Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13290

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,032,404	-		DDA3937_RS13285	0.43	-0.3
3,032,462	-		DDA3937_RS13285	0.47	-0.0
3,032,617	+		DDA3937_RS13285	0.56	-0.3
3,032,617	+		DDA3937_RS13285	0.56	-0.7
3,032,617	+		DDA3937_RS13285	0.56	-0.8
3,032,617	+		DDA3937_RS13285	0.56	-1.5
3,032,618	-		DDA3937_RS13285	0.56	-0.6
3,032,659	+		DDA3937_RS13285	0.59	-0.2
3,032,659	+		DDA3937_RS13285	0.59	+1.6
3,032,659	+		DDA3937_RS13285	0.59	-1.7
3,032,659	+		DDA3937_RS13285	0.59	-0.9
3,032,659	+		DDA3937_RS13285	0.59	-1.4
3,032,731	+		DDA3937_RS13285	0.63	+0.4
3,032,731	+		DDA3937_RS13285	0.63	-0.1
3,032,731	+		DDA3937_RS13285	0.63	-2.0
3,032,731	+		DDA3937_RS13285	0.63	-0.6
3,032,731	+		DDA3937_RS13285	0.63	-0.6
3,032,732	-		DDA3937_RS13285	0.64	-0.2
3,032,732	-				-0.6
3,032,732	-		DDA3937_RS13285	0.64	+1.0
3,032,732	-		DDA3937_RS13285	0.64	-0.8
3,032,732	-		DDA3937_RS13285	0.64	-0.4
3,032,776	-		DDA3937_RS13285	0.66	-0.8
3,032,776	-		DDA3937_RS13285	0.66	-0.9
3,033,048	+		DDA3937_RS13285	0.83	+2.9
3,033,049	-		DDA3937_RS13285	0.83	-1.4
3,033,263	-				-0.6
3,033,274	+				-1.1
3,033,288	+				-0.5
3,033,288	+				-0.0
3,033,288	+				-2.0
3,033,288	+				-2.5
3,033,288	+				+1.3
3,033,289	-				-0.2
3,033,289	-				-0.4
3,033,289	-				-1.6
3,033,289	-				-0.1
3,033,289	-				-1.9
3,033,289	-				-1.1
3,033,289	-				-0.7
3,033,371	-				-0.6
3,033,392	+				+0.6
3,033,392	+				+4.9
3,033,393	-				-0.5
3,033,405	+				-0.7
3,033,405	+				+0.4
3,033,406	-				-1.0
3,033,406	-				-1.3
3,033,460	+				-1.0
3,033,460	+				-1.6
3,033,537	+		DDA3937_RS13290	0.19	-0.3
3,033,537	+		DDA3937_RS13290	0.19	-1.7
3,033,541	-		DDA3937_RS13290	0.20	+0.4
3,033,666	+		DDA3937_RS13290	0.36	+1.0
3,033,667	-		DDA3937_RS13290	0.36	-1.6
3,033,667	-		DDA3937_RS13290	0.36	-0.9
3,033,667	-		DDA3937_RS13290	0.36	-1.1
3,033,667	-		DDA3937_RS13290	0.36	+0.5
3,033,668	+		DDA3937_RS13290	0.36	-1.0
3,033,668	+		DDA3937_RS13290	0.36	-0.1
3,033,668	+		DDA3937_RS13290	0.36	-0.3
3,033,669	-		DDA3937_RS13290	0.36	-1.7
3,033,669	-		DDA3937_RS13290	0.36	+0.7
3,033,669	-		DDA3937_RS13290	0.36	-1.2
3,033,688	+		DDA3937_RS13290	0.38	+0.7
3,033,689	-		DDA3937_RS13290	0.39	-0.6
3,033,716	+		DDA3937_RS13290	0.42	+0.7
3,033,716	+		DDA3937_RS13290	0.42	-2.5
3,033,716	+		DDA3937_RS13290	0.42	-0.4
3,033,716	+		DDA3937_RS13290	0.42	-0.2
3,033,716	+		DDA3937_RS13290	0.42	-2.2
3,033,717	-		DDA3937_RS13290	0.42	-0.4
3,033,717	-		DDA3937_RS13290	0.42	-0.0
3,033,758	+		DDA3937_RS13290	0.47	-0.9
3,033,758	+		DDA3937_RS13290	0.47	+0.4
3,033,758	+		DDA3937_RS13290	0.47	+0.4
3,033,758	+		DDA3937_RS13290	0.47	-1.9
3,033,758	+		DDA3937_RS13290	0.47	-1.6
3,033,758	+		DDA3937_RS13290	0.47	+0.6
3,033,773	+				-0.0
3,033,774	-		DDA3937_RS13290	0.49	-0.9
3,033,855	+		DDA3937_RS13290	0.60	+0.1
3,033,855	+		DDA3937_RS13290	0.60	-1.5
3,033,855	+		DDA3937_RS13290	0.60	-0.6
3,033,855	+		DDA3937_RS13290	0.60	-0.9
