Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS17935

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,094,025	-		DDA3937_RS17930	0.56	+1.7
4,094,028	-		DDA3937_RS17930	0.56	-1.9
4,094,092	-		DDA3937_RS17930	0.64	+0.1
4,094,092	-		DDA3937_RS17930	0.64	-0.7
4,094,444	-				-0.2
4,094,546	-				-0.6
4,094,574	-				-2.4
4,094,645	+				-0.8
4,094,688	+				-1.9
4,094,689	-				-0.6
4,094,699	-				-0.3
4,094,699	-				-0.6
4,094,704	+				-0.9
4,094,710	-				-0.0
4,094,710	-				+2.4
4,094,710	-				+1.2
4,094,710	-				+0.4
4,094,771	+				-0.3
4,094,771	+				+0.2
4,094,771	+				+1.0
4,094,787	+				+1.4
4,094,820	-				+1.1
4,094,851	-				-1.4
4,094,851	-				-0.3
4,094,866	+				-0.3
4,094,900	+				+1.4
4,094,930	-				-1.6
4,094,930	-				-0.4
4,094,930	-				-0.1
4,094,936	-				-0.1
4,094,936	-				+0.7
4,094,936	-				-0.9
4,094,939	+				+0.4
4,095,005	+				-0.4
4,095,006	-				+0.3
4,095,011	+				+0.9
4,095,011	+				-0.8
4,095,012	-				-1.4
4,095,012	-				+0.2
4,095,062	+				-0.3
4,095,062	+				+0.2
4,095,062	+				+0.8
4,095,062	+				+0.5
4,095,064	+				-0.4
4,095,064	+				+0.7
4,095,064	+				-0.3
4,095,064	+				+0.1
4,095,064	+				-1.4
4,095,064	+				-0.2
4,095,064	+				-0.9
4,095,064	+				-2.3
4,095,064	+				-1.4
4,095,064	+				-1.6
4,095,064	+				-0.2
4,095,064	+				-1.9
4,095,065	-				+0.8
4,095,065	-				-2.2
4,095,065	-				+1.0
4,095,065	-				+1.2
4,095,065	-				-0.3
4,095,065	-				+0.4
4,095,065	-				+1.2
4,095,065	-				-0.9
4,095,065	-				-0.5
4,095,065	-				+0.1
4,095,065	-				+0.6
4,095,256	-		DDA3937_RS17935	0.18	-0.7
4,095,258	-		DDA3937_RS17935	0.18	-2.1
4,095,261	+		DDA3937_RS17935	0.18	+0.3
4,095,262	-				+2.2
4,095,300	+		DDA3937_RS17935	0.21	+1.0
4,095,300	+		DDA3937_RS17935	0.21	+1.0
4,095,301	-		DDA3937_RS17935	0.21	-0.8
4,095,301	-		DDA3937_RS17935	0.21	-0.0
4,095,312	+		DDA3937_RS17935	0.22	-2.5
4,095,312	+		DDA3937_RS17935	0.22	+0.4
4,095,313	-		DDA3937_RS17935	0.22	+1.6
4,095,313	-		DDA3937_RS17935	0.22	-0.3
4,095,354	+		DDA3937_RS17935	0.25	-0.7
4,095,354	+		DDA3937_RS17935	0.25	+0.5
4,095,354	+		DDA3937_RS17935	0.25	-0.8
4,095,354	+		DDA3937_RS17935	0.25	-0.4
4,095,354	+		DDA3937_RS17935	0.25	-2.2
4,095,354	+		DDA3937_RS17935	0.25	+0.5
4,095,354	+		DDA3937_RS17935	0.25	-1.8
4,095,355	-		DDA3937_RS17935	0.25	+1.0
4,095,355	-		DDA3937_RS17935	0.25	-1.1
