Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13300

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,034,380	-				+1.0
3,034,491	+				+0.9
3,034,491	+				-0.9
3,034,492	-				-0.2
3,034,519	-				+0.8
3,034,519	-				+0.3
3,034,519	-				-1.3
3,034,522	+				+0.3
3,034,522	+				-2.7
3,034,522	+				-2.2
3,034,523	-				+0.6
3,034,523	-				+0.5
3,034,596	+				-0.6
3,034,596	+				-0.4
3,034,610	+				-0.5
3,034,611	-				-0.4
3,034,611	-				+0.1
3,034,612	+				+0.0
3,034,634	+				-0.4
3,034,651	-				-0.9
3,034,651	-				-0.9
3,034,655	+				+0.8
3,034,655	+				-2.6
3,034,656	-				+0.1
3,034,662	-				+1.0
3,034,706	+				-0.8
3,034,707	-				-1.9
3,034,730	+				+0.7
3,034,731	-				+1.0
3,034,731	-				+0.3
3,034,761	-		DDA3937_RS13295	0.11	+0.8
3,034,764	+		DDA3937_RS13295	0.12	+0.4
3,034,764	+		DDA3937_RS13295	0.12	+0.8
3,034,764	+		DDA3937_RS13295	0.12	+0.5
3,034,764	+		DDA3937_RS13295	0.12	+2.0
3,034,765	-		DDA3937_RS13295	0.12	-0.6
3,034,765	-		DDA3937_RS13295	0.12	+3.4
3,034,765	-		DDA3937_RS13295	0.12	-2.5
3,034,765	-		DDA3937_RS13295	0.12	+0.3
3,034,774	+		DDA3937_RS13295	0.13	+1.2
3,034,774	+		DDA3937_RS13295	0.13	-0.2
3,034,774	+		DDA3937_RS13295	0.13	-1.0
3,034,775	-		DDA3937_RS13295	0.14	-1.2
3,034,775	-		DDA3937_RS13295	0.14	-0.4
3,034,777	-		DDA3937_RS13295	0.14	-1.6
3,034,777	-		DDA3937_RS13295	0.14	+0.1
3,034,777	-		DDA3937_RS13295	0.14	+2.8
3,034,787	+		DDA3937_RS13295	0.16	-0.2
3,034,797	+		DDA3937_RS13295	0.18	-1.8
3,034,798	-		DDA3937_RS13295	0.18	-2.4
3,034,798	-		DDA3937_RS13295	0.18	-1.0
3,034,798	-		DDA3937_RS13295	0.18	+0.2
3,034,859	+		DDA3937_RS13295	0.30	-0.0
3,034,889	+		DDA3937_RS13295	0.36	+0.8
3,034,889	+		DDA3937_RS13295	0.36	-0.3
3,034,890	-		DDA3937_RS13295	0.36	-0.1
3,034,890	-		DDA3937_RS13295	0.36	+4.1
3,034,906	-		DDA3937_RS13295	0.39	+0.4
3,034,935	-		DDA3937_RS13295	0.45	-0.4
3,034,961	+		DDA3937_RS13295	0.50	-0.5
3,034,962	-		DDA3937_RS13295	0.50	-2.3
3,034,962	-		DDA3937_RS13295	0.50	+0.1
3,035,006	-		DDA3937_RS13295	0.59	-1.0
3,035,040	+		DDA3937_RS13295	0.65	-1.9
3,035,040	+		DDA3937_RS13295	0.65	+0.2
3,035,040	+		DDA3937_RS13295	0.65	+0.4
3,035,041	-		DDA3937_RS13295	0.65	-0.5
3,035,082	+		DDA3937_RS13295	0.73	-0.8
3,035,105	-		DDA3937_RS13295	0.78	+0.1
3,035,235	+				-1.6
3,035,235	+				-1.2
3,035,235	+				+0.1
3,035,236	-				+1.0
3,035,236	-				-0.0
3,035,236	-				+0.6
3,035,245	-				-0.1
3,035,250	+				+2.2
3,035,250	+				+0.6
3,035,250	+				+0.4
3,035,250	+				+0.5
3,035,250	+				-1.9
3,035,250	+				-0.0
3,035,251	-				-1.4
3,035,251	-				+2.5
3,035,251	-				-1.1
3,035,251	-				+0.3
3,035,251	-				-0.5
3,035,251	-				-2.0
3,035,251	-				-0.2
3,035,251	-				-0.2
3,035,254	+				-0.8
3,035,254	+				+0.9
3,035,254	+				+0.7
3,035,255	-				+1.1
3,035,255	-				-2.4
3,035,255	-				+2.2
3,035,255	-				+0.2
3,035,255	-				-0.8
3,035,255	-				+1.0
3,035,255	-				-0.5
3,035,255	-				-1.0
3,035,255	-				+0.6
3,035,255	-				-1.0
3,035,255	-				-1.1
3,035,288	-				+0.4
3,035,396	+		DDA3937_RS13300	0.17	-0.6
3,035,397	-		DDA3937_RS13300	0.17	-1.0
3,035,397	-		DDA3937_RS13300	0.17	+1.1
