Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13935

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,166,573	+		DDA3937_RS13930	0.70	-0.7
3,166,573	+				-0.3
3,166,574	-		DDA3937_RS13930	0.70	-1.7
3,166,576	-		DDA3937_RS13930	0.71	-0.5
3,166,714	+				+0.4
3,166,739	+				-0.5
3,166,739	+				-0.3
3,166,739	+				+0.1
3,166,739	+				-1.3
3,166,739	+				-1.8
3,166,739	+				-1.6
3,166,740	-				-0.6
3,166,740	-				-1.0
3,166,740	-				-0.6
3,166,836	+				+0.6
3,166,836	+				-2.0
3,166,837	-				-1.6
3,166,868	+				+0.0
3,166,868	+				+0.6
3,166,878	-				-0.8
3,166,906	+				-1.1
3,166,906	+				-1.1
3,167,011	+				-1.1
3,167,063	+				-1.2
3,167,064	-				+0.6
3,167,068	-				+0.7
3,167,125	-				-0.9
3,167,180	+				+0.4
3,167,246	+				-0.6
3,167,308	+				+0.3
3,167,308	+				+2.6
3,167,308	+				-1.6
3,167,309	-				-0.1
3,167,329	-				+1.2
3,167,380	+				+0.4
3,167,380	+				-1.3
3,167,381	-				+0.1
3,167,444	-				-2.6
3,167,444	-				+1.0
3,167,452	-				+2.6
3,167,455	+				-0.0
3,167,455	+				+1.0
3,167,499	-				-1.2
3,167,503	+				+1.0
3,167,503	+				+1.6
3,167,503	+				+1.0
3,167,503	+				+1.2
3,167,503	+				+2.0
3,167,504	-				+0.3
3,167,504	-				-0.4
3,167,504	-				+0.9
3,167,504	-				+0.7
3,167,507	+				+0.9
3,167,508	-				-0.1
3,167,508	-				-0.0
3,167,508	-				-2.6
3,167,603	-		DDA3937_RS13935	0.20	-2.0
3,167,672	+		DDA3937_RS13935	0.36	+2.2
3,167,689	+		DDA3937_RS13935	0.41	+1.3
3,167,690	-		DDA3937_RS13935	0.41	+0.2
3,167,692	+		DDA3937_RS13935	0.41	-0.0
3,167,693	-		DDA3937_RS13935	0.42	+1.5
3,167,693	-		DDA3937_RS13935	0.42	-0.8
3,167,693	-		DDA3937_RS13935	0.42	-0.8
3,167,698	-		DDA3937_RS13935	0.43	-0.2
3,167,791	+		DDA3937_RS13935	0.65	+2.0
3,167,791	+		DDA3937_RS13935	0.65	+0.7
3,167,791	+		DDA3937_RS13935	0.65	+1.6
3,167,791	+		DDA3937_RS13935	0.65	+3.0
3,167,791	+		DDA3937_RS13935	0.65	+0.4
3,167,792	-		DDA3937_RS13935	0.66	+1.1
3,167,792	-		DDA3937_RS13935	0.66	+1.0
3,167,792	-		DDA3937_RS13935	0.66	+0.7
3,167,792	-		DDA3937_RS13935	0.66	+0.6
3,167,792	-		DDA3937_RS13935	0.66	-0.4
3,167,792	-		DDA3937_RS13935	0.66	+3.3
3,167,792	-		DDA3937_RS13935	0.66	+0.3
3,167,792	-		DDA3937_RS13935	0.66	+0.3
3,167,880	+		DDA3937_RS13935	0.87	+1.0
3,167,880	+		DDA3937_RS13935	0.87	+1.0
3,167,881	-		DDA3937_RS13935	0.87	-0.4
3,167,881	-		DDA3937_RS13935	0.87	-1.0
3,167,881	-		DDA3937_RS13935	0.87	-1.0
3,167,944	+				-0.6
3,168,018	+				-0.0
3,168,018	+				+0.5
3,168,019	-				+0.4
3,168,019	-				+1.0
3,168,019	-				+0.4
3,168,022	+				-0.0
