Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS15060

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,454,689	+		DDA3937_RS15055	0.57	-0.7
3,454,731	+		DDA3937_RS15055	0.60	+0.7
3,454,731	+		DDA3937_RS15055	0.60	-0.2
3,454,731	+		DDA3937_RS15055	0.60	+0.8
3,454,750	+		DDA3937_RS15055	0.61	+0.1
3,454,750	+		DDA3937_RS15055	0.61	+0.2
3,454,797	+		DDA3937_RS15055	0.65	+0.4
3,454,797	+		DDA3937_RS15055	0.65	-0.4
3,454,797	+		DDA3937_RS15055	0.65	-0.8
3,454,797	+		DDA3937_RS15055	0.65	-0.3
3,454,797	+		DDA3937_RS15055	0.65	+0.1
3,454,798	-		DDA3937_RS15055	0.65	-0.1
3,454,803	+		DDA3937_RS15055	0.65	-0.4
3,454,803	+		DDA3937_RS15055	0.65	-0.2
3,454,804	-		DDA3937_RS15055	0.65	+0.9
3,454,804	-		DDA3937_RS15055	0.65	-0.0
3,454,938	+		DDA3937_RS15055	0.75	+0.0
3,454,954	+		DDA3937_RS15055	0.76	-0.1
3,454,955	-		DDA3937_RS15055	0.76	+0.5
3,454,955	-		DDA3937_RS15055	0.76	+0.2
3,454,955	-		DDA3937_RS15055	0.76	-0.1
3,454,955	-		DDA3937_RS15055	0.76	+0.0
3,454,958	+		DDA3937_RS15055	0.77	-0.5
3,454,960	+		DDA3937_RS15055	0.77	+0.1
3,454,962	+		DDA3937_RS15055	0.77	-0.7
3,454,962	+		DDA3937_RS15055	0.77	-0.5
3,454,962	+		DDA3937_RS15055	0.77	-1.7
3,454,962	+		DDA3937_RS15055	0.77	-0.6
3,454,962	+		DDA3937_RS15055	0.77	+0.2
3,454,962	+		DDA3937_RS15055	0.77	-0.4
3,454,962	+		DDA3937_RS15055	0.77	+0.4
3,454,962	+		DDA3937_RS15055	0.77	-0.1
3,454,962	+		DDA3937_RS15055	0.77	+0.9
3,454,962	+		DDA3937_RS15055	0.77	+0.4
3,454,962	+		DDA3937_RS15055	0.77	+0.2
3,454,962	+		DDA3937_RS15055	0.77	-0.0
3,454,962	+		DDA3937_RS15055	0.77	-1.0
3,454,963	-		DDA3937_RS15055	0.77	+0.0
3,455,014	+		DDA3937_RS15055	0.81	-0.1
3,455,014	+		DDA3937_RS15055	0.81	+0.2
3,455,014	+		DDA3937_RS15055	0.81	+0.0
3,455,014	+		DDA3937_RS15055	0.81	-0.9
3,455,015	-		DDA3937_RS15055	0.81	-0.4
3,455,019	+		DDA3937_RS15055	0.81	+2.3
3,455,019	+		DDA3937_RS15055	0.81	-0.5
3,455,019	+		DDA3937_RS15055	0.81	-0.3
3,455,019	+		DDA3937_RS15055	0.81	+0.1
3,455,020	-		DDA3937_RS15055	0.81	-0.3
3,455,020	-		DDA3937_RS15055	0.81	-0.5
3,455,020	-		DDA3937_RS15055	0.81	-1.4
3,455,020	-		DDA3937_RS15055	0.81	+5.5
3,455,020	-		DDA3937_RS15055	0.81	-0.1
3,455,020	-		DDA3937_RS15055	0.81	-0.5
3,455,020	-		DDA3937_RS15055	0.81	-1.3
3,455,020	-		DDA3937_RS15055	0.81	-0.2
3,455,020	-		DDA3937_RS15055	0.81	-0.6
3,455,020	-		DDA3937_RS15055	0.81	+1.0
3,455,137	+		DDA3937_RS15055	0.90	-0.2
3,455,193	+				+0.7
3,455,193	+				-0.9
3,455,193	+				+2.3
3,455,194	-				+0.3
3,455,265	+				-0.6
3,455,275	+				+2.3
3,455,275	+				+0.2
3,455,275	+				-0.1
3,455,275	+				-1.4
3,455,275	+				+0.6
3,455,275	+				-1.7
3,455,275	+				-0.1
3,455,276	-				-0.2
3,455,276	-				+0.1
3,455,276	-				+1.6
3,455,308	+				+0.1
3,455,313	+				-0.0
3,455,313	+				+0.8
3,455,315	+				+0.2
3,455,321	+				-0.2
3,455,321	+				-0.1
3,455,321	+				+0.2
3,455,321	+				-1.3
3,455,321	+				-0.7
3,455,321	+				-1.2
3,455,321	+				+1.0
3,455,322	-				+0.2
3,455,322	-				-0.5
3,455,322	-				+0.2
3,455,322	-				-0.9
3,455,322	-				-0.2
