Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS12250

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,782,017	-		DDA3937_RS12245	0.39	+1.4
2,782,069	-		DDA3937_RS12245	0.46	-2.4
2,782,156	+		DDA3937_RS12245	0.56	+1.4
2,782,310	-		DDA3937_RS12245	0.75	+0.7
2,782,371	+		DDA3937_RS12245	0.83	-0.1
2,782,498	+				-0.1
2,782,499	-				+1.9
2,782,541	+				-0.2
2,782,553	+				-0.9
2,782,553	+				-1.1
2,782,553	+				-0.1
2,782,667	-				-0.7
2,782,667	-				-2.4
2,782,667	-				+0.9
2,782,669	+				-2.3
2,782,670	-				-1.3
2,782,688	+				-1.7
2,782,688	+				+0.2
2,782,689	-				+1.7
2,782,690	+				-0.1
2,782,691	-				-2.9
2,782,691	-				-1.6
2,782,691	-				-1.2
2,782,691	-				+0.7
2,782,691	-				-1.0
2,782,703	+				+0.5
2,782,704	-				-1.7
2,782,757	+				+0.7
2,782,758	-				-0.4
2,782,758	-				-0.3
2,782,768	-				+0.2
2,782,793	+				-1.8
2,782,814	-				+2.3
2,782,859	-				+0.4
2,782,871	-				-0.3
2,782,945	+				-0.4
2,782,946	-				-1.1
2,782,984	+		DDA3937_RS12250	0.10	-0.7
2,782,985	-		DDA3937_RS12250	0.10	-0.4
2,783,011	+		DDA3937_RS12250	0.12	-0.4
2,783,012	-		DDA3937_RS12250	0.12	-0.4
2,783,020	+		DDA3937_RS12250	0.13	+0.3
2,783,020	+		DDA3937_RS12250	0.13	+0.2
2,783,020	+		DDA3937_RS12250	0.13	-0.1
2,783,021	-		DDA3937_RS12250	0.13	-0.3
2,783,021	-		DDA3937_RS12250	0.13	+0.0
2,783,034	-		DDA3937_RS12250	0.14	-0.0
2,783,034	-		DDA3937_RS12250	0.14	+0.7
2,783,055	+		DDA3937_RS12250	0.15	-2.4
2,783,061	+		DDA3937_RS12250	0.15	+0.3
2,783,061	+		DDA3937_RS12250	0.15	-0.0
2,783,061	+		DDA3937_RS12250	0.15	+0.1
2,783,061	+		DDA3937_RS12250	0.15	-1.0
2,783,061	+		DDA3937_RS12250	0.15	-0.6
2,783,061	+		DDA3937_RS12250	0.15	-0.9
2,783,061	+		DDA3937_RS12250	0.15	-0.1
2,783,062	-		DDA3937_RS12250	0.15	+0.3
2,783,062	-		DDA3937_RS12250	0.15	-2.3
2,783,062	-		DDA3937_RS12250	0.15	-0.4
2,783,062	-		DDA3937_RS12250	0.15	-0.3
2,783,062	-		DDA3937_RS12250	0.15	+0.1
2,783,063	+		DDA3937_RS12250	0.15	-1.1
2,783,068	+		DDA3937_RS12250	0.16	-1.7
2,783,069	-		DDA3937_RS12250	0.16	-1.2
2,783,069	-		DDA3937_RS12250	0.16	-1.3
2,783,069	-		DDA3937_RS12250	0.16	-0.3
2,783,095	+		DDA3937_RS12250	0.17	-2.2
2,783,095	+		DDA3937_RS12250	0.17	-0.4
2,783,095	+		DDA3937_RS12250	0.17	+0.6
2,783,095	+		DDA3937_RS12250	0.17	+1.6
2,783,095	+		DDA3937_RS12250	0.17	+2.7
2,783,095	+		DDA3937_RS12250	0.17	-0.4
2,783,095	+				-0.1
2,783,095	+		DDA3937_RS12250	0.17	+1.2
2,783,095	+		DDA3937_RS12250	0.17	-1.1
2,783,096	-		DDA3937_RS12250	0.18	+1.3