3,168,044	+		DDA3937_RS13940	0.12	-0.0
3,168,122	+		DDA3937_RS13940	0.32	+2.0
3,168,126	+		DDA3937_RS13940	0.33	+0.7
3,168,126	+		DDA3937_RS13940	0.33	-1.0
3,168,126	+		DDA3937_RS13940	0.33	-0.1
3,168,127	-		DDA3937_RS13940	0.33	-0.6
3,168,127	-		DDA3937_RS13940	0.33	-1.6
3,168,127	-				-0.0
3,168,127	-		DDA3937_RS13940	0.33	-1.3
3,168,127	-		DDA3937_RS13940	0.33	+0.8
3,168,127	-		DDA3937_RS13940	0.33	+0.1
3,168,127	-		DDA3937_RS13940	0.33	+0.4
3,168,161	+		DDA3937_RS13940	0.42	+0.6
3,168,161	+		DDA3937_RS13940	0.42	+0.1
3,168,161	+		DDA3937_RS13940	0.42	+0.9
3,168,161	+				+1.6
3,168,161	+		DDA3937_RS13940	0.42	+0.4
3,168,162	-		DDA3937_RS13940	0.42	-1.1
3,168,364	+				+1.2
3,168,365	-				+1.4
3,168,365	-				-0.3
3,168,365	-				-2.3
3,168,365	-				-0.3
3,168,365	-				-1.1
3,168,365	-				-0.4
3,168,365	-				+0.4
3,168,388	+				+0.5
3,168,389	-				+0.1
3,168,419	+				+1.8
3,168,420	-				+1.3
3,168,420	-				+0.3
3,168,433	+				+1.0
3,168,433	+				-0.1
3,168,433	+				-0.7
3,168,434	-				+1.9
3,168,434	-				-0.3
3,168,434	-				-0.1
3,168,525	-				-1.3
3,168,525	-				+0.1
3,168,527	-				-1.3
3,168,527	-				+0.5
3,168,545	+		DDA3937_RS13945	0.11	+1.6
3,168,545	+		DDA3937_RS13945	0.11	+1.0
3,168,545	+		DDA3937_RS13945	0.11	+4.9
3,168,545	+		DDA3937_RS13945	0.11	-0.0
3,168,545	+		DDA3937_RS13945	0.11	+2.0
3,168,546	-		DDA3937_RS13945	0.11	-0.2
3,168,546	-		DDA3937_RS13945	0.11	-0.6
3,168,546	-		DDA3937_RS13945	0.11	+0.6
3,168,546	-		DDA3937_RS13945	0.11	-1.2
3,168,546	-		DDA3937_RS13945	0.11	+0.1
3,168,546	-		DDA3937_RS13945	0.11	+1.1
3,168,546	-		DDA3937_RS13945	0.11	-0.5
3,168,644	+		DDA3937_RS13945	0.18	+1.0
3,168,645	-		DDA3937_RS13945	0.18	+2.0
3,168,695	+		DDA3937_RS13945	0.22	+0.7
3,168,696	-		DDA3937_RS13945	0.22	+0.8
3,168,706	+		DDA3937_RS13945	0.23	-0.0
3,168,707	-		DDA3937_RS13945	0.23	+0.7
3,168,707	-		DDA3937_RS13945	0.23	-0.6
3,168,825	+		DDA3937_RS13945	0.32	+1.0
3,168,826	-		DDA3937_RS13945	0.32	+0.2
3,168,878	+		DDA3937_RS13945	0.36	+0.7
3,168,878	+		DDA3937_RS13945	0.36	-0.9
3,168,878	+		DDA3937_RS13945	0.36	-0.6
3,168,878	+		DDA3937_RS13945	0.36	-0.6
3,168,878	+		DDA3937_RS13945	0.36	-0.2
3,168,879	-		DDA3937_RS13945	0.36	+1.2
3,168,879	-		DDA3937_RS13945	0.36	-0.5
3,168,879	-		DDA3937_RS13945	0.36	-0.9
3,168,884	+		DDA3937_RS13945	0.36	-1.0
3,168,885	-		DDA3937_RS13945	0.37	-0.3
3,168,902	-		DDA3937_RS13945	0.38	-0.2
3,168,908	+		DDA3937_RS13945	0.38	-0.0
3,168,909	-		DDA3937_RS13945	0.38	+0.6
3,168,909	-		DDA3937_RS13945	0.38	+1.3