Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS12365

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,812,013	+				-0.5
2,812,013	+				-1.9
2,812,013	+				-1.5
2,812,014	-				-0.1
2,812,020	+				+0.2
2,812,063	+				-0.3
2,812,063	+				-1.2
2,812,064	-				-1.3
2,812,064	-				-0.1
2,812,113	+				+0.3
2,812,113	+				-0.3
2,812,114	-				-1.1
2,812,257	+		DDA3937_RS12360	0.21	+0.1
2,812,258	-		DDA3937_RS12360	0.21	+0.2
2,812,264	+		DDA3937_RS12360	0.22	-1.8
2,812,265	-		DDA3937_RS12360	0.22	+0.0
2,812,265	-		DDA3937_RS12360	0.22	+4.7
2,812,271	+		DDA3937_RS12360	0.23	-0.7
2,812,271	+		DDA3937_RS12360	0.23	-1.4
2,812,272	-				+0.9
2,812,341	+		DDA3937_RS12360	0.30	-0.5
2,812,341	+		DDA3937_RS12360	0.30	-0.1
2,812,342	-		DDA3937_RS12360	0.30	+0.9
2,812,375	+		DDA3937_RS12360	0.34	-0.4
2,812,375	+		DDA3937_RS12360	0.34	-1.4
2,812,375	+		DDA3937_RS12360	0.34	+1.1
2,812,375	+		DDA3937_RS12360	0.34	-1.4
2,812,376	-		DDA3937_RS12360	0.34	-0.1
2,812,376	-		DDA3937_RS12360	0.34	+0.0
2,812,758	-		DDA3937_RS12360	0.76	-1.3
2,812,767	-		DDA3937_RS12360	0.77	+0.4
2,812,886	+		DDA3937_RS12360	0.90	+0.7
2,812,886	+		DDA3937_RS12360	0.90	-1.3
2,812,886	+		DDA3937_RS12360	0.90	-1.5
2,812,886	+		DDA3937_RS12360	0.90	-0.4
2,812,887	-		DDA3937_RS12360	0.90	+0.7
2,812,887	-		DDA3937_RS12360	0.90	+4.0
2,812,887	-		DDA3937_RS12360	0.90	+0.3
2,812,887	-		DDA3937_RS12360	0.90	-0.1
2,812,887	-		DDA3937_RS12360	0.90	-0.7
2,812,887	-		DDA3937_RS12360	0.90	-1.1
2,813,150	+				+0.7
2,813,151	-				-0.7
2,813,228	+				+1.9
2,813,228	+				+0.1
2,813,228	+				-1.7
2,813,228	+				+1.5
2,813,229	-		DDA3937_RS12365	0.10	-0.1
2,813,581	+				-0.4
2,813,581	+		DDA3937_RS12365	0.25	+0.4
2,813,581	+		DDA3937_RS12365	0.25	-0.2
2,813,625	+		DDA3937_RS12365	0.27	+0.2
2,813,626	-		DDA3937_RS12365	0.27	+0.3
2,813,626	-		DDA3937_RS12365	0.27	+0.5
2,813,738	+		DDA3937_RS12365	0.32	-1.4
2,813,806	-		DDA3937_RS12365	0.35	-0.3
2,813,986	-		DDA3937_RS12365	0.42	+0.6
2,814,234	+		DDA3937_RS12365	0.53	-0.5
2,814,235	-		DDA3937_RS12365	0.53	+1.1
2,814,235	-		DDA3937_RS12365	0.53	-2.3
2,814,235	-		DDA3937_RS12365	0.53	+0.9
2,814,332	+		DDA3937_RS12365	0.57	-1.7
2,814,340	+		DDA3937_RS12365	0.58	-1.1
2,814,340	+		DDA3937_RS12365	0.58	-3.3
2,814,340	+		DDA3937_RS12365	0.58	-2.2
2,814,341	-		DDA3937_RS12365	0.58	-0.1
2,814,341	-		DDA3937_RS12365	0.58	+0.9
2,814,344	+		DDA3937_RS12365	0.58	-0.5
2,814,344	+		DDA3937_RS12365	0.58	-2.1
2,814,344	+		DDA3937_RS12365	0.58	+0.0
2,814,344	+		DDA3937_RS12365	0.58	+0.6
2,814,345	-		DDA3937_RS12365	0.58	+2.8
2,814,345	-		DDA3937_RS12365	0.58	-0.3
2,814,345	-		DDA3937_RS12365	0.58	-2.4
2,814,345	-		DDA3937_RS12365	0.58	+0.4
2,814,345	-		DDA3937_RS12365	0.58	-0.4
2,814,345	-		DDA3937_RS12365	0.58	+0.1
2,814,345	-		DDA3937_RS12365	0.58	-0.3
2,814,351	-		DDA3937_RS12365	0.58	-0.5
2,814,365	+		DDA3937_RS12365	0.59	-0.7
2,814,449	-		DDA3937_RS12365	0.62	-2.1
2,814,558	-		DDA3937_RS12365	0.67	-1.1
2,814,785	-		DDA3937_RS12365	0.77	+0.2
2,814,785	-		DDA3937_RS12365	0.77	-0.9
2,814,785	-		DDA3937_RS12365	0.77	-1.1
2,814,785	-		DDA3937_RS12365	0.77	-0.5
2,814,785	-		DDA3937_RS12365	0.77	-0.3
2,814,785	-		DDA3937_RS12365	0.77	+0.5
