Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS08790 and DDA3937_RS08795 are separated by 71 nucleotides DDA3937_RS08795 and DDA3937_RS08800 are separated by 238 nucleotides DDA3937_RS08800 and DDA3937_RS08805 overlap by 4 nucleotides
DDA3937_RS08790: DDA3937_RS08790 - phosphatase PAP2 family protein, at 1,986,953 to 1,988,230
_RS08790
DDA3937_RS08795: DDA3937_RS08795 - DUF1349 domain-containing protein, at 1,988,302 to 1,989,999
_RS08795
DDA3937_RS08800: DDA3937_RS08800 - glutamine ABC transporter ATP-binding protein GlnQ, at 1,990,238 to 1,990,960
_RS08800
DDA3937_RS08805: DDA3937_RS08805 - glutamine ABC transporter permease GlnP, at 1,990,957 to 1,991,616
_RS08805
Position (kb) 1988
1989
1990 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 1987.325 kb on - strand, within DDA3937_RS08790 at 1987.342 kb on + strand, within DDA3937_RS08790 at 1987.342 kb on + strand, within DDA3937_RS08790 at 1987.342 kb on + strand, within DDA3937_RS08790 at 1987.342 kb on + strand, within DDA3937_RS08790 at 1987.342 kb on + strand, within DDA3937_RS08790 at 1987.343 kb on - strand, within DDA3937_RS08790 at 1987.343 kb on - strand, within DDA3937_RS08790 at 1987.343 kb on - strand, within DDA3937_RS08790 at 1987.407 kb on - strand, within DDA3937_RS08790 at 1987.482 kb on + strand, within DDA3937_RS08790 at 1987.482 kb on + strand, within DDA3937_RS08790 at 1987.482 kb on + strand, within DDA3937_RS08790 at 1987.482 kb on + strand, within DDA3937_RS08790 at 1987.483 kb on - strand, within DDA3937_RS08790 at 1987.483 kb on - strand, within DDA3937_RS08790 at 1987.483 kb on - strand, within DDA3937_RS08790 at 1987.483 kb on - strand, within DDA3937_RS08790 at 1987.483 kb on - strand, within DDA3937_RS08790 at 1987.522 kb on + strand, within DDA3937_RS08790 at 1987.523 kb on - strand, within DDA3937_RS08790 at 1987.523 kb on - strand, within DDA3937_RS08790 at 1987.583 kb on - strand, within DDA3937_RS08790 at 1987.583 kb on - strand, within DDA3937_RS08790 at 1987.628 kb on + strand, within DDA3937_RS08790 at 1987.628 kb on + strand, within DDA3937_RS08790 at 1987.628 kb on + strand, within DDA3937_RS08790 at 1987.628 kb on + strand, within DDA3937_RS08790 at 1987.628 kb on + strand, within DDA3937_RS08790 at 1987.628 kb on + strand, within DDA3937_RS08790 at 1987.628 kb on + strand, within DDA3937_RS08790 at 1987.628 kb on + strand, within DDA3937_RS08790 at 1987.628 kb on + strand, within DDA3937_RS08790 at 1987.628 kb on + strand, within DDA3937_RS08790 at 1987.629 kb on - strand, within DDA3937_RS08790 at 1987.629 kb on - strand, within DDA3937_RS08790 at 1987.629 kb on - strand, within DDA3937_RS08790 at 1987.629 kb on - strand, within DDA3937_RS08790 at 1987.629 kb on - strand, within DDA3937_RS08790 at 1987.629 kb on - strand, within DDA3937_RS08790 at 1987.629 kb on - strand, within DDA3937_RS08790 at 1987.630 kb on + strand, within DDA3937_RS08790 at 1987.630 kb on + strand, within DDA3937_RS08790 at 1987.630 kb on + strand, within DDA3937_RS08790 at 1987.631 kb on - strand, within