2,783,096	-		DDA3937_RS12250	0.18	-0.9
2,783,143	+		DDA3937_RS12250	0.21	+1.5
2,783,143	+		DDA3937_RS12250	0.21	+0.6
2,783,144	-		DDA3937_RS12250	0.21	+0.1
2,783,193	+		DDA3937_RS12250	0.24	-1.4
2,783,193	+		DDA3937_RS12250	0.24	-0.7
2,783,194	-		DDA3937_RS12250	0.24	-0.3
2,783,194	-		DDA3937_RS12250	0.24	-0.1
2,783,194	-		DDA3937_RS12250	0.24	-1.4
2,783,198	+		DDA3937_RS12250	0.24	-0.5
2,783,198	+		DDA3937_RS12250	0.24	-0.0
2,783,211	-		DDA3937_RS12250	0.25	-0.3
2,783,223	-		DDA3937_RS12250	0.26	-0.9
2,783,341	+		DDA3937_RS12250	0.33	-1.2
2,783,341	+		DDA3937_RS12250	0.33	-0.1
2,783,342	-		DDA3937_RS12250	0.33	-1.0
2,783,342	-		DDA3937_RS12250	0.33	-0.5
2,783,342	-		DDA3937_RS12250	0.33	-0.4
2,783,342	-		DDA3937_RS12250	0.33	-0.9
2,783,354	+				+2.2
2,783,355	-		DDA3937_RS12250	0.34	-0.0
2,783,355	-		DDA3937_RS12250	0.34	+0.5
2,783,375	+		DDA3937_RS12250	0.36	-0.7
2,783,396	+		DDA3937_RS12250	0.37	+0.5
2,783,396	+		DDA3937_RS12250	0.37	-1.6
2,783,397	-		DDA3937_RS12250	0.37	-1.7
2,783,397	-		DDA3937_RS12250	0.37	-0.1
2,783,397	-		DDA3937_RS12250	0.37	+0.1
2,783,399	+		DDA3937_RS12250	0.37	-0.5
2,783,399	+		DDA3937_RS12250	0.37	-0.8
2,783,399	+		DDA3937_RS12250	0.37	+2.9
2,783,399	+		DDA3937_RS12250	0.37	+0.2
2,783,399	+		DDA3937_RS12250	0.37	-0.3
2,783,401	+		DDA3937_RS12250	0.37	+0.6
2,783,401	+		DDA3937_RS12250	0.37	+1.2
2,783,401	+		DDA3937_RS12250	0.37	-0.3
2,783,401	+		DDA3937_RS12250	0.37	+0.5
2,783,402	-		DDA3937_RS12250	0.37	+2.6
2,783,402	-		DDA3937_RS12250	0.37	-2.7
2,783,402	-				-1.1
2,783,402	-		DDA3937_RS12250	0.37	-1.4
2,783,461	+		DDA3937_RS12250	0.41	-0.5
2,783,461	+		DDA3937_RS12250	0.41	+0.3
2,783,462	-		DDA3937_RS12250	0.41	-1.7
2,783,462	-		DDA3937_RS12250	0.41	+0.6
2,783,468	+		DDA3937_RS12250	0.42	+0.5
2,783,489	+		DDA3937_RS12250	0.43	-0.2
2,783,623	-		DDA3937_RS12250	0.52	-0.8
2,783,627	+		DDA3937_RS12250	0.52	+0.5
2,783,637	-		DDA3937_RS12250	0.52	-1.7
2,783,637	-		DDA3937_RS12250	0.52	-0.7
2,783,637	-		DDA3937_RS12250	0.52	-0.8
2,783,690	+		DDA3937_RS12250	0.56	-1.2
2,783,691	-				-1.7
2,783,694	+		DDA3937_RS12250	0.56	-0.3
2,783,694	+		DDA3937_RS12250	0.56	+0.3
2,783,694	+		DDA3937_RS12250	0.56	+0.0
2,783,695	-		DDA3937_RS12250	0.56	+0.1
2,783,695	-		DDA3937_RS12250	0.56	+1.9
2,783,695	-		DDA3937_RS12250	0.56	-0.3
2,783,695	-		DDA3937_RS12250	0.56	-1.1
2,783,697	-		DDA3937_RS12250	0.56	-0.3
2,783,708	+		DDA3937_RS12250	0.57	+0.6
