Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS17595

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,006,526	+		DDA3937_RS21700	0.27	+0.4
4,006,526	+		DDA3937_RS21700	0.27	-0.6
4,006,526	+		DDA3937_RS21700	0.27	+0.3
4,006,527	-		DDA3937_RS21700	0.27	+0.5
4,006,528	+		DDA3937_RS21700	0.27	-1.5
4,006,528	+		DDA3937_RS21700	0.27	+0.4
4,006,528	+		DDA3937_RS21700	0.27	-1.6
4,006,529	-		DDA3937_RS21700	0.27	+2.1
4,006,569	-		DDA3937_RS21700	0.30	-1.7
4,006,569	-		DDA3937_RS21700	0.30	+1.2
4,006,569	-		DDA3937_RS21700	0.30	-0.8
4,006,571	-		DDA3937_RS21700	0.30	-0.4
4,006,571	-		DDA3937_RS21700	0.30	-1.5
4,006,617	+		DDA3937_RS21700	0.34	+0.7
4,006,618	-		DDA3937_RS21700	0.34	-0.9
4,006,623	+		DDA3937_RS21700	0.34	-1.3
4,006,623	+		DDA3937_RS21700	0.34	-2.3
4,006,624	-				-0.6
4,006,624	-		DDA3937_RS21700	0.34	-0.1
4,006,624	-		DDA3937_RS21700	0.34	-1.4
4,006,624	-		DDA3937_RS21700	0.34	-1.3
4,006,674	+		DDA3937_RS21700	0.38	-0.9
4,006,684	-		DDA3937_RS21700	0.39	-2.2
4,006,739	+		DDA3937_RS21700	0.43	-0.3
4,006,739	+		DDA3937_RS21700	0.43	-0.1
4,006,739	+		DDA3937_RS21700	0.43	+0.1
4,006,739	+		DDA3937_RS21700	0.43	+1.0
4,006,740	-		DDA3937_RS21700	0.43	-1.1
4,006,741	+		DDA3937_RS21700	0.43	+1.8
4,006,747	+		DDA3937_RS21700	0.44	-1.2
4,006,747	+		DDA3937_RS21700	0.44	+0.3
4,006,747	+		DDA3937_RS21700	0.44	+0.8
4,006,747	+		DDA3937_RS21700	0.44	-0.7
4,006,748	-		DDA3937_RS21700	0.44	-1.6
4,006,760	+		DDA3937_RS21700	0.45	-0.5
4,006,760	+		DDA3937_RS21700	0.45	+0.1
4,006,761	-		DDA3937_RS21700	0.45	+1.4
4,006,764	-		DDA3937_RS21700	0.45	-0.6
4,006,792	+		DDA3937_RS21700	0.47	-1.5
4,006,792	+		DDA3937_RS21700	0.47	-0.5
4,006,792	+		DDA3937_RS21700	0.47	+0.7
4,006,792	+		DDA3937_RS21700	0.47	-0.3
4,006,793	-		DDA3937_RS21700	0.48	+1.6
4,006,796	+		DDA3937_RS21700	0.48	-1.2
4,006,796	+		DDA3937_RS21700	0.48	-1.4
4,006,796	+		DDA3937_RS21700	0.48	-2.4
4,006,796	+		DDA3937_RS21700	0.48	-1.1
4,006,796	+		DDA3937_RS21700	0.48	+1.4
4,006,797	-		DDA3937_RS21700	0.48	+0.3
4,006,797	-		DDA3937_RS21700	0.48	-0.1
4,006,797	-		DDA3937_RS21700	0.48	+0.5
4,006,797	-		DDA3937_RS21700	0.48	-0.6
4,006,797	-		DDA3937_RS21700	0.48	+0.1
4,006,797	-		DDA3937_RS21700	0.48	-1.1
4,006,797	-		DDA3937_RS21700	0.48	-1.3
4,006,798	+		DDA3937_RS21700	0.48	-0.1
4,006,829	-		DDA3937_RS21700	0.50	-0.2
4,006,853	-		DDA3937_RS21700	0.52	-2.2
4,006,900	+		DDA3937_RS21700	0.56	+0.8
4,006,901	-		DDA3937_RS21700	0.56	-0.1
4,006,901	-		DDA3937_RS21700	0.56	+0.6
4,006,919	-		DDA3937_RS21700	0.57	-0.9
4,006,925	+		DDA3937_RS21700	0.58	-1.6
4,006,940	+		DDA3937_RS21700	0.59	+0.2
4,006,940	+		DDA3937_RS21700	0.59	-0.2
4,006,940	+		DDA3937_RS21700	0.59	-0.7
4,006,941	-		DDA3937_RS21700	0.59	-2.2
