Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS12630

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,873,493	+		DDA3937_RS12625	0.24	-0.6
2,873,493	+		DDA3937_RS12625	0.24	-0.8
2,873,493	+		DDA3937_RS12625	0.24	-0.7
2,873,494	-		DDA3937_RS12625	0.24	-3.2
2,873,494	-		DDA3937_RS12625	0.24	-0.5
2,873,570	-		DDA3937_RS12625	0.31	-1.1
2,873,570	-		DDA3937_RS12625	0.31	+0.4
2,873,570	-		DDA3937_RS12625	0.31	-0.1
2,873,611	+		DDA3937_RS12625	0.34	+1.9
2,873,611	+		DDA3937_RS12625	0.34	-1.2
2,873,611	+		DDA3937_RS12625	0.34	-0.1
2,873,612	-		DDA3937_RS12625	0.34	-0.5
2,873,620	+		DDA3937_RS12625	0.35	-1.0
2,873,620	+		DDA3937_RS12625	0.35	-0.0
2,873,620	+		DDA3937_RS12625	0.35	+2.7
2,873,620	+		DDA3937_RS12625	0.35	-0.7
2,873,620	+		DDA3937_RS12625	0.35	+0.7
2,873,621	-		DDA3937_RS12625	0.35	+0.8
2,873,621	-		DDA3937_RS12625	0.35	-1.1
2,873,621	-		DDA3937_RS12625	0.35	+0.2
2,873,621	-		DDA3937_RS12625	0.35	+1.8
2,873,621	-		DDA3937_RS12625	0.35	+0.3
2,873,621	-		DDA3937_RS12625	0.35	+0.3
2,873,621	-		DDA3937_RS12625	0.35	-0.5
2,873,621	-		DDA3937_RS12625	0.35	-2.2
2,873,621	-		DDA3937_RS12625	0.35	+1.7
2,873,860	-		DDA3937_RS12625	0.56	-0.7
2,873,860	-		DDA3937_RS12625	0.56	-0.7
2,873,860	-		DDA3937_RS12625	0.56	-0.1
2,873,884	-		DDA3937_RS12625	0.58	-1.7
2,873,913	+		DDA3937_RS12625	0.60	-0.7
2,873,913	+		DDA3937_RS12625	0.60	-0.2
2,873,913	+		DDA3937_RS12625	0.60	+0.5
2,873,930	+		DDA3937_RS12625	0.62	-0.2
2,873,930	+		DDA3937_RS12625	0.62	+0.1
2,873,976	-		DDA3937_RS12625	0.66	-0.5
2,874,018	+		DDA3937_RS12625	0.69	-0.7
2,874,018	+		DDA3937_RS12625	0.69	+0.9
2,874,019	-		DDA3937_RS12625	0.70	+0.4
2,874,019	-		DDA3937_RS12625	0.70	-0.6
2,874,019	-		DDA3937_RS12625	0.70	-1.1
2,874,044	+		DDA3937_RS12625	0.72	-0.5
2,874,044	+		DDA3937_RS12625	0.72	-1.4
2,874,050	+		DDA3937_RS12625	0.72	-0.1
2,874,070	+		DDA3937_RS12625	0.74	-0.4
2,874,070	+		DDA3937_RS12625	0.74	-0.9
2,874,070	+		DDA3937_RS12625	0.74	-3.2
2,874,070	+		DDA3937_RS12625	0.74	-1.0
2,874,070	+		DDA3937_RS12625	0.74	-2.1
2,874,071	-		DDA3937_RS12625	0.74	-0.1
2,874,071	-		DDA3937_RS12625	0.74	+0.1
2,874,071	-		DDA3937_RS12625	0.74	-1.1
2,874,071	-		DDA3937_RS12625	0.74	+0.4
2,874,071	-		DDA3937_RS12625	0.74	-0.3
2,874,071	-		DDA3937_RS12625	0.74	+0.2
2,874,071	-		DDA3937_RS12625	0.74	-0.7
2,874,071	-		DDA3937_RS12625	0.74	-0.7
2,874,071	-		DDA3937_RS12625	0.74	+0.9
2,874,130	+		DDA3937_RS12625	0.79	-0.6
2,874,130	+		DDA3937_RS12625	0.79	-1.2
2,874,130	+		DDA3937_RS12625	0.79	+0.1