3,035,397	-		DDA3937_RS13300	0.17	-1.4
3,035,428	+		DDA3937_RS13300	0.22	+0.1
3,035,428	+		DDA3937_RS13300	0.22	+2.1
3,035,461	+		DDA3937_RS13300	0.26	-1.4
3,035,558	+		DDA3937_RS13300	0.40	+2.2
3,035,558	+		DDA3937_RS13300	0.40	+0.3
3,035,574	+		DDA3937_RS13300	0.42	+0.4
3,035,574	+		DDA3937_RS13300	0.42	-0.2
3,035,575	-		DDA3937_RS13300	0.42	+1.1
3,035,620	-		DDA3937_RS13300	0.48	+0.5
3,035,620	-		DDA3937_RS13300	0.48	+0.3
3,035,620	-		DDA3937_RS13300	0.48	-0.8
3,035,620	-		DDA3937_RS13300	0.48	+2.0
3,035,650	-		DDA3937_RS13300	0.52	-2.4
3,035,710	-		DDA3937_RS13300	0.61	-2.0
3,035,772	+		DDA3937_RS13300	0.69	+2.3
3,035,772	+		DDA3937_RS13300	0.69	+1.9
3,035,773	-		DDA3937_RS13300	0.69	+0.8
3,035,773	-		DDA3937_RS13300	0.69	+1.7
3,035,786	+		DDA3937_RS13300	0.71	+0.2
3,035,786	+		DDA3937_RS13300	0.71	+3.6
3,035,786	+		DDA3937_RS13300	0.71	-3.6
3,035,786	+		DDA3937_RS13300	0.71	+1.8
3,035,787	-		DDA3937_RS13300	0.71	+1.0
3,035,787	-		DDA3937_RS13300	0.71	+1.7
3,035,819	+		DDA3937_RS13300	0.76	+0.9
3,035,820	-		DDA3937_RS13300	0.76	+0.5
3,035,903	+		DDA3937_RS13300	0.87	-1.3
3,035,908	+		DDA3937_RS13300	0.88	+0.5
3,035,908	+		DDA3937_RS13300	0.88	-1.5
3,035,908	+		DDA3937_RS13300	0.88	+1.1
3,035,908	+		DDA3937_RS13300	0.88	+1.3
3,035,909	-		DDA3937_RS13300	0.88	-0.4
3,035,937	-				+1.1
3,035,981	+				-0.2
3,035,981	+				+1.5
3,035,982	-				+1.4
3,035,982	-				-0.8
3,036,000	+				-0.6
3,036,001	-				+0.5
3,036,001	-				-0.6
3,036,001	-				+0.7
3,036,004	+				-1.2
3,036,004	+				-0.7
3,036,004	+				-0.1
3,036,004	+				+1.6
3,036,004	+				+0.6
3,036,005	-				-1.6
3,036,005	-				+2.1
3,036,005	-				+0.1
3,036,016	+				+1.3
3,036,035	-				-1.6
3,036,047	+				-0.7
3,036,048	-				-1.2
3,036,048	-				-1.9
3,036,048	-				+0.1
3,036,048	-				+0.6
3,036,048	-				-2.7
3,036,048	-				+0.4
3,036,067	+				+1.7
3,036,067	+				-0.6
3,036,067	+				+0.2
3,036,068	-				+0.3
3,036,068	-				-2.4
3,036,068	-				-1.6
3,036,068	-				-0.6
3,036,074	-				+0.8
3,036,121	+				-1.9
3,036,121	+				+0.1
3,036,126	+				-0.9
3,036,127	-				-0.3
3,036,127	-				-1.1
3,036,133	+				-1.2
3,036,134	-				+0.1
3,036,136	-				+0.8
3,036,140	+				-1.2
3,036,141	-				-1.0
3,036,161	+				-0.5
3,036,161	+				+1.4
3,036,161	+				-0.5
3,036,166	+				-0.8
3,036,167	-				+0.9
3,036,185	+				-1.3
3,036,186	-				+0.4
3,036,186	-				+0.7
3,036,186	-				-0.2
3,036,186	-				-0.8
3,036,186	-				+0.2
3,036,186	-				-1.6
3,036,191	+				+0.3
3,036,192	-				-0.3
3,036,201	+				+2.2
3,036,218	-				-1.0
3,036,220	+				-1.2
3,036,226	-				-0.6
3,036,228	+				-0.5
3,036,228	+				-1.0
3,036,307	+				-0.0
3,036,307	+				-0.8
3,036,308	-				-0.4
3,036,308	-				-1.4
3,036,310	+				+0.1
3,036,311	-				-2.0
3,036,316	-				+0.1
3,036,329	-				-0.9
3,036,375	+				-0.0
3,036,412	-				+0.2
3,036,595	+		DDA3937_RS13305	0.15	+0.8
3,036,595	+		DDA3937_RS13305	0.15	-0.2
3,036,596	-		DDA3937_RS13305	0.16	+0.3
3,036,619	+		DDA3937_RS13305	0.17	-1.6
3,036,620	-		DDA3937_RS13305	0.17	-0.1
3,036,620	-		DDA3937_RS13305	0.17	+0.3
3,036,620	-		DDA3937_RS13305	0.17	-0.0
3,036,751	+		DDA3937_RS13305	0.26	+0.8
3,036,752	-				+1.0