4,006,941	-		DDA3937_RS21700	0.59	-1.0
4,006,941	-		DDA3937_RS21700	0.59	-0.3
4,006,941	-		DDA3937_RS21700	0.59	-0.0
4,006,941	-		DDA3937_RS21700	0.59	-1.6
4,006,941	-		DDA3937_RS21700	0.59	+0.4
4,006,941	-		DDA3937_RS21700	0.59	+0.7
4,006,941	-		DDA3937_RS21700	0.59	-0.2
4,006,941	-		DDA3937_RS21700	0.59	+0.2
4,006,941	-		DDA3937_RS21700	0.59	+2.0
4,006,977	+		DDA3937_RS21700	0.62	-1.5
4,007,045	+		DDA3937_RS21700	0.67	-1.4
4,007,045	+		DDA3937_RS21700	0.67	-1.6
4,007,071	+		DDA3937_RS21700	0.69	+1.1
4,007,094	+		DDA3937_RS21700	0.71	+0.2
4,007,104	+		DDA3937_RS21700	0.72	+0.6
4,007,105	-		DDA3937_RS21700	0.72	-0.1
4,007,105	-		DDA3937_RS21700	0.72	-0.1
4,007,233	+		DDA3937_RS21700	0.82	+5.5
4,007,234	-		DDA3937_RS21700	0.82	-2.0
4,007,234	-		DDA3937_RS21700	0.82	-0.5
4,007,272	+		DDA3937_RS21700	0.85	+0.4
4,007,272	+		DDA3937_RS21700	0.85	+4.6
4,007,343	+				-0.0
4,007,344	-				-1.9
4,007,344	-				-1.1
4,007,344	-				+0.2
4,007,348	+				+1.3
4,007,348	+				+5.1
4,007,348	+				+1.0
4,007,348	+				+0.2
4,007,349	-				-0.1
4,007,349	-				-0.4
4,007,407	+				-0.4
4,007,437	-				-0.3
4,007,462	+				-0.2
4,007,463	-				+0.4
4,007,466	-				-1.4
4,007,539	+		DDA3937_RS17595	0.15	+0.7
4,007,539	+		DDA3937_RS17595	0.15	-0.6
4,007,539	+		DDA3937_RS17595	0.15	+1.0
4,007,539	+		DDA3937_RS17595	0.15	-1.6
4,007,540	-		DDA3937_RS17595	0.15	-0.9
4,007,540	-		DDA3937_RS17595	0.15	+0.4
4,007,650	+		DDA3937_RS17595	0.42	-0.5
4,007,650	+		DDA3937_RS17595	0.42	+0.8
4,007,650	+		DDA3937_RS17595	0.42	-1.5
4,007,650	+		DDA3937_RS17595	0.42	-0.0
4,007,650	+		DDA3937_RS17595	0.42	+1.1
4,007,650	+		DDA3937_RS17595	0.42	-1.4
4,007,651	-		DDA3937_RS17595	0.42	-0.7
4,007,651	-		DDA3937_RS17595	0.42	+0.9
4,007,651	-		DDA3937_RS17595	0.42	-0.2
4,007,651	-		DDA3937_RS17595	0.42	+1.9
4,007,651	-		DDA3937_RS17595	0.42	-0.2
4,007,651	-		DDA3937_RS17595	0.42	-1.4
4,007,654	+		DDA3937_RS17595	0.43	-1.5
4,007,655	-		DDA3937_RS17595	0.43	+1.9
4,007,655	-		DDA3937_RS17595	0.43	-0.4
4,007,665	+		DDA3937_RS17595	0.45	+0.7
4,007,665	+		DDA3937_RS17595	0.45	+0.7
4,007,666	-		DDA3937_RS17595	0.45	+1.8
4,007,666	-		DDA3937_RS17595	0.45	+0.8
4,007,693	+		DDA3937_RS17595	0.52	+1.7
4,007,771	+		DDA3937_RS17595	0.70	+0.1
4,007,771	+		DDA3937_RS17595	0.70	-1.8
4,007,771	+		DDA3937_RS17595	0.70	+0.1
4,007,772	-				+1.7
4,007,881	+				-0.0
4,007,881	+				-0.5
4,007,882	-				-0.2
4,007,937	+				+0.2
4,007,938	-				-1.3
4,007,938	-				+0.1
4,007,938	-				+1.8
4,007,993	-				-2.3
4,007,993	-				+0.5
4,007,993	-				+0.4
4,007,994	+				+1.4
4,008,004	+				-0.3
4,008,005	-				-1.4
4,008,005	-				+2.2
4,008,036	+				-1.2
4,008,841	-		DDA3937_RS17600	0.55	+1.4
4,008,852	+		DDA3937_RS17600	0.56	+1.3