DDA3937_RS08790 at 1987.631 kb on - strand, within DDA3937_RS08790 at 1987.631 kb on - strand, within DDA3937_RS08790 at 1987.677 kb on - strand, within DDA3937_RS08790 at 1987.678 kb on + strand, within DDA3937_RS08790 at 1987.678 kb on + strand, within DDA3937_RS08790 at 1987.776 kb on + strand, within DDA3937_RS08790 at 1987.776 kb on + strand, within DDA3937_RS08790 at 1987.948 kb on + strand, within DDA3937_RS08790 at 1987.948 kb on + strand, within DDA3937_RS08790 at 1987.961 kb on + strand, within DDA3937_RS08790 at 1987.962 kb on - strand, within DDA3937_RS08790 at 1987.988 kb on + strand, within DDA3937_RS08790 at 1987.994 kb on + strand, within DDA3937_RS08790 at 1987.995 kb on - strand, within DDA3937_RS08790 at 1988.006 kb on + strand, within DDA3937_RS08790 at 1988.006 kb on + strand, within DDA3937_RS08790 at 1988.007 kb on - strand, within DDA3937_RS08790 at 1988.007 kb on - strand, within DDA3937_RS08790 at 1988.007 kb on - strand, within DDA3937_RS08790 at 1988.007 kb on - strand, within DDA3937_RS08790 at 1988.007 kb on - strand, within DDA3937_RS08790 at 1988.007 kb on - strand, within DDA3937_RS08790 at 1988.007 kb on - strand, within DDA3937_RS08790 at 1988.026 kb on - strand, within DDA3937_RS08790 at 1988.028 kb on + strand, within DDA3937_RS08790 at 1988.028 kb on + strand, within DDA3937_RS08790 at 1988.029 kb on - strand, within DDA3937_RS08790 at 1988.124 kb on + strand at 1988.228 kb on + strand at 1988.228 kb on + strand at 1988.229 kb on - strand at 1988.229 kb on - strand at 1988.229 kb on - strand at 1988.249 kb on + strand at 1988.250 kb on - strand at 1988.250 kb on - strand at 1988.250 kb on - strand at 1988.250 kb on - strand at 1988.282 kb on + strand at 1988.283 kb on - strand at 1988.283 kb on - strand at 1988.310 kb on + strand at 1988.378 kb on + strand at 1988.378 kb on + strand at 1988.378 kb on + strand at 1988.378 kb on + strand at 1988.379 kb on - strand at 1988.379 kb on - strand at 1988.379 kb on - strand at 1988.379 kb on - strand at 1988.379 kb on - strand at 1988.379 kb on - strand at 1988.457 kb on + strand at 1988.457 kb on + strand at 1988.458 kb on - strand at 1988.458 kb on - strand at 1988.458 kb on - strand at 1988.594 kb on + strand, within DDA3937_RS08795 at 1988.607 kb on + strand, within DDA3937_RS08795 at 1988.608 kb on - strand, within DDA3937_RS08795 at 1988.609 kb on + strand, within DDA3937_RS08795 at 1988.609 kb on + strand, within DDA3937_RS08795 at 1988.609 kb on + strand, within DDA3937_RS08795 at 1988.609 kb on + strand, within DDA3937_RS08795 at 1988.610 kb on - strand, within DDA3937_RS08795 at 1988.610 kb on - strand, within DDA3937_RS08795 at 1988.610 kb on - strand, within DDA3937_RS08795 at 1988.639 kb on - strand, within DDA3937_RS08795 at 1988.639 kb on - strand, within DDA3937_RS08795 at 1988.670 kb on + strand, within DDA3937_RS08795 at 1988.670 kb on + strand, within DDA3937_RS08795 at 1988.672 kb on + strand, within DDA3937_RS08795 at 1988.673 kb on - strand, within DDA3937_RS08795 at 1988.726 kb