Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS09390

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,116,500	-		DDA3937_RS09385	0.61	-1.1
2,116,500	-		DDA3937_RS09385	0.61	+0.2
2,116,500	-		DDA3937_RS09385	0.61	-0.2
2,116,500	-		DDA3937_RS09385	0.61	-0.8
2,116,500	-		DDA3937_RS09385	0.61	-0.0
2,116,500	-		DDA3937_RS09385	0.61	-1.6
2,116,544	-		DDA3937_RS09385	0.64	-0.7
2,116,544	-		DDA3937_RS09385	0.64	+1.2
2,116,624	+		DDA3937_RS09385	0.70	-0.2
2,116,625	-		DDA3937_RS09385	0.70	-1.8
2,116,625	-		DDA3937_RS09385	0.70	+1.2
2,116,625	-		DDA3937_RS09385	0.70	-0.7
2,116,625	-		DDA3937_RS09385	0.70	+0.7
2,116,625	-		DDA3937_RS09385	0.70	-0.6
2,116,625	-		DDA3937_RS09385	0.70	+0.5
2,116,625	-		DDA3937_RS09385	0.70	-0.8
2,116,654	+		DDA3937_RS09385	0.72	-0.3
2,116,680	+		DDA3937_RS09385	0.74	+0.1
2,116,681	-		DDA3937_RS09385	0.74	-0.6
2,116,817	+				-1.7
2,116,818	-		DDA3937_RS09385	0.84	+0.1
2,116,846	+		DDA3937_RS09385	0.86	-0.7
2,116,846	+		DDA3937_RS09385	0.86	-0.5
2,116,846	+		DDA3937_RS09385	0.86	-0.9
2,116,846	+		DDA3937_RS09385	0.86	-0.5
2,116,846	+		DDA3937_RS09385	0.86	+0.0
2,116,847	-		DDA3937_RS09385	0.86	+2.5
2,116,847	-		DDA3937_RS09385	0.86	-1.5
2,116,847	-		DDA3937_RS09385	0.86	-0.7
2,116,847	-		DDA3937_RS09385	0.86	-0.7
2,117,040	-				-0.2
2,117,049	-				+1.4
2,117,049	-				-0.1
2,117,058	+				-0.7
2,117,058	+				+1.2
2,117,058	+				-0.9
2,117,058	+				-1.7
2,117,058	+				+1.9
2,117,059	-				-2.1
2,117,059	-				-0.6
2,117,059	-				+0.5
2,117,059	-				-2.4
2,117,059	-				-2.1
2,117,091	+				-0.4
2,117,093	+				-1.0
2,117,093	+				-0.6
2,117,094	-				-0.6
2,117,094	-				-1.1
2,117,094	-				-1.7
2,117,094	-				-0.3
2,117,129	+				-0.6
2,117,132	-				-0.6
2,117,136	+				-0.4
2,117,231	+				+0.1
2,117,231	+				-0.2
2,117,232	-				-0.7
2,117,234	+				+1.3
2,117,234	+				-0.9
2,117,235	-				-1.9
2,117,241	-				-0.2
2,117,241	-				+0.9
2,117,270	+				-2.3
2,117,270	+				-1.6
2,117,271	-				-0.1
2,117,271	-				-0.3
2,117,300	+				-0.7
2,117,344	-				+0.7
2,117,626	+		DDA3937_RS09390	0.27	-0.9
2,117,635	+		DDA3937_RS09390	0.28	-0.4
2,117,635	+		DDA3937_RS09390	0.28	-0.9
2,117,636	-		DDA3937_RS09390	0.28	-0.3
2,117,636	-		DDA3937_RS09390	0.28	-0.7
2,117,804	+		DDA3937_RS09390	0.43	+0.2
2,117,804	+		DDA3937_RS09390	0.43	+0.2
2,117,804	+		DDA3937_RS09390	0.43	+2.9
2,117,804	+		DDA3937_RS09390	0.43	-0.8
2,117,805	-		DDA3937_RS09390	0.43	+0.9
2,117,809	-		DDA3937_RS09390	0.44	-1.6
2,117,835	+		DDA3937_RS09390	0.46	-0.6
2,117,835	+		DDA3937_RS09390	0.46	-1.2
2,117,835	+		DDA3937_RS09390	0.46	+1.0
2,117,835	+		DDA3937_RS09390	0.46	-0.7
2,117,836	-		DDA3937_RS09390	0.46	-1.1
2,117,836	-		DDA3937_RS09390	0.46	+0.5
2,117,836	-		DDA3937_RS09390	0.46	+1.1
2,117,963	+		DDA3937_RS09390	0.57	-1.1
2,117,967	+		DDA3937_RS09390	0.58	+0.1
2,117,968	-		DDA3937_RS09390	0.58	-0.7
2,118,052	-		DDA3937_RS09390	0.65	+0.1
2,118,052	-		DDA3937_RS09390	0.65	-2.2
2,118,074	-				-1.4
2,118,094	+		DDA3937_RS09390	0.69	-0.9
2,118,095	-		DDA3937_RS09390	0.69	+0.4
2,118,095	-		DDA3937_RS09390	0.69	+0.3
2,118,095	-		DDA3937_RS09390	0.69	-0.2
2,118,095	-		DDA3937_RS09390	0.69	+0.2