2,783,708	+		DDA3937_RS12250	0.57	-0.1
2,783,708	+		DDA3937_RS12250	0.57	-1.1
2,783,709	-		DDA3937_RS12250	0.57	+0.6
2,783,746	+		DDA3937_RS12250	0.59	+1.7
2,783,747	-		DDA3937_RS12250	0.60	-0.7
2,783,768	+		DDA3937_RS12250	0.61	-1.1
2,783,768	+		DDA3937_RS12250	0.61	-0.3
2,783,768	+		DDA3937_RS12250	0.61	-0.4
2,783,768	+		DDA3937_RS12250	0.61	-0.7
2,783,768	+		DDA3937_RS12250	0.61	+0.9
2,783,768	+		DDA3937_RS12250	0.61	-0.2
2,783,769	-		DDA3937_RS12250	0.61	-0.3
2,783,769	-		DDA3937_RS12250	0.61	-0.3
2,783,769	-		DDA3937_RS12250	0.61	+0.1
2,783,769	-		DDA3937_RS12250	0.61	+1.3
2,783,781	+		DDA3937_RS12250	0.62	-0.1
2,783,855	+		DDA3937_RS12250	0.66	-0.6
2,783,866	+		DDA3937_RS12250	0.67	-0.4
2,783,866	+		DDA3937_RS12250	0.67	+1.3
2,783,866	+		DDA3937_RS12250	0.67	-1.1
2,783,867	-		DDA3937_RS12250	0.67	+2.6
2,783,867	-		DDA3937_RS12250	0.67	+0.6
2,783,867	-		DDA3937_RS12250	0.67	-0.7
2,783,867	-		DDA3937_RS12250	0.67	-0.4
2,783,867	-		DDA3937_RS12250	0.67	-0.4
2,783,914	+		DDA3937_RS12250	0.70	+1.6
2,783,915	-		DDA3937_RS12250	0.70	-0.3
2,783,931	-		DDA3937_RS12250	0.71	+0.3
2,783,987	+				-0.7
2,784,037	+		DDA3937_RS12250	0.78	+1.2
2,784,037	+		DDA3937_RS12250	0.78	+1.1
2,784,037	+		DDA3937_RS12250	0.78	-0.4
2,784,038	-		DDA3937_RS12250	0.78	+0.7
2,784,051	+		DDA3937_RS12250	0.79	+0.2
2,784,051	+		DDA3937_RS12250	0.79	+0.3
2,784,051	+		DDA3937_RS12250	0.79	+0.6
2,784,051	+		DDA3937_RS12250	0.79	-0.2
2,784,051	+		DDA3937_RS12250	0.79	+0.9
2,784,051	+		DDA3937_RS12250	0.79	+3.5
2,784,051	+		DDA3937_RS12250	0.79	-0.7
2,784,051	+		DDA3937_RS12250	0.79	-0.7
2,784,051	+		DDA3937_RS12250	0.79	+0.5
2,784,052	-				-1.7
2,784,052	-		DDA3937_RS12250	0.79	+0.5
2,784,052	-		DDA3937_RS12250	0.79	-1.2
2,784,052	-		DDA3937_RS12250	0.79	-0.2
2,784,107	+		DDA3937_RS12250	0.83	-0.8
2,784,121	+		DDA3937_RS12250	0.84	-0.1
2,784,121	+		DDA3937_RS12250	0.84	-0.5
2,784,122	-		DDA3937_RS12250	0.84	-0.8
2,784,297	-				-0.5
2,784,297	-				+0.5
2,784,306	+				+0.9
2,784,306	+				-1.6
2,784,306	+				-2.1
2,784,306	+				+0.3
2,784,306	+				+1.3
2,784,306	+				+3.8
2,784,306	+				-1.8
2,784,307	-				-1.7
2,784,318	+				-0.6
2,784,318	+				+0.9
2,784,318	+				-1.7
2,784,318	+				-1.4
2,784,319	-				-0.7
2,784,319	-				-0.9
2,784,319	-				-0.3
2,784,322	+				-0.5
2,784,322	+				+0.1
2,784,322	+				+1.2
2,784,323	-				-1.1
2,784,343	+				-0.7
2,784,343	+				-0.4
2,784,354	+				-0.5
2,784,354	+				-0.1
2,784,354	+				-0.3
2,784,354	+				+0.1
