Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS17975

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,102,714	+		DDA3937_RS17970	0.28	-2.5
4,102,714	+		DDA3937_RS17970	0.28	-0.6
4,102,714	+		DDA3937_RS17970	0.28	-0.4
4,102,714	+		DDA3937_RS17970	0.28	-1.2
4,102,715	-		DDA3937_RS17970	0.28	+2.1
4,102,715	-		DDA3937_RS17970	0.28	-0.3
4,102,818	+		DDA3937_RS17970	0.37	-0.9
4,102,897	+		DDA3937_RS17970	0.43	+0.7
4,102,897	+		DDA3937_RS17970	0.43	-1.6
4,102,898	-		DDA3937_RS17970	0.43	+0.4
4,102,918	+		DDA3937_RS17970	0.45	-0.2
4,102,919	-		DDA3937_RS17970	0.45	-1.5
4,102,919	-		DDA3937_RS17970	0.45	-1.9
4,102,928	-		DDA3937_RS17970	0.46	-0.3
4,102,928	-		DDA3937_RS17970	0.46	+3.2
4,102,950	+		DDA3937_RS17970	0.48	+0.8
4,102,950	+		DDA3937_RS17970	0.48	+0.5
4,102,950	+		DDA3937_RS17970	0.48	+0.1
4,102,950	+		DDA3937_RS17970	0.48	-0.3
4,102,950	+		DDA3937_RS17970	0.48	-0.6
4,102,950	+		DDA3937_RS17970	0.48	-1.4
4,102,950	+		DDA3937_RS17970	0.48	+0.4
4,102,950	+		DDA3937_RS17970	0.48	-1.0
4,102,951	-		DDA3937_RS17970	0.48	+5.5
4,103,056	+		DDA3937_RS17970	0.57	-0.7
4,103,056	+		DDA3937_RS17970	0.57	-0.1
4,103,056	+		DDA3937_RS17970	0.57	-0.1
4,103,077	+		DDA3937_RS17970	0.58	-1.2
4,103,077	+		DDA3937_RS17970	0.58	-2.0
4,103,077	+		DDA3937_RS17970	0.58	-0.6
4,103,078	-		DDA3937_RS17970	0.58	-1.4
4,103,120	-		DDA3937_RS17970	0.62	-1.0
4,103,132	-		DDA3937_RS17970	0.63	-0.1
4,103,132	-		DDA3937_RS17970	0.63	+0.4
4,103,140	+		DDA3937_RS17970	0.64	-0.1
4,103,141	-		DDA3937_RS17970	0.64	-0.9
4,103,141	-		DDA3937_RS17970	0.64	+0.3
4,103,144	+		DDA3937_RS17970	0.64	-0.6
4,103,144	+		DDA3937_RS17970	0.64	+0.8
4,103,144	+		DDA3937_RS17970	0.64	-2.2
4,103,145	-		DDA3937_RS17970	0.64	-0.6
4,103,145	-		DDA3937_RS17970	0.64	-0.8
4,103,145	-		DDA3937_RS17970	0.64	-2.2
4,103,152	+		DDA3937_RS17970	0.65	-0.2
4,103,152	+		DDA3937_RS17970	0.65	+3.1
4,103,183	+		DDA3937_RS17970	0.67	-1.7
4,103,324	+		DDA3937_RS17970	0.79	-0.1
4,103,325	-		DDA3937_RS17970	0.79	-0.3
4,103,347	-		DDA3937_RS17970	0.81	-0.2
4,103,347	-		DDA3937_RS17970	0.81	-0.8
4,103,431	-		DDA3937_RS17970	0.88	-0.6
4,103,431	-		DDA3937_RS17970	0.88	-0.4
4,103,441	+		DDA3937_RS17970	0.88	-0.8
4,103,488	+				+0.7
4,103,488	+				-0.6
4,103,535	+				-0.2
4,103,535	+				+0.1
4,103,535	+				-0.8
4,103,535	+				+0.3
4,103,535	+				+1.6
4,103,535	+				-0.8
4,103,535	+				+1.0
4,103,535	+				-0.4
4,103,535	+				+0.6
4,103,535	+				+0.4
4,103,536	-				+1.8
4,103,536	-				-0.7
4,103,536	-				+1.1
4,103,536	-				-1.2
4,103,536	-				-2.7
4,103,536	-				+0.8
4,103,593	+				+0.3