2,814,878	+		DDA3937_RS12365	0.81	-1.5
2,814,878	+		DDA3937_RS12365	0.81	-2.0
2,814,905	+		DDA3937_RS12365	0.82	-0.5
2,814,905	+		DDA3937_RS12365	0.82	-0.3
2,814,905	+		DDA3937_RS12365	0.82	+0.4
2,814,905	+		DDA3937_RS12365	0.82	-0.5
2,814,905	+		DDA3937_RS12365	0.82	-0.3
2,814,907	+		DDA3937_RS12365	0.82	-2.3
2,814,907	+		DDA3937_RS12365	0.82	+0.3
2,814,907	+		DDA3937_RS12365	0.82	-0.2
2,814,907	+		DDA3937_RS12365	0.82	-0.6
2,814,907	+		DDA3937_RS12365	0.82	-1.9
2,814,907	+		DDA3937_RS12365	0.82	-1.0
2,814,907	+		DDA3937_RS12365	0.82	-0.4
2,814,908	-		DDA3937_RS12365	0.82	+0.2
2,814,908	-		DDA3937_RS12365	0.82	-0.4
2,814,908	-		DDA3937_RS12365	0.82	+0.2
2,814,908	-		DDA3937_RS12365	0.82	+0.2
2,814,908	-		DDA3937_RS12365	0.82	+1.7
2,814,908	-		DDA3937_RS12365	0.82	-1.7
2,814,908	-		DDA3937_RS12365	0.82	+1.5
2,814,908	-		DDA3937_RS12365	0.82	-0.5
2,814,908	-		DDA3937_RS12365	0.82	+0.3
2,814,908	-		DDA3937_RS12365	0.82	+0.3
2,814,908	-				-0.4
2,814,911	+		DDA3937_RS12365	0.82	-0.1
2,814,911	+		DDA3937_RS12365	0.82	-3.5
2,814,911	+		DDA3937_RS12365	0.82	-0.1
2,814,912	-		DDA3937_RS12365	0.82	-0.2
2,815,182	-				+2.5
2,815,182	-				-0.7
2,815,371	+				-0.1
2,815,372	-				+0.3
2,815,398	-				-1.1
2,815,406	+				-0.8
2,815,407	-				+0.6
2,815,444	+				-1.3
2,815,444	+				-0.8
2,815,444	+				-0.7
2,815,444	+				-0.4
2,815,445	-				-0.7
2,815,445	-				-0.4
2,815,445	-				-0.1
2,815,521	+				+0.3
2,815,521	+		DDA3937_RS12370	0.14	-0.5
2,815,521	+		DDA3937_RS12370	0.14	-2.9
2,815,522	-		DDA3937_RS12370	0.14	+0.3
2,815,522	-		DDA3937_RS12370	0.14	+0.1
2,815,543	-		DDA3937_RS12370	0.18	+0.7
2,815,575	-		DDA3937_RS12370	0.24	-0.1
2,815,702	+		DDA3937_RS12370	0.47	+1.7
2,815,702	+				+2.7
2,815,702	+		DDA3937_RS12370	0.47	-0.3
2,815,703	-		DDA3937_RS12370	0.47	+1.8
2,815,703	-		DDA3937_RS12370	0.47	-0.3
2,815,723	-		DDA3937_RS12370	0.51	-0.3
2,815,726	+		DDA3937_RS12370	0.51	-2.7
2,815,726	+		DDA3937_RS12370	0.51	+0.3
2,815,726	+		DDA3937_RS12370	0.51	+0.1
2,815,726	+		DDA3937_RS12370	0.51	-1.7
2,815,726	+		DDA3937_RS12370	0.51	-1.3
2,815,726	+		DDA3937_RS12370	0.51	-0.6
2,815,726	+		DDA3937_RS12370	0.51	-1.3
2,815,727	-		DDA3937_RS12370	0.51	-1.5
2,815,727	-		DDA3937_RS12370	0.51	+0.7
2,815,727	-		DDA3937_RS12370	0.51	+0.9
2,815,727	-		DDA3937_RS12370	0.51	-0.1
2,815,927	+		DDA3937_RS12370	0.88	+0.5
2,815,928	-		DDA3937_RS12370	0.88	-1.8
2,815,958	+				+2.5
2,815,959	-				+2.0
2,815,959	-				-0.4
2,815,984	+				-2.2
2,816,014	+				+0.8
2,816,015	-				+0.7
2,816,045	+				-1.1
2,816,045	+				-2.4
2,816,045	+				-0.2
2,816,045	+				-0.7
2,816,046	-				-0.4
2,816,046	-				-2.4
2,816,051	+				+0.7
2,816,051	+				+1.3
2,816,051	+				-0.1
2,816,052	-				-0.3
2,816,052	-				+0.7
2,816,052	-				+1.3
2,816,089	+				-0.1
2,816,090	-				-0.5
2,816,096	+				+0.3
2,816,103	-				-0.3
2,816,161	+				-0.1
2,816,161	+				-0.1
2,816,162	-				+0.6
2,816,162	-				-0.3
2,816,162	-				-0.9
2,816,168	+				+0.3
2,816,169	-				-0.3
2,816,243	-				-1.2
2,816,302	-				+1.1
2,816,322	+				+0.9
2,816,323	-				-0.7
2,816,323	-				-0.7
2,816,323	-				-1.1
2,816,323	-				-0.0
2,816,325	+				-1.6
2,816,325	+				-0.7
2,816,326	-				-0.5
2,816,326	-				-0.1
2,816,326	-				+0.4