on + strand, within DDA3937_RS08795 at 1988.760 kb on + strand, within DDA3937_RS08795 at 1988.926 kb on - strand, within DDA3937_RS08795 at 1988.927 kb on + strand, within DDA3937_RS08795 at 1988.927 kb on + strand, within DDA3937_RS08795 at 1989.021 kb on - strand, within DDA3937_RS08795 at 1989.038 kb on + strand, within DDA3937_RS08795 at 1989.038 kb on + strand, within DDA3937_RS08795 at 1989.039 kb on - strand, within DDA3937_RS08795 at 1989.059 kb on + strand, within DDA3937_RS08795 at 1989.059 kb on + strand, within DDA3937_RS08795 at 1989.060 kb on - strand, within DDA3937_RS08795 at 1989.060 kb on - strand at 1989.092 kb on + strand, within DDA3937_RS08795 at 1989.201 kb on + strand, within DDA3937_RS08795 at 1989.216 kb on - strand, within DDA3937_RS08795 at 1989.250 kb on - strand, within DDA3937_RS08795 at 1989.326 kb on + strand, within DDA3937_RS08795 at 1989.327 kb on - strand, within DDA3937_RS08795 at 1989.374 kb on + strand, within DDA3937_RS08795 at 1989.519 kb on + strand, within DDA3937_RS08795 at 1989.520 kb on - strand, within DDA3937_RS08795 at 1989.561 kb on + strand, within DDA3937_RS08795 at 1989.626 kb on + strand, within DDA3937_RS08795 at 1989.627 kb on - strand, within DDA3937_RS08795 at 1989.627 kb on - strand, within DDA3937_RS08795 at 1989.654 kb on - strand, within DDA3937_RS08795 at 1989.702 kb on - strand, within DDA3937_RS08795 at 1989.702 kb on - strand, within DDA3937_RS08795 at 1989.702 kb on - strand, within DDA3937_RS08795 at 1989.742 kb on - strand, within DDA3937_RS08795 at 1989.742 kb on - strand, within DDA3937_RS08795 at 1989.742 kb on - strand, within DDA3937_RS08795 at 1989.821 kb on + strand, within DDA3937_RS08795 at 1990.078 kb on + strand at 1990.078 kb on + strand at 1990.079 kb on - strand at 1990.079 kb on - strand at 1990.080 kb on + strand at 1990.080 kb on + strand at 1990.081 kb on - strand at 1990.115 kb on + strand at 1990.115 kb on + strand at 1990.116 kb on - strand at 1990.116 kb on - strand at 1990.116 kb on - strand at 1990.495 kb on + strand, within DDA3937_RS08800 at 1990.495 kb on + strand, within DDA3937_RS08800 at 1990.496 kb on - strand at 1990.496 kb on - strand, within DDA3937_RS08800 at 1990.646 kb on + strand, within DDA3937_RS08800 at 1990.701 kb on + strand, within DDA3937_RS08800 at 1990.702 kb on - strand, within DDA3937_RS08800 at 1990.871 kb on + strand, within DDA3937_RS08800 at 1990.871 kb on + strand, within DDA3937_RS08800 at 1990.872 kb on - strand, within DDA3937_RS08800 at 1990.872 kb on - strand, within DDA3937_RS08800 at 1990.874 kb on + strand, within DDA3937_RS08800 at 1990.875 kb on - strand, within DDA3937_RS08800 at 1990.875 kb on - strand, within DDA3937_RS08800 at 1990.875 kb on - strand, within DDA3937_RS08800 at 1990.875 kb on - strand, within DDA3937_RS08800 at 1990.875 kb on - strand, within DDA3937_RS08800 at 1990.875 kb on - strand, within DDA3937_RS08800 at 1990.929 kb on + strand at 1990.960 kb on + strand at 1990.961 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 1,987,325 - DDA3937_RS08790 0.29 -0.5 1,987,342 + DDA3937_RS08790 0.30 +1.2 1,987,342 + DDA3937_RS08790 0.30 -0.4 1,987,342 + DDA3937_RS08790 0.30 +3.0 1,987,342 + DDA3937_RS08790 0.30 +0.4 1,987,342 + DDA3937_RS08790 0.30 -0.1 1,987,343 - DDA3937_RS08790 0.31 -0.1 1,987,343 - DDA3937_RS08790 0.31 +0.3 1,987,343 - DDA3937_RS08790 0.31 -0.4 1,987,407 - DDA3937_RS08790 0.36 -1.1 1,987,482 + DDA3937_RS08790 0.41 -0.6 1,987,482 + DDA3937_RS08790 0.41 -1.6 1,987,482 + DDA3937_RS08790 0.41 -0.2 1,987,482 + DDA3937_RS08790 0.41 +1.2 1,987,483 - DDA3937_RS08790 0.41 -0.1 1,987,483 - DDA3937_RS08790 0.41 -1.6 1,987,483 - DDA3937_RS08790 0.41 +0.9 1,987,483 - DDA3937_RS08790 0.41 -1.9 1,987,483 - DDA3937_RS08790 0.41 +0.2 1,987,522 + DDA3937_RS08790 0.45 -0.6 1,987,523 - DDA3937_RS08790 0.45 -1.0 1,987,523 - DDA3937_RS08790 0.45 -1.2 1,987,583 - DDA3937_RS08790 0.49 -0.2 1,987,583 - DDA3937_RS08790 0.49 -0.5 1,987,628 + DDA3937_RS08790 0.53 -0.3 1,987,628 + DDA3937_RS08790 0.53 -1.2 1,987,628 + DDA3937_RS08790 0.53 -0.7 1,987,628 + DDA3937_RS08790 0.53 -0.2 1,987,628 + DDA3937_RS08790 0.53 -1.5 1,987,628 + DDA3937_RS08790 0.53 +0.1 1,987,628 + DDA3937_RS08790 0.53 +0.3 1,987,628 + DDA3937_RS08790 0.53 +0.9 1,987,628 + DDA3937_RS08790 0.53 -2.4 1,987,628 + DDA3937_RS08790 0.53 -0.1 1,987,629 - DDA3937_RS08790 0.53 +0.1 1,987,629 - DDA3937_RS08790 0.53 -2.2 1,987,629 - DDA3937_RS08790 0.53 -0.8 1,987,629 - DDA3937_RS08790 0.53 -0.9 1,987,629 - DDA3937_RS08790 0.53 +0.5 1,987,629 - DDA3937_RS08790 0.53 -0.4 1,987,629 - DDA3937_RS08790 0.53 -1.6 1,987,630 + DDA3937_RS08790 0.53 +0.1 1,987,630 + DDA3937_RS08790 0.53 -0.3 1,987,630 + DDA3937_RS08790 0.53 -1.1 1,987,631 - DDA3937_RS08790 0.53 -0.7 1,987,631 - DDA3937_RS08790 0.53 -0.9 1,987,631 - DDA3937_RS08790 0.53 -0.4 1,987,677 - DDA3937_RS08790 0.57 -0.8 1,987,678 + DDA3937_RS08790 0.57 -0.4 1,987,678 + DDA3937_RS08790 0.57 -1.4 1,987,776 + DDA3937_RS08790 0.64 -0.1 1,987,776 + DDA3937_RS08790 0.64 +0.6 1,987,948 + DDA3937_RS08790 0.78 -0.4 1,987,948 + DDA3937_RS08790 0.78 -0.1 1,987,961 + DDA3937_RS08790 0.79 +0.4 1,987,962 - DDA3937_RS08790 0.79 +0.3 1,987,988 + DDA3937_RS08790 0.81 -0.5 1,987,994 + DDA3937_RS08790 0.81 -0.2 1,987,995 - DDA3937_RS08790 0.82 -0.4 1,988,006 + DDA3937_RS08790 0.82 -0.2 1,988,006 + DDA3937_RS08790 0.82 +0.9 1,988,007 - DDA3937_RS08790 0.82 -0.3 1,988,007 - DDA3937_RS08790 0.82 -0.2 1,988,007 - DDA3937_RS08790 0.82 +0.0 1,988,007 - DDA3937_RS08790 0.82 -0.1 1,988,007 - DDA3937_RS08790 0.82 -0.8 1,988,007 - DDA3937_RS08790 0.82 -1.1 1,988,007 - DDA3937_RS08790 0.82 -0.6 1,988,026 - DDA3937_RS08790 0.84 -1.0 1,988,028 + DDA3937_RS08790 0.84 +0.1 1,988,028 + DDA3937_RS08790 0.84 +0.2 1,988,029 - DDA3937_RS08790 0.84 +0.9 1,988,124 + -0.6 1,988,228 + -2.1 1,988,228 + -1.0 1,988,229 - +0.9 1,988,229 - -0.3 1,988,229 - -0.9 1,988,249 + +0.6 1,988,250 - -0.4 1,988,250 - -0.9 1,988,250 - -0.9 1,988,250 - -0.7 1,988,282 + +0.9 1,988,283 - +1.4 1,988,283 - +0.5 1,988,310 + -1.4 1,988,378 + -0.5 1,988,378 + -0.6 1,988,378 + -2.7 