4,103,593	+				-0.4
4,103,593	+				+0.1
4,103,593	+				+0.9
4,103,593	+				-1.2
4,103,593	+				-0.1
4,103,593	+				-0.3
4,103,593	+				-1.3
4,103,593	+				-1.6
4,103,594	-				+1.4
4,103,594	-				-1.4
4,103,594	-				+1.9
4,103,594	-				+0.9
4,103,594	-				+0.3
4,103,594	-				+1.4
4,103,594	-				-0.7
4,103,594	-				-0.7
4,103,594	-				+1.7
4,103,595	+				+0.9
4,103,595	+				-2.2
4,103,595	+				+0.1
4,103,595	+				+0.2
4,103,595	+				-0.0
4,103,595	+				-0.4
4,103,595	+				-0.6
4,103,595	+				-0.9
4,103,595	+				+2.8
4,103,595	+				-0.7
4,103,595	+				-1.1
4,103,595	+				+0.0
4,103,595	+				-0.5
4,103,595	+				+0.6
4,103,595	+				+2.4
4,103,595	+				-1.2
4,103,595	+				-1.6
4,103,596	-				+2.2
4,103,596	-				+0.0
4,103,596	-				-0.6
4,103,596	-				-0.8
4,103,596	-				-1.0
4,103,596	-				+1.5
4,103,596	-				+0.5
4,103,596	-				-0.6
4,103,596	-				-0.7
4,103,596	-				+0.1
4,103,596	-				-1.1
4,103,596	-				+1.7
4,103,614	+				+0.4
4,103,614	+				+0.2
4,103,640	+				-1.0
4,103,640	+				-1.9
4,103,641	-				-0.1
4,103,641	-				-0.3
4,103,641	-				+0.0
4,103,682	+				-1.9
4,103,683	-				-0.1
4,103,683	-				+0.6
4,103,683	-				+1.0
4,103,683	-				-1.3
4,103,683	-				-0.1
4,103,683	-				+0.8
4,103,683	-				-0.9
4,103,683	-				-1.1
4,103,683	-				-1.2
4,103,691	+				-0.8
4,103,691	+				-2.2
4,103,691	+				-2.2
4,103,691	+				+0.6
4,103,691	+				-1.4
4,103,691	+				-0.4
4,103,692	-				+1.3
4,103,692	-				-0.3
4,103,692	-				+1.7
4,103,693	+				+0.7
4,103,693	+				+0.3
4,103,693	+				+0.2
4,103,694	-				-0.1
4,103,694	-				-0.1
4,103,694	-				+0.0
4,103,694	-				-0.3
4,103,694	-				-0.1
4,103,694	-				+1.0
4,103,694	-				-0.8
4,103,794	+				+2.4
4,103,794	+				+0.3
4,103,794	+				-1.9
4,103,794	+				+1.6
4,103,794	+				-1.0
4,103,794	+				-1.7
4,103,795	-				+1.0
4,103,795	-				+0.2
4,103,795	-				+3.0
4,103,795	-				-1.4
4,103,795	-				+0.6
4,103,798	+				-0.6
4,103,798	+				+0.2
4,103,798	+				-1.7
4,103,798	+				-0.8
4,103,826	-		DDA3937_RS17975	0.12	-1.1
4,103,868	+		DDA3937_RS17975	0.16	+0.1
4,103,869	-		DDA3937_RS17975	0.16	+2.5
4,103,869	-				+0.4
4,103,877	-		DDA3937_RS17975	0.16	+0.5
4,103,894	-		DDA3937_RS17975	0.18	-1.3
4,103,947	+		DDA3937_RS17975	0.23	+1.8
4,104,080	+		DDA3937_RS17975	0.36	-0.7
4,104,218	+		DDA3937_RS17975	0.49	+3.0
4,104,218	+		DDA3937_RS17975	0.49	-0.9
4,104,219	-		DDA3937_RS17975	0.49	-1.4
4,104,219	-		DDA3937_RS17975	0.49	-0.4
4,104,219	-		DDA3937_RS17975	0.49	-1.0
4,104,219	-		DDA3937_RS17975	0.49	-0.6
4,104,221	+		DDA3937_RS17975	0.49	-0.2
4,104,221	+		DDA3937_RS17975	0.49	+4.8