2,118,120	+		DDA3937_RS09390	0.71	-0.3
2,118,169	+		DDA3937_RS09390	0.76	-0.9
2,118,170	-		DDA3937_RS09390	0.76	-2.4
2,118,170	-		DDA3937_RS09390	0.76	-0.7
2,118,173	-		DDA3937_RS09390	0.76	+0.8
2,118,249	-		DDA3937_RS09390	0.83	-2.0
2,118,379	+				+2.2
2,118,379	+				-1.1
2,118,379	+				-0.8
2,118,380	-				-1.1
2,118,385	+				-0.7
2,118,385	+				-0.3
2,118,385	+				-0.5
2,118,385	+				+0.6
2,118,386	-				-0.6
2,118,386	-				+0.4
2,118,386	-				-2.1
2,118,386	-				-0.7
2,118,386	-				-2.1
2,118,386	-				-0.6
2,118,386	-				-0.7
2,118,547	+				+0.7
2,118,548	-				-0.4
2,118,604	+		DDA3937_RS09395	0.19	-1.4
2,118,773	+		DDA3937_RS09395	0.46	-0.4
2,118,785	+		DDA3937_RS09395	0.48	+0.1
2,118,785	+		DDA3937_RS09395	0.48	-1.4
2,118,785	+		DDA3937_RS09395	0.48	-0.6
2,118,786	-		DDA3937_RS09395	0.48	-0.7
2,118,788	-		DDA3937_RS09395	0.48	-1.1
2,118,788	-		DDA3937_RS09395	0.48	-0.5
2,118,788	-		DDA3937_RS09395	0.48	-1.0
2,118,788	-		DDA3937_RS09395	0.48	+0.7
2,118,840	+		DDA3937_RS09395	0.57	-0.2
2,118,841	-		DDA3937_RS09395	0.57	-1.3
2,118,860	-		DDA3937_RS09395	0.60	-1.3
2,118,860	-		DDA3937_RS09395	0.60	+0.4
2,118,860	-		DDA3937_RS09395	0.60	-1.6
2,118,922	-		DDA3937_RS09395	0.70	+0.2
2,118,977	-		DDA3937_RS09395	0.79	-0.1
2,119,099	-				-0.9
2,119,133	+				-0.9
2,119,192	+				-1.8
2,119,197	-				-0.1
2,119,197	-				-1.7
2,119,211	-				+0.3
2,119,224	+				+0.6
2,119,230	+				-0.3
2,119,231	-				+0.1
2,119,231	-				+1.1
2,119,231	-				-1.7
2,119,233	-				+0.0
2,119,233	-				-0.6
2,119,233	-				-2.9
2,119,254	+				+0.5
2,119,278	-				-1.5
2,119,311	+				+0.7
2,119,317	+				+2.2
2,119,317	+				+0.4
2,119,319	+				-1.3
2,119,349	+				+4.6
2,119,361	+				+0.9
2,119,372	+				+1.6
2,119,391	+				+0.1
2,119,391	+				+1.4
2,119,391	+				+1.2
2,119,391	+				+1.7
2,119,391	+				+1.7
2,119,391	+				+0.2
2,119,391	+				-0.7
2,119,391	+				+1.1
2,119,391	+				+1.4
2,119,391	+				-1.4
2,119,391	+				+2.2
2,119,391	+				-0.2
2,119,391	+				+0.6
2,119,391	+				-0.8
2,119,391	+				+1.6
2,119,391	+				-0.3
2,119,391	+				+0.1
2,119,392	-				-0.5
2,119,392	-				+0.4
2,119,392	-				-0.1
2,119,392	-				-0.4
2,119,392	-				-0.8
2,119,392	-				-1.4
2,119,392	-				-0.4
2,119,392	-				-0.2
2,119,392	-				+0.7
2,119,392	-				-1.0
2,119,392	-				+1.1
2,119,392	-				-0.5
2,119,392	-				-0.9
2,119,392	-				-0.3
2,119,392	-				-0.7
2,119,392	-				-1.1
2,119,392	-				-1.2
2,119,392	-				-0.9
2,119,392	-				-1.7
2,119,392	-				-0.2
2,119,392	-				+0.1
2,119,392	-				+0.9
2,119,392	-				-1.6
2,119,392	-				-2.3
2,119,392	-				-0.4
2,119,393	+				-0.8
2,119,393	+				+0.1
2,119,393	+				-0.5
2,119,394	-				+0.2
2,119,394	-				+1.8
2,119,394	-				+0.8
2,119,394	-				+0.2
2,119,394	-				-1.4
2,119,394	-				-0.5
2,119,397	+				+0.5
2,119,397	+				+0.5
2,119,397	+				+0.7
2,119,397	+				+1.5
2,119,398	-				+0.2
2,119,398	-				+1.4
2,119,398	-				+0.4
2,119,398	-				-0.8
2,119,402	+				+0.1
2,119,415	+				+0.1
2,119,415	+				-1.5
2,119,415	+				-0.2
2,119,416	-				-1.1
2,119,416	-				+3.2
2,119,433	+				-1.1
2,119,433	+				-0.7
2,119,441	+				-3.1
2,119,441	+				-2.6
2,119,441	+				-0.4
2,119,441	+				+0.5