,586,842	+				-2.3
4,586,843	-				-0.5
4,586,843	-				+0.6
4,586,843	-				+0.5
4,586,843	-				+3.4
4,586,843	-				-0.3
4,586,843	-				+2.8
4,586,843	-				+1.0
4,586,867	+				-0.1
4,586,867	+				-1.7
4,586,867	+				-0.4
4,586,868	-				-0.5
4,586,868	-				-1.8
4,586,868	-				-1.1
4,586,868	-				-0.5
4,586,870	+				-0.5
4,586,870	+				-1.2
4,586,870	+				-0.5
4,586,889	+				-0.7
4,586,909	+				-0.5
4,586,909	+				-0.3
4,586,909	+				-0.4
4,586,910	-		DDA3937_RS20125	0.10	+0.4
4,586,945	+		DDA3937_RS20125	0.19	+0.5
4,586,946	-		DDA3937_RS20125	0.19	-1.8
4,586,964	+		DDA3937_RS20125	0.24	-0.3
4,586,989	-		DDA3937_RS20125	0.30	+2.7
4,587,012	+		DDA3937_RS20125	0.36	-0.1
4,587,013	-		DDA3937_RS20125	0.36	+1.6
4,587,013	-		DDA3937_RS20125	0.36	-0.2
4,587,013	-		DDA3937_RS20125	0.36	+0.5
4,587,013	-		DDA3937_RS20125	0.36	+1.5
4,587,057	+		DDA3937_RS20125	0.47	-1.2
4,587,058	-		DDA3937_RS20125	0.47	-0.5
4,587,059	+		DDA3937_RS20125	0.47	-2.4
4,587,060	-		DDA3937_RS20125	0.48	+0.8
4,587,060	-		DDA3937_RS20125	0.48	+1.9
4,587,066	-		DDA3937_RS20125	0.49	+0.6
4,587,112	+		DDA3937_RS20125	0.60	+3.1
4,587,112	+		DDA3937_RS20125	0.60	+0.8
4,587,156	-		DDA3937_RS20125	0.71	-0.5
4,587,174	-		DDA3937_RS20125	0.76	-0.5
4,587,249	+				+1.0
4,587,260	-				+1.7
4,587,286	+				-1.0
4,587,297	+				+1.0
4,587,298	-				+1.0
4,587,298	-				+0.1
4,587,298	-				+0.8
4,587,354	+				-2.1
4,587,354	+				+0.5
4,587,354	+				+0.5
4,587,364	-				+0.7
4,587,399	+				+1.9
4,587,399	+				-0.6
4,587,400	-				-0.6
4,587,416	-				-0.9
4,587,576	+		DDA3937_RS20130	0.14	-2.2
4,587,576	+		DDA3937_RS20130	0.14	+1.1
4,587,577	-		DDA3937_RS20130	0.15	-0.2
4,587,577	-		DDA3937_RS20130	0.15	-1.3
4,587,577	-		DDA3937_RS20130	0.15	-0.8
4,587,678	+		DDA3937_RS20130	0.21	+1.1
4,587,679	-		DDA3937_RS20130	0.21	-0.5
4,587,679	-		DDA3937_RS20130	0.21	-1.7
4,587,764	+		DDA3937_RS20130	0.27	-0.3
4,587,765	-		DDA3937_RS20130	0.27	-1.7
4,587,781	-		DDA3937_RS20130	0.28	-0.9
4,587,781	-		DDA3937_RS20130	0.28	-2.0
4,587,781	-		DDA3937_RS20130	0.28	+0.4
4,587,781	-		DDA3937_RS20130	0.28	+0.7
4,587,955	+		DDA3937_RS20130	0.40	-0.7
4,587,956	-		DDA3937_RS20130	0.40	-2.2
4,587,956	-		DDA3937_RS20130	0.40	+0.4
4,587,958	+		DDA3937_RS20130	0.40	-1.0
4,587,958	+		DDA3937_RS20130	0.40	-0.6
4,587,959	-		DDA3937_RS20130	0.40	-0.7
4,587,959	-		DDA3937_RS20130	0.40	-1.8
4,587,959	-		DDA3937_RS20130	0.40	-2.5
4,587,959	-		DDA3937_RS20130	0.40	+1.5
4,587,959	-		DDA3937_RS20130	0.40	-1.2
4,588,096	-		DDA3937_RS20130	0.50	+1.5
4,588,347	+		DDA3937_RS20130	0.67	-0.3
4,588,347	+		DDA3937_RS20130	0.67	-1.7