4,095,355	-		DDA3937_RS17935	0.25	+0.4
4,095,428	+		DDA3937_RS17935	0.31	+1.2
4,095,428	+		DDA3937_RS17935	0.31	+0.4
4,095,428	+		DDA3937_RS17935	0.31	-0.5
4,095,750	+		DDA3937_RS17935	0.55	+1.8
4,095,750	+		DDA3937_RS17935	0.55	+0.8
4,095,750	+		DDA3937_RS17935	0.55	-2.1
4,095,750	+		DDA3937_RS17935	0.55	+0.8
4,095,750	+		DDA3937_RS17935	0.55	-0.9
4,095,750	+		DDA3937_RS17935	0.55	+0.0
4,095,750	+		DDA3937_RS17935	0.55	-1.5
4,095,751	-		DDA3937_RS17935	0.55	-1.6
4,095,751	-		DDA3937_RS17935	0.55	+4.9
4,095,783	+		DDA3937_RS17935	0.57	+0.2
4,095,812	+		DDA3937_RS17935	0.59	-0.0
4,095,863	+		DDA3937_RS17935	0.63	-0.5
4,095,880	+		DDA3937_RS17935	0.64	+0.4
4,095,903	+		DDA3937_RS17935	0.66	-0.2
4,095,903	+		DDA3937_RS17935	0.66	-1.4
4,095,904	-		DDA3937_RS17935	0.66	-1.7
4,095,904	-		DDA3937_RS17935	0.66	+0.9
4,095,904	-		DDA3937_RS17935	0.66	-0.1
4,095,904	-		DDA3937_RS17935	0.66	+2.8
4,095,904	-		DDA3937_RS17935	0.66	-2.6
4,095,919	-		DDA3937_RS17935	0.67	-0.9
4,095,939	+		DDA3937_RS17935	0.69	+0.8
4,095,939	+		DDA3937_RS17935	0.69	+0.4
4,095,985	+		DDA3937_RS17935	0.72	+1.1
4,095,986	-		DDA3937_RS17935	0.72	-0.3
4,096,059	+		DDA3937_RS17935	0.78	+0.7
4,096,059	+		DDA3937_RS17935	0.78	-0.5
4,096,059	+		DDA3937_RS17935	0.78	-0.2
4,096,059	+		DDA3937_RS17935	0.78	-1.0
4,096,059	+		DDA3937_RS17935	0.78	-0.9
4,096,059	+		DDA3937_RS17935	0.78	+0.4
4,096,059	+		DDA3937_RS17935	0.78	+0.2
4,096,059	+		DDA3937_RS17935	0.78	+1.5
4,096,059	+		DDA3937_RS17935	0.78	+0.2
4,096,059	+		DDA3937_RS17935	0.78	-1.4
4,096,059	+		DDA3937_RS17935	0.78	-0.6
4,096,059	+		DDA3937_RS17935	0.78	+0.3
4,096,059	+		DDA3937_RS17935	0.78	-1.9
4,096,059	+		DDA3937_RS17935	0.78	-2.0
4,096,060	-		DDA3937_RS17935	0.78	-0.8
4,096,060	-		DDA3937_RS17935	0.78	-0.0
4,096,060	-		DDA3937_RS17935	0.78	+0.7
4,096,060	-		DDA3937_RS17935	0.78	+1.2
4,096,060	-		DDA3937_RS17935	0.78	+1.1
4,096,060	-		DDA3937_RS17935	0.78	-0.1
4,096,063	+		DDA3937_RS17935	0.78	-0.4
4,096,063	+				-0.2
4,096,063	+		DDA3937_RS17935	0.78	+0.5
4,096,063	+		DDA3937_RS17935	0.78	-0.7
4,096,063	+		DDA3937_RS17935	0.78	+0.3
4,096,064	-		DDA3937_RS17935	0.78	+0.4
4,096,064	-		DDA3937_RS17935	0.78	+1.4
4,096,064	-		DDA3937_RS17935	0.78	+0.5
4,096,166	+		DDA3937_RS17935	0.86	+0.8
4,096,224	+				+0.5
4,096,224	+				-0.6