3,455,322	-				+2.0
3,455,325	+				-0.6
3,455,325	+				-0.4
3,455,326	-				-0.4
3,455,326	-				-0.2
3,455,326	-				-1.3
3,455,326	-				-0.8
3,455,326	-				-0.1
3,455,327	+				+0.7
3,455,342	+				+0.3
3,455,342	+				-0.5
3,455,342	+				-0.4
3,455,342	+				-0.2
3,455,342	+				-0.4
3,455,343	-				-0.0
3,455,343	-				-0.3
3,455,343	-				-0.8
3,455,343	-				+0.3
3,455,343	-				+0.3
3,455,343	-				-2.2
3,455,353	+				+1.7
3,455,353	+				-1.5
3,455,353	+				+1.8
3,455,354	-				+0.4
3,455,354	-				+1.2
3,455,354	-				-1.8
3,455,432	+				-0.7
3,455,443	+				-0.7
3,455,483	+				-2.3
3,455,483	+				-0.4
3,455,484	-				-1.7
3,455,492	+				-0.8
3,455,493	-				-0.2
3,455,493	-				-0.3
3,455,494	+				-0.8
3,455,494	+				-0.4
3,455,495	-				+0.6
3,455,495	-				+1.2
3,455,502	+				-0.1
3,455,502	+				-0.1
3,455,503	-				+1.5
3,455,503	-				-1.2
3,455,503	-				-0.3
3,455,503	-				-0.7
3,455,504	+				-0.6
3,455,505	-				+0.2
3,455,513	+				+3.0
3,455,513	+				-0.5
3,455,523	+				-1.8
3,455,523	+				-0.3
3,455,524	-				-1.6
3,455,577	-				-2.0
3,455,585	+				+0.8
3,455,585	+				+0.6
3,455,586	-				-0.8
3,455,587	+				-0.7
3,455,588	-				-1.4
3,455,588	-				+0.3
3,455,588	-				-1.8
3,455,589	+				-0.8
3,455,600	+				+0.3
3,455,600	+				-3.2
3,455,791	+		DDA3937_RS15060	0.15	-0.8
3,455,879	+		DDA3937_RS15060	0.22	-1.4
3,455,879	+				+1.8
3,455,880	-		DDA3937_RS15060	0.23	+0.2
3,456,470	+		DDA3937_RS15060	0.71	-0.4
3,456,828	+				+0.6
3,456,899	+		DDA3937_RS15065	0.10	-0.2
3,456,899	+		DDA3937_RS15065	0.10	-0.8
3,456,900	-		DDA3937_RS15065	0.10	-0.6
3,456,952	-		DDA3937_RS15065	0.17	-0.6
3,456,952	-		DDA3937_RS15065	0.17	-0.2
3,457,010	-		DDA3937_RS15065	0.24	-1.3
3,457,010	-		DDA3937_RS15065	0.24	+0.2
3,457,060	+		DDA3937_RS15065	0.30	-0.1
3,457,060	+		DDA3937_RS15065	0.30	+0.6
3,457,060	+		DDA3937_RS15065	0.30	-1.0
3,457,060	+		DDA3937_RS15065	0.30	-2.2
3,457,061	-		DDA3937_RS15065	0.30	-0.8
3,457,094	+		DDA3937_RS15065	0.35	-1.4
3,457,094	+				-0.8
3,457,094	+		DDA3937_RS15065	0.35	-0.8
3,457,094	+		DDA3937_RS15065	0.35	-0.6
3,457,094	+		DDA3937_RS15065	0.35	+0.3
3,457,094	+		DDA3937_RS15065	0.35	-1.4
3,457,094	+		DDA3937_RS15065	0.35	-1.4
3,457,095	-		DDA3937_RS15065	0.35	-0.8
3,457,095	-		DDA3937_RS15065	0.35	-1.6
3,457,184	-		DDA3937_RS15065	0.46	-1.6
3,457,272	+		DDA3937_RS15065	0.57	-1.2
3,457,283	+				+1.2
3,457,283	+		DDA3937_RS15065	0.58	-1.8
3,457,283	+		DDA3937_RS15065	0.58	+1.2
3,457,284	-		DDA3937_RS15065	0.58	+0.2
3,457,284	-		DDA3937_RS15065	0.58	-2.4
3,457,403	+		DDA3937_RS15065	0.73	-0.8
3,457,403	+		DDA3937_RS15065	0.73	-1.8
3,457,404	-		DDA3937_RS15065	0.73	-2.6
3,457,404	-				-0.4
3,457,498	+		DDA3937_RS15065	0.85	-0.4
3,457,499	-		DDA3937_RS15065	0.85	+0.3
3,457,499	-		DDA3937_RS15065	0.85	-2.2
3,457,499	-		DDA3937_RS15065	0.85	-0.3
3,457,499	-		DDA3937_RS15065	0.85	-0.8
3,457,499	-		DDA3937_RS15065	0.85	+0.7
3,457,606	+				+0.2
3,457,606	+				-0.3
3,457,607	-				-1.8
3,457,607	-				-0.9
3,457,627	+				-0.0
3,457,627	+				-0.5