4,588,348	-		DDA3937_RS20130	0.67	-1.0
4,588,348	-		DDA3937_RS20130	0.67	+0.5
4,588,409	-		DDA3937_RS20130	0.71	-1.5
4,588,452	+		DDA3937_RS20130	0.74	-0.9
4,588,452	+		DDA3937_RS20130	0.74	-1.6
4,588,452	+		DDA3937_RS20130	0.74	+1.5
4,588,500	-		DDA3937_RS20130	0.77	-1.0
4,588,566	+		DDA3937_RS20130	0.81	-1.5
4,588,566	+		DDA3937_RS20130	0.81	-2.1
4,588,566	+		DDA3937_RS20130	0.81	-1.0
4,588,566	+		DDA3937_RS20130	0.81	-1.0
4,588,567	-		DDA3937_RS20130	0.81	-0.5
4,588,567	-		DDA3937_RS20130	0.81	-0.9
4,588,567	-		DDA3937_RS20130	0.81	-0.1
4,588,567	-		DDA3937_RS20130	0.81	+0.8
4,588,601	-		DDA3937_RS20130	0.84	-0.7
4,588,601	-		DDA3937_RS20130	0.84	-2.5
4,588,712	+				-1.1
4,588,712	+				+0.6
4,588,712	+				-0.1
4,588,712	+				+0.0
4,588,713	-				-1.2
4,588,741	-				-0.2
4,588,823	-				-1.7
4,588,823	-				-1.8
4,588,823	-				-2.6
4,588,823	-				-0.6
4,588,823	-				-0.5
4,588,830	+				-1.4
4,588,830	+				-1.8
4,588,830	+				-3.5
4,588,859	+				-1.8
4,588,859	+				-0.1
4,588,859	+				+0.9
4,588,860	-				+0.5
4,588,860	-				-1.5
4,588,879	+				-2.9
4,588,879	+				-0.4
4,588,879	+				-1.9
4,588,879	+				-1.3
4,588,880	-				-0.4
4,588,920	+				-2.1
4,588,920	+				-2.2
4,588,920	+				-0.4
4,588,925	+				-0.8
4,588,925	+				-1.1
4,588,925	+				+0.8
4,588,926	-				-0.0
4,588,926	-				+1.9
4,588,926	-				-1.3
4,588,926	-				-0.2
4,588,937	+				+0.4
4,588,937	+				+0.5
4,588,937	+				-1.9
4,588,938	-				+1.1
4,588,947	-				+1.0
4,588,956	+				+0.5
4,588,957	-				-0.4
4,588,957	-				-0.7
4,588,957	-				-0.2
4,588,957	-				+1.1
4,588,959	+				-0.3
4,588,960	-				-0.3
4,589,017	+				-0.3
4,589,232	+		DDA3937_RS20135	0.25	-1.8
4,589,316	+		DDA3937_RS20135	0.34	-1.5
4,589,316	+		DDA3937_RS20135	0.34	-2.5
4,589,317	-		DDA3937_RS20135	0.35	+0.4
4,589,651	+		DDA3937_RS20135	0.72	-0.3
4,589,652	-		DDA3937_RS20135	0.72	+5.8
4,589,652	-		DDA3937_RS20135	0.72	-1.8
4,589,667	+		DDA3937_RS20135	0.74	-1.8
4,589,667	+		DDA3937_RS20135	0.74	-0.3
4,589,667	+		DDA3937_RS20135	0.74	-3.2
4,589,667	+		DDA3937_RS20135	0.74	-0.0
4,589,668	-		DDA3937_RS20135	0.74	-1.3
4,589,668	-		DDA3937_RS20135	0.74	+3.7
4,589,668	-		DDA3937_RS20135	0.74	+0.5
4,589,668	-		DDA3937_RS20135	0.74	+0.1
4,589,746	+		DDA3937_RS20135	0.83	-0.7
4,589,746	+		DDA3937_RS20135	0.83	+0.2
4,589,747	-		DDA3937_RS20135	0.83	-1.3
4,589,747	-		DDA3937_RS20135	0.83	-3.1
4,589,747	-		DDA3937_RS20135	0.83	-0.5
4,589,774	+		DDA3937_RS20135	0.86	-1.1
4,589,775	-		DDA3937_RS20135	0.86	+3.4
4,589,775	-		DDA3937_RS20135	0.86	-0.7
4,589,775	-		DDA3937_RS20135	0.86	+2.2