4,096,224	+				-1.9
4,096,225	-				-1.6
4,096,225	-				+5.1
4,096,225	-				-1.0
4,096,241	+				-0.6
4,096,242	-				-0.2
4,096,242	-				-0.4
4,096,266	+				-0.8
4,096,266	+				-1.4
4,096,266	+				-0.1
4,096,266	+				+0.5
4,096,266	+				-1.0
4,096,266	+				-0.6
4,096,266	+				+0.9
4,096,266	+				+0.1
4,096,266	+				+0.8
4,096,266	+				-1.2
4,096,267	-				-0.9
4,096,267	-				+1.0
4,096,267	-				-1.3
4,096,267	-				+0.3
4,096,297	+				+0.8
4,096,372	+				-0.7
4,096,372	+				-0.2
4,096,373	-				-0.9
4,096,373	-				-0.2
4,096,436	+				+3.4
4,096,437	-				-1.1
4,096,437	-				-0.5
4,096,439	-				+0.8
4,096,447	-				-0.7
4,096,451	+				-1.4
4,096,452	-				+0.5
4,096,452	-				+1.0
4,096,452	-				+2.9
4,096,452	-				-0.9
4,096,455	+				-1.7
4,096,456	-				+0.6
4,096,456	-				+0.0
4,096,493	-				+1.4
4,096,543	-		DDA3937_RS17940	0.13	+0.8
4,096,543	-		DDA3937_RS17940	0.13	+0.0
4,096,586	-		DDA3937_RS17940	0.18	-0.4
4,096,668	-		DDA3937_RS17940	0.27	-0.6
4,096,668	-		DDA3937_RS17940	0.27	-0.1
4,096,668	-		DDA3937_RS17940	0.27	-0.0
4,096,714	+		DDA3937_RS17940	0.33	-1.6
4,096,715	-		DDA3937_RS17940	0.33	+2.4
4,096,719	+		DDA3937_RS17940	0.33	+0.1
4,096,719	+		DDA3937_RS17940	0.33	-0.5
4,096,719	+		DDA3937_RS17940	0.33	-1.0
4,096,859	+		DDA3937_RS17940	0.50	+1.5
4,096,904	-		DDA3937_RS17940	0.55	-2.0
4,097,007	+		DDA3937_RS17940	0.67	-0.6
4,097,007	+		DDA3937_RS17940	0.67	+0.6
4,097,008	-		DDA3937_RS17940	0.67	-1.5
4,097,008	-		DDA3937_RS17940	0.67	+0.0
4,097,009	+		DDA3937_RS17940	0.67	-0.8
4,097,009	+		DDA3937_RS17940	0.67	-0.8
4,097,009	+		DDA3937_RS17940	0.67	+0.7
4,097,010	-		DDA3937_RS17940	0.67	+0.6
4,097,010	-		DDA3937_RS17940	0.67	+0.1
4,097,010	-		DDA3937_RS17940	0.67	+3.1
4,097,010	-		DDA3937_RS17940	0.67	-0.2
4,097,010	-		DDA3937_RS17940	0.67	+0.6
4,097,010	-		DDA3937_RS17940	0.67	-0.7
4,097,018	+		DDA3937_RS17940	0.68	-0.2
4,097,018	+		DDA3937_RS17940	0.68	-0.8
4,097,019	-		DDA3937_RS17940	0.68	+1.6
4,097,019	-		DDA3937_RS17940	0.68	-2.5
4,097,071	+		DDA3937_RS17940	0.74	+0.8
4,097,072	-		DDA3937_RS17940	0.75	-1.2
4,097,074	+		DDA3937_RS17940	0.75	-1.2
4,097,074	+		DDA3937_RS17940	0.75	+0.6
4,097,075	-		DDA3937_RS17940	0.75	-0.4
4,097,075	-				-0.6
4,097,075	-		DDA3937_RS17940	0.75	+1.9
4,097,242	-				+0.1
4,097,272	+				+0.2
4,097,277	+				-0.6
4,097,278	-				+0.8