2,874,169	+		DDA3937_RS12625	0.82	+0.5
2,874,169	+		DDA3937_RS12625	0.82	-1.7
2,874,169	+		DDA3937_RS12625	0.82	+0.5
2,874,169	+		DDA3937_RS12625	0.82	+0.0
2,874,170	-		DDA3937_RS12625	0.83	+0.2
2,874,170	-		DDA3937_RS12625	0.83	-0.8
2,874,170	-		DDA3937_RS12625	0.83	-0.4
2,874,177	+		DDA3937_RS12625	0.83	+1.5
2,874,177	+		DDA3937_RS12625	0.83	-0.1
2,874,178	-		DDA3937_RS12625	0.83	-0.2
2,874,193	+				-0.1
2,874,194	-		DDA3937_RS12625	0.85	+1.4
2,874,252	+		DDA3937_RS12625	0.90	+1.1
2,874,252	+		DDA3937_RS12625	0.90	+0.3
2,874,252	+		DDA3937_RS12625	0.90	-1.3
2,874,252	+		DDA3937_RS12625	0.90	-1.2
2,874,253	-		DDA3937_RS12625	0.90	+0.1
2,874,265	+				-1.1
2,874,268	+				-1.9
2,874,269	-				+0.5
2,874,323	+				-0.7
2,874,323	+				-1.2
2,874,323	+				-1.1
2,874,324	-				+0.0
2,874,324	-				+1.9
2,874,324	-				+1.7
2,874,324	-				-0.3
2,874,326	+				-0.5
2,874,326	+				+0.0
2,874,326	+				-1.1
2,874,327	-				+0.6
2,874,344	+				-0.1
2,874,345	-				+0.9
2,874,370	+				+0.9
2,874,370	+				-2.1
2,874,371	-				-1.4
2,874,470	-				+0.1
2,875,194	-				-0.4
2,875,215	+				-1.1
2,875,216	-				-2.1
2,875,337	+				-0.4
2,875,337	+				-0.1
2,875,338	-				-1.0
2,875,338	-				-1.3
2,875,364	+				+0.9
2,875,364	+				+0.2
2,875,365	-				-3.4
2,875,365	-				-1.4
2,875,365	-				-1.0
2,875,365	-				+0.3
2,875,388	+				+0.1
2,875,388	+				+0.2
2,875,388	+				-0.1
2,875,388	+				-0.8
2,875,388	+				-0.9
2,875,389	-				+0.8
2,875,389	-				-1.1
2,875,392	+				+2.3
2,875,393	-				+0.6
2,875,697	+		DDA3937_RS12635	0.23	+1.2
2,875,697	+		DDA3937_RS12635	0.23	+2.1
2,875,697	+		DDA3937_RS12635	0.23	-0.7
2,875,709	+		DDA3937_RS12635	0.24	+0.2
2,875,709	+		DDA3937_RS12635	0.24	-0.5
2,875,710	-				+0.6
2,875,710	-		DDA3937_RS12635	0.24	+0.1
2,875,710	-				+0.3
2,875,710	-		DDA3937_RS12635	0.24	-0.7
2,875,718	-		DDA3937_RS12635	0.25	+0.1
2,875,767	-		DDA3937_RS12635	0.28	-0.7
2,875,783	-		DDA3937_RS12635	0.29	-0.3
2,875,808	+		DDA3937_RS12635	0.31	+0.9
2,875,904	+		DDA3937_RS12635	0.38	-1.2
2,875,905	-		DDA3937_RS12635	0.38	+0.4
2,875,941	+		DDA3937_RS12635	0.41	-0.3
2,875,977	+		DDA3937_RS12635	0.44	-1.0
2,875,977	+		DDA3937_RS12635	0.44	-0.7
2,875,978	-		DDA3937_RS12635	0.44	-1.1
2,875,979	+		DDA3937_RS12635	0.44	-0.1
2,876,038	+		DDA3937_RS12635	0.48	-0.9
2,876,038	+		DDA3937_RS12635	0.48	-0.1
2,876,038	+		DDA3937_RS12635	0.48	-0.1
2,876,039	-		DDA3937_RS12635	0.48	-2.0
2,876,061	+		DDA3937_RS12635	0.50	-0.4
2,876,061	+		DDA3937_RS12635	0.50	-0.3
2,876,062	-		DDA3937_RS12635	0.50	-0.4