2,784,354	+				+0.1
2,784,355	-				-0.0
2,784,357	+				-0.6
2,784,404	+				+0.2
2,784,405	-				-0.2
2,784,416	+				-0.7
2,784,422	+				-1.3
2,784,423	-				-0.3
2,784,439	-				-1.8
2,784,443	+				-0.7
2,784,444	-				+0.3
2,784,487	-				+0.7
2,784,543	+		DDA3937_RS12255	0.12	-0.5
2,784,544	-		DDA3937_RS12255	0.12	-0.4
2,784,544	-		DDA3937_RS12255	0.12	-0.2
2,784,556	-		DDA3937_RS12255	0.14	-0.4
2,784,608	+		DDA3937_RS12255	0.21	-0.1
2,784,613	+		DDA3937_RS12255	0.22	+2.0
2,784,614	-		DDA3937_RS12255	0.22	-1.9
2,784,701	+		DDA3937_RS12255	0.34	-0.7
2,784,701	+		DDA3937_RS12255	0.34	+0.7
2,784,701	+		DDA3937_RS12255	0.34	-1.0
2,784,702	-		DDA3937_RS12255	0.34	+0.6
2,784,702	-		DDA3937_RS12255	0.34	+1.4
2,784,702	-		DDA3937_RS12255	0.34	+0.0
2,784,717	-		DDA3937_RS12255	0.36	-0.1
2,784,782	+		DDA3937_RS12255	0.45	-0.7
2,784,782	+		DDA3937_RS12255	0.45	-0.4
2,784,783	-		DDA3937_RS12255	0.45	+1.5
2,784,783	-		DDA3937_RS12255	0.45	-0.4
2,784,800	-		DDA3937_RS12255	0.47	+0.5
2,784,822	+		DDA3937_RS12255	0.51	+0.8
2,784,823	-		DDA3937_RS12255	0.51	+1.8
2,784,828	+		DDA3937_RS12255	0.51	-1.4
2,784,828	+		DDA3937_RS12255	0.51	-0.9
2,784,829	-		DDA3937_RS12255	0.52	+0.5
2,784,829	-		DDA3937_RS12255	0.52	-2.3
2,784,857	+		DDA3937_RS12255	0.55	-0.6
2,784,857	+		DDA3937_RS12255	0.55	-1.3
2,784,858	-		DDA3937_RS12255	0.56	-2.3
2,784,872	-		DDA3937_RS12255	0.57	+0.5
2,785,045	+		DDA3937_RS12255	0.82	-0.1
2,785,045	+		DDA3937_RS12255	0.82	-0.3
2,785,045	+		DDA3937_RS12255	0.82	+0.2
2,785,045	+				-1.1
2,785,046	-		DDA3937_RS12255	0.82	-1.6
2,785,046	-		DDA3937_RS12255	0.82	-1.3
2,785,046	-		DDA3937_RS12255	0.82	-0.4
2,785,046	-		DDA3937_RS12255	0.82	-2.1
2,785,048	+		DDA3937_RS12255	0.82	+0.1
2,785,048	+		DDA3937_RS12255	0.82	-0.4
2,785,048	+		DDA3937_RS12255	0.82	-0.7
2,785,048	+		DDA3937_RS12255	0.82	+1.8
2,785,049	-		DDA3937_RS12255	0.82	+1.0
2,785,067	+		DDA3937_RS12255	0.85	-0.1
2,785,068	-		DDA3937_RS12255	0.85	-0.1
2,785,150	+				-0.6
2,785,150	+				-0.2
2,785,151	-				-0.7
2,785,151	-				-3.3
2,785,151	-				-1.0
2,785,192	+				-2.3
2,785,192	+				-0.5
2,785,193	-				-1.1
2,785,193	-				+0.2
2,785,196	+				+2.1
2,785,196	+				+0.2
2,785,197	-				+2.4
2,785,261	-				-0.2
2,785,373	+		DDA3937_RS12260	0.13	+0.2
2,785,373	+		DDA3937_RS12260	0.13	-0.7
2,785,374	-		DDA3937_RS12260	0.13	-0.3
2,785,374	-		DDA3937_RS12260	0.13	+0.1
2,785,374	-		DDA3937_RS12260	0.13	-1.4
2,785,374	-		DDA3937_RS12260	0.13	+0.2