4,104,221	+		DDA3937_RS17975	0.49	-1.9
4,104,221	+		DDA3937_RS17975	0.49	-0.2
4,104,222	-		DDA3937_RS17975	0.50	+0.5
4,104,222	-		DDA3937_RS17975	0.50	+1.1
4,104,240	+		DDA3937_RS17975	0.51	+1.4
4,104,240	+		DDA3937_RS17975	0.51	+0.1
4,104,240	+		DDA3937_RS17975	0.51	-0.0
4,104,241	-		DDA3937_RS17975	0.51	-1.5
4,104,241	-		DDA3937_RS17975	0.51	+0.0
4,104,241	-		DDA3937_RS17975	0.51	+2.0
4,104,294	-		DDA3937_RS17975	0.56	+0.7
4,104,365	+		DDA3937_RS17975	0.63	-2.2
4,104,365	+		DDA3937_RS17975	0.63	+1.0
4,104,365	+		DDA3937_RS17975	0.63	+1.5
4,104,365	+		DDA3937_RS17975	0.63	-0.2
4,104,366	-		DDA3937_RS17975	0.63	-0.4
4,104,372	-		DDA3937_RS17975	0.64	+0.0
4,104,372	-		DDA3937_RS17975	0.64	+0.9
4,104,476	+		DDA3937_RS17975	0.74	-0.3
4,104,476	+		DDA3937_RS17975	0.74	-2.3
4,104,477	-		DDA3937_RS17975	0.74	+0.9
4,104,477	-		DDA3937_RS17975	0.74	-0.8
4,104,477	-		DDA3937_RS17975	0.74	-0.0
4,104,572	+		DDA3937_RS17975	0.83	+0.1
4,104,572	+		DDA3937_RS17975	0.83	+0.8
4,104,572	+				+2.9
4,104,573	-		DDA3937_RS17975	0.83	-0.8
4,104,573	-		DDA3937_RS17975	0.83	-0.6
4,104,606	+		DDA3937_RS17975	0.86	+0.3
4,104,633	+		DDA3937_RS17975	0.89	+0.7
4,104,633	+		DDA3937_RS17975	0.89	-1.7
4,104,633	+		DDA3937_RS17975	0.89	-1.2
4,104,634	-		DDA3937_RS17975	0.89	-0.7
4,104,634	-		DDA3937_RS17975	0.89	+0.7
4,104,634	-		DDA3937_RS17975	0.89	-0.0
4,104,641	+		DDA3937_RS17975	0.90	+1.4
4,104,641	+		DDA3937_RS17975	0.90	-0.6
4,104,683	+				-0.3
4,104,683	+				+0.4
4,104,684	-				-0.6
4,104,684	-				+0.6
4,104,684	-				+1.8
4,104,705	+				+1.2
4,104,705	+				+0.8
4,104,705	+				-1.0
4,104,705	+				-0.6
4,104,705	+				-2.0
4,104,705	+				-2.2
4,104,705	+				-0.4
4,104,705	+				-0.7
4,104,706	-				-1.4
4,104,706	-				-0.7
4,104,706	-				-0.2
4,104,706	-				-0.0
4,104,706	-				-0.9
4,104,706	-				-0.4
4,104,706	-				+0.4
4,104,706	-				+1.2
4,104,714	-				-3.2
4,104,729	-				-0.6
4,104,798	+				-0.2
4,104,798	+				+0.7
4,104,798	+				-0.5
4,104,798	+				+0.2
4,104,798	+				-1.1
4,104,799	-				+0.1
4,104,799	-				-1.2
4,104,799	-				-0.0
4,104,799	-				-1.5
4,104,813	+				-0.4
4,104,813	+				-0.5
4,104,813	+				+0.2
4,104,813	+				+0.5
4,104,814	-				+0.6
4,104,822	+				+1.4
4,104,822	+				+0.2
4,104,823	-				+1.4
4,104,823	-				-0.5
4,104,823	-				-0.3
4,104,823	-				+1.0
4,104,910	+				-1.2
4,104,920	+				-0.5
4,104,920	+				-1.4
4,104,920	+				+0.7
4,105,626	+		DDA3937_RS17985	0.12	-0.5
4,105,626	+		DDA3937_RS17985	0.12	-1.7
4,105,627	-		DDA3937_RS17985	0.13	+0.3
4,105,627	-		DDA3937_RS17985	0.13	-1.4
4,105,627	-				+0.4
4,105,627	-		DDA3937_RS17985	0.13	-0.6