Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS10180

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,294,978	+		DDA3937_RS10175	0.22	-2.0
2,294,979	-		DDA3937_RS10175	0.22	+0.4
2,294,980	+		DDA3937_RS10175	0.23	-0.9
2,294,980	+		DDA3937_RS10175	0.23	+1.4
2,294,981	-		DDA3937_RS10175	0.23	-0.1
2,294,985	-		DDA3937_RS10175	0.23	-0.1
2,295,004	-		DDA3937_RS10175	0.26	-2.6
2,295,053	-		DDA3937_RS10175	0.32	+0.4
2,295,122	+		DDA3937_RS10175	0.42	+0.3
2,295,123	-		DDA3937_RS10175	0.42	-0.8
2,295,151	+		DDA3937_RS10175	0.46	-2.0
2,295,151	+				-0.7
2,295,169	+		DDA3937_RS10175	0.48	-0.5
2,295,169	+		DDA3937_RS10175	0.48	+4.3
2,295,170	-		DDA3937_RS10175	0.48	+0.1
2,295,170	-		DDA3937_RS10175	0.48	+4.9
2,295,170	-		DDA3937_RS10175	0.48	+0.2
2,295,303	+		DDA3937_RS10175	0.66	-1.1
2,295,303	+		DDA3937_RS10175	0.66	-0.7
2,295,303	+		DDA3937_RS10175	0.66	-0.6
2,295,303	+		DDA3937_RS10175	0.66	+1.0
2,295,304	-		DDA3937_RS10175	0.66	-0.4
2,295,304	-		DDA3937_RS10175	0.66	-0.6
2,295,374	+		DDA3937_RS10175	0.76	-1.1
2,295,374	+		DDA3937_RS10175	0.76	+0.6
2,295,375	-		DDA3937_RS10175	0.76	+0.1
2,295,377	-		DDA3937_RS10175	0.76	-1.3
2,295,385	+		DDA3937_RS10175	0.77	-3.1
2,295,389	-		DDA3937_RS10175	0.78	+0.4
2,295,556	+				+0.1
2,295,629	-				-1.0
2,295,728	-		DDA3937_RS23425	0.59	+0.1
2,295,760	-		DDA3937_RS23425	0.80	-0.5
2,295,760	-		DDA3937_RS23425	0.80	-0.1
2,295,762	+		DDA3937_RS23425	0.81	+0.0
2,295,762	+		DDA3937_RS23425	0.81	-0.1
2,295,774	+		DDA3937_RS23425	0.89	+2.4
2,295,775	-				-0.3
2,295,780	+				+1.2
2,295,780	+				-1.0
2,295,781	-				-0.7
2,295,781	-				-1.1
2,295,783	+				-0.5
2,295,783	+				-1.1
2,295,783	+				+1.7
2,295,784	-				+1.1
2,295,817	+				+2.6
2,295,818	-				-1.0
2,295,866	+				-0.1
2,295,866	+				-1.6
2,295,866	+				-1.5
2,295,866	+				-1.1
2,295,866	+				+0.1
2,295,866	+				-1.1
2,295,866	+				+0.0
2,295,866	+				+0.5
2,295,867	-				-0.5
2,295,867	-				+1.1
2,295,913	+				+0.3
2,295,913	+				-1.0
2,295,913	+				+0.1
2,295,914	-				+0.4
2,295,931	+				-0.5
2,295,931	+				+0.6
2,295,932	-				-0.4
2,296,183	+				+0.9
2,296,183	+		DDA3937_RS10180	0.22	-0.6
2,296,183	+		DDA3937_RS10180	0.22	-0.1
2,296,183	+		DDA3937_RS10180	0.22	-0.1
2,296,183	+		DDA3937_RS10180	0.22	+0.4
2,296,184	-		DDA3937_RS10180	0.22	-0.7
2,296,184	-		DDA3937_RS10180	0.22	-1.1
2,296,239	+		DDA3937_RS10180	0.27	+0.6
2,296,379	+		DDA3937_RS10180	0.39	-1.0
2,296,528	+		DDA3937_RS10180	0.52	+1.3
2,296,528	+		DDA3937_RS10180	0.52	+0.5
2,296,528	+		DDA3937_RS10180	0.52	+0.9
2,296,528	+		DDA3937_RS10180	0.52	-0.4
2,296,528	+		DDA3937_RS10180	0.52	+0.3
2,296,528	+		DDA3937_RS10180	0.52	+0.4
2,296,529	-		DDA3937_RS10180	0.52	-0.7