3,033,856	-		DDA3937_RS13290	0.60	+0.9
3,033,856	-		DDA3937_RS13290	0.60	-0.8
3,033,856	-		DDA3937_RS13290	0.60	-0.9
3,033,871	-		DDA3937_RS13290	0.62	-0.5
3,033,947	-		DDA3937_RS13290	0.71	-1.4
3,033,947	-		DDA3937_RS13290	0.71	+1.2
3,033,947	-				+0.4
3,033,955	-		DDA3937_RS13290	0.72	+0.1
3,033,961	+		DDA3937_RS13290	0.73	+0.1
3,033,962	-		DDA3937_RS13290	0.73	-1.4
3,033,974	+		DDA3937_RS13290	0.75	+0.4
3,033,974	+		DDA3937_RS13290	0.75	-2.5
3,033,974	+		DDA3937_RS13290	0.75	+0.8
3,033,974	+		DDA3937_RS13290	0.75	-0.9
3,033,975	-		DDA3937_RS13290	0.75	-0.4
3,033,975	-		DDA3937_RS13290	0.75	-0.1
3,034,174	-				-0.4
3,034,184	+				-1.6
3,034,185	-				-2.2
3,034,185	-				-0.2
3,034,185	-				+0.5
3,034,185	-				+0.3
3,034,185	-				-2.2
3,034,206	-				+0.4
3,034,257	+				-1.0
3,034,258	-				+0.5
3,034,264	+				-0.5
3,034,380	-				+1.0
3,034,491	+				+0.9
3,034,491	+				-0.9
3,034,492	-				-0.2
3,034,519	-				+0.8
3,034,519	-				+0.3
3,034,519	-				-1.3
3,034,522	+				+0.3
3,034,522	+				-2.7
3,034,522	+				-2.2
3,034,523	-				+0.6
3,034,523	-				+0.5
3,034,596	+				-0.6
3,034,596	+				-0.4
3,034,610	+				-0.5
3,034,611	-				-0.4
3,034,611	-				+0.1
3,034,612	+				+0.0
3,034,634	+				-0.4
3,034,651	-				-0.9
3,034,651	-				-0.9
3,034,655	+				+0.8
3,034,655	+				-2.6
3,034,656	-				+0.1
3,034,662	-				+1.0
3,034,706	+				-0.8
3,034,707	-				-1.9
3,034,730	+				+0.7
3,034,731	-				+1.0
3,034,731	-				+0.3
3,034,761	-		DDA3937_RS13295	0.11	+0.8
3,034,764	+		DDA3937_RS13295	0.12	+0.4
3,034,764	+		DDA3937_RS13295	0.12	+0.8
3,034,764	+		DDA3937_RS13295	0.12	+0.5
3,034,764	+		DDA3937_RS13295	0.12	+2.0
3,034,765	-		DDA3937_RS13295	0.12	-0.6
3,034,765	-		DDA3937_RS13295	0.12	+3.4
3,034,765	-		DDA3937_RS13295	0.12	-2.5
3,034,765	-		DDA3937_RS13295	0.12	+0.3
3,034,774	+		DDA3937_RS13295	0.13	+1.2
3,034,774	+		DDA3937_RS13295	0.13	-0.2
3,034,774	+		DDA3937_RS13295	0.13	-1.0
3,034,775	-		DDA3937_RS13295	0.14	-1.2
3,034,775	-		DDA3937_RS13295	0.14	-0.4
3,034,777	-		DDA3937_RS13295	0.14	-1.6
3,034,777	-		DDA3937_RS13295	0.14	+0.1
3,034,777	-		DDA3937_RS13295	0.14	+2.8
3,034,787	+		DDA3937_RS13295	0.16	-0.2
3,034,797	+		DDA3937_RS13295	0.18	-1.8
3,034,798	-		DDA3937_RS13295	0.18	-2.4
3,034,798	-		DDA3937_RS13295	0.18	-1.0
3,034,798	-		DDA3937_RS13295	0.18	+0.2
3,034,859	+		DDA3937_RS13295	0.30	-0.0
3,034,889	+		DDA3937_RS13295	0.36	+0.8
3,034,889	+		DDA3937_RS13295	0.36	-0.3
3,034,890	-		DDA3937_RS13295	0.36	-0.1
3,034,890	-		DDA3937_RS13295	0.36	+4.1
3,034,906	-		DDA3937_RS13295	0.39	+0.4
3,034,935	-		DDA3937_RS13295	0.45	-0.4
3,034,961	+		DDA3937_RS13295	0.50	-0.5
3,034,962	-		DDA3937_RS13295	0.50	-2.3
3,034,962	-		DDA3937_RS13295	0.50	+0.1
3,035,006	-		DDA3937_RS13295	0.59	-1.0
3,035,040	+		DDA3937_RS13295	0.65	-1.9
3,035,040	+		DDA3937_RS13295	0.65	+0.2
3,035,040	+		DDA3937_RS13295	0.65	+0.4
3,035,041	-		DDA3937_RS13295	0.65	-0.5
3,035,082	+		DDA3937_RS13295	0.73	-0.8
3,035,105	-		DDA3937_RS13295	0.78	+0.1