1,988,378 + -1.6 1,988,379 - -0.5 1,988,379 - -0.6 1,988,379 - +1.1 1,988,379 - -0.3 1,988,379 - -1.2 1,988,379 - +6.7 1,988,457 + -0.5 1,988,457 + -0.5 1,988,458 - +0.2 1,988,458 - -0.5 1,988,458 - -1.3 1,988,594 + DDA3937_RS08795 0.17 -2.1 1,988,607 + DDA3937_RS08795 0.18 -1.1 1,988,608 - DDA3937_RS08795 0.18 -0.1 1,988,609 + DDA3937_RS08795 0.18 -1.2 1,988,609 + DDA3937_RS08795 0.18 -0.3 1,988,609 + DDA3937_RS08795 0.18 -1.6 1,988,609 + DDA3937_RS08795 0.18 +0.2 1,988,610 - DDA3937_RS08795 0.18 +1.0 1,988,610 - DDA3937_RS08795 0.18 -0.1 1,988,610 - DDA3937_RS08795 0.18 -1.1 1,988,639 - DDA3937_RS08795 0.20 -0.6 1,988,639 - DDA3937_RS08795 0.20 -0.6 1,988,670 + DDA3937_RS08795 0.22 +0.7 1,988,670 + DDA3937_RS08795 0.22 -0.3 1,988,672 + DDA3937_RS08795 0.22 +0.7 1,988,673 - DDA3937_RS08795 0.22 -1.9 1,988,726 + DDA3937_RS08795 0.25 -0.4 1,988,760 + DDA3937_RS08795 0.27 -0.4 1,988,926 - DDA3937_RS08795 0.37 +0.0 1,988,927 + DDA3937_RS08795 0.37 -1.8 1,988,927 + DDA3937_RS08795 0.37 +0.6 1,989,021 - DDA3937_RS08795 0.42 +0.9 1,989,038 + DDA3937_RS08795 0.43 -0.7 1,989,038 + DDA3937_RS08795 0.43 -0.5 1,989,039 - DDA3937_RS08795 0.43 +0.9 1,989,059 + DDA3937_RS08795 0.45 -0.6 1,989,059 + DDA3937_RS08795 0.45 +0.0 1,989,060 - DDA3937_RS08795 0.45 -2.2 1,989,060 - -1.4 1,989,092 + DDA3937_RS08795 0.47 -1.2 1,989,201 + DDA3937_RS08795 0.53 -0.1 1,989,216 - DDA3937_RS08795 0.54 -0.6 1,989,250 - DDA3937_RS08795 0.56 -0.6 1,989,326 + DDA3937_RS08795 0.60 +0.3 1,989,327 - DDA3937_RS08795 0.60 +0.4 1,989,374 + DDA3937_RS08795 0.63 +2.3 1,989,519 + DDA3937_RS08795 0.72 +0.0 1,989,520 - DDA3937_RS08795 0.72 -1.9 1,989,561 + DDA3937_RS08795 0.74 -0.6 1,989,626 + DDA3937_RS08795 0.78 -1.1 1,989,627 - DDA3937_RS08795 0.78 -0.3 1,989,627 - DDA3937_RS08795 0.78 +1.9 1,989,654 - DDA3937_RS08795 0.80 -1.7 1,989,702 - DDA3937_RS08795 0.82 -0.6 1,989,702 - DDA3937_RS08795 0.82 -1.0 1,989,702 - DDA3937_RS08795 0.82 -0.6 1,989,742 - DDA3937_RS08795 0.85 +0.5 1,989,742 - DDA3937_RS08795 0.85 +0.4 1,989,742 - DDA3937_RS08795 0.85 -0.7 1,989,821 + DDA3937_RS08795 0.89 +0.1 1,990,078 + -0.2 1,990,078 + -0.1 1,990,079 - -0.3 1,990,079 - -0.2 1,990,080 + +0.2 1,990,080 + -0.4 1,990,081 - -1.9 1,990,115 + +1.8 1,990,115 + -1.9 1,990,116 - -0.5 1,990,116 - -0.4 1,990,116 - +0.5 1,990,495 + DDA3937_RS08800 0.36 -0.4 1,990,495 + DDA3937_RS08800 0.36 +1.5 1,990,496 - +0.9 1,990,496 - DDA3937_RS08800 0.36 -1.4 1,990,646 + DDA3937_RS08800 0.56 -2.5 1,990,701 + DDA3937_RS08800 0.64 -1.7 1,990,702 - DDA3937_RS08800 0.64 -0.5 1,990,871 + DDA3937_RS08800 0.88 +0.5 1,990,871 + DDA3937_RS08800 0.88 +3.0 1,990,872 - DDA3937_RS08800 0.88 -1.2 1,990,872 - DDA3937_RS08800 0.88 -0.8 1,990,874 + DDA3937_RS08800 0.88 +0.9 1,990,875 - DDA3937_RS08800 0.88 -0.3 1,990,875 - DDA3937_RS08800 0.88 -0.2 1,990,875 - DDA3937_RS08800 0.88 -0.4 1,990,875 - DDA3937_RS08800 0.88 -0.3 1,990,875 - DDA3937_RS08800 0.88 +1.5 1,990,875 - DDA3937_RS08800 0.88 -2.1 1,990,929 + +0.4 1,990,960 + -0.3 1,990,961 - -0.3
Or see this region's nucleotide sequence