2,296,529	-		DDA3937_RS10180	0.52	-1.1
2,296,529	-				-0.1
2,296,529	-		DDA3937_RS10180	0.52	-1.0
2,296,530	+		DDA3937_RS10180	0.52	-0.3
2,296,674	+		DDA3937_RS10180	0.65	-1.1
2,297,025	+				-0.3
2,297,025	+				-1.0
2,297,026	-				-0.6
2,297,026	-				+0.4
2,297,026	-				+0.9
2,297,043	+				-1.4
2,297,107	-				+0.2
2,297,107	-				-0.9
2,297,153	+				-0.6
2,297,153	+				+0.2
2,297,153	+				+0.1
2,297,154	-				-0.5
2,297,194	+		DDA3937_RS10185	0.11	+0.0
2,297,195	-		DDA3937_RS10185	0.11	+0.8
2,297,280	+		DDA3937_RS10185	0.19	+0.8
2,297,280	+		DDA3937_RS10185	0.19	+0.6
2,297,281	-				-1.2
2,297,281	-		DDA3937_RS10185	0.19	+0.2
2,297,284	+		DDA3937_RS10185	0.19	-0.7
2,297,285	-		DDA3937_RS10185	0.19	-1.4
2,297,285	-		DDA3937_RS10185	0.19	-0.4
2,297,306	+		DDA3937_RS10185	0.21	-2.7
2,297,314	+		DDA3937_RS10185	0.22	-0.0
2,297,314	+		DDA3937_RS10185	0.22	-2.2
2,297,314	+		DDA3937_RS10185	0.22	-0.3
2,297,326	+		DDA3937_RS10185	0.23	+1.7
2,297,326	+		DDA3937_RS10185	0.23	+0.3
2,297,385	+		DDA3937_RS10185	0.29	-0.6
2,297,408	-		DDA3937_RS10185	0.31	-1.5
2,297,498	+		DDA3937_RS10185	0.39	-2.0
2,297,498	+		DDA3937_RS10185	0.39	+0.6
2,297,498	+		DDA3937_RS10185	0.39	-2.0
2,297,499	-		DDA3937_RS10185	0.39	-0.2
2,297,499	-		DDA3937_RS10185	0.39	-1.0
2,297,551	+		DDA3937_RS10185	0.44	-1.0
2,297,552	-		DDA3937_RS10185	0.44	+0.6
2,297,552	-		DDA3937_RS10185	0.44	-0.5
2,297,629	-		DDA3937_RS10185	0.51	+0.6
2,297,640	+		DDA3937_RS10185	0.52	-0.4
2,297,641	-		DDA3937_RS10185	0.52	-1.3
2,297,725	+		DDA3937_RS10185	0.60	-1.1
2,297,725	+		DDA3937_RS10185	0.60	-0.1
2,297,726	-		DDA3937_RS10185	0.60	-1.5
2,297,726	-		DDA3937_RS10185	0.60	-0.2
2,297,726	-		DDA3937_RS10185	0.60	-1.3
2,297,773	+		DDA3937_RS10185	0.64	-2.6
2,297,773	+		DDA3937_RS10185	0.64	+0.2
2,297,774	-		DDA3937_RS10185	0.64	-0.9
2,297,776	+		DDA3937_RS10185	0.64	+1.2
2,297,776	+		DDA3937_RS10185	0.64	+0.1
2,297,776	+		DDA3937_RS10185	0.64	-1.0
2,297,776	+		DDA3937_RS10185	0.64	+0.1
2,297,776	+		DDA3937_RS10185	0.64	-0.8
2,297,830	+		DDA3937_RS10185	0.69	-0.4
2,297,830	+		DDA3937_RS10185	0.69	-0.2
2,297,831	-		DDA3937_RS10185	0.69	-1.4
2,297,831	-		DDA3937_RS10185	0.69	-1.9
2,297,870	-		DDA3937_RS10185	0.73	-1.2
2,297,895	+		DDA3937_RS10185	0.75	+2.2
2,297,895	+		DDA3937_RS10185	0.75	-0.2
2,297,941	+		DDA3937_RS10185	0.79	+0.4
2,297,941	+				-0.7
2,297,942	-		DDA3937_RS10185	0.79	-0.2
2,297,942	-		DDA3937_RS10185	0.79	-0.1
2,297,966	-		DDA3937_RS10185	0.82	+0.9
2,297,973	+		DDA3937_RS10185	0.82	-0.2
2,297,974	-		DDA3937_RS10185	0.82	-0.3
2,297,974	-		DDA3937_RS10185	0.82	-1.7
2,297,978	-		DDA3937_RS10185	0.83	-2.0
2,297,978	-		DDA3937_RS10185	0.83	-1.3