Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS08445

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,907,282	+				+0.1
1,907,283	-				+1.2
1,907,292	+				-0.5
1,907,293	-				-1.5
1,907,305	+				-1.4
1,907,305	+				+1.5
1,907,306	-				-1.0
1,907,306	-				-1.0
1,907,307	+				-1.2
1,907,307	+				-0.2
1,907,307	+				-1.0
1,907,308	-				-0.5
1,907,308	-				+2.0
1,907,308	-				-1.9
1,907,308	-				+0.5
1,907,382	-		DDA3937_RS08435	0.66	-1.6
1,907,465	+				-1.4
1,907,465	+				+1.0
1,907,465	+				-1.6
1,907,465	+				+0.1
1,907,466	-				-2.2
1,907,466	-				-0.0
1,907,480	+				-1.4
1,907,480	+				+0.3
1,907,480	+				-0.5
1,907,480	+				+0.1
1,907,481	-				-0.1
1,907,481	-				+0.2
1,907,481	-				-0.0
1,907,502	+				-0.0
1,907,502	+				-1.9
1,907,502	+				-1.4
1,907,503	-				-0.0
1,907,503	-				-0.0
1,907,503	-				-0.3
1,907,507	+				-0.5
1,907,565	+				-0.9
1,907,565	+				-1.0
1,907,565	+				+1.5
1,907,571	+				-0.4
1,907,608	-				-2.3
1,907,744	+				-0.7
1,907,860	+				+0.2
1,907,897	-		DDA3937_RS08440	0.16	+1.1
1,907,897	-		DDA3937_RS08440	0.16	-1.2
1,907,940	+		DDA3937_RS08440	0.28	-0.4
1,907,940	+		DDA3937_RS08440	0.28	-2.4
1,907,941	-		DDA3937_RS08440	0.28	-1.3
1,907,941	-		DDA3937_RS08440	0.28	-0.9
1,907,941	-		DDA3937_RS08440	0.28	-0.2
1,907,985	+		DDA3937_RS08440	0.41	-0.4
1,907,986	-		DDA3937_RS08440	0.41	-0.4
1,907,986	-		DDA3937_RS08440	0.41	+1.5
1,908,019	-		DDA3937_RS08440	0.51	-1.1
1,908,037	+		DDA3937_RS08440	0.56	+0.2
1,908,124	+		DDA3937_RS08440	0.81	-0.8
1,908,160	-				+0.6
1,908,235	-				-1.9
1,908,339	+				-0.5
1,908,342	+				-1.2
1,908,363	+				+0.2
1,908,364	-				-2.2
1,908,472	+				-0.6
1,908,473	-				-0.2
1,908,473	-				-0.1
1,908,550	+		DDA3937_RS08445	0.12	-0.6
1,908,550	+		DDA3937_RS08445	0.12	-2.0
1,908,551	-		DDA3937_RS08445	0.12	-1.6
1,908,551	-		DDA3937_RS08445	0.12	-1.0
1,908,739	-		DDA3937_RS08445	0.21	-1.9
1,908,792	+		DDA3937_RS08445	0.23	+0.4
1,908,793	-		DDA3937_RS08445	0.23	+1.9
1,908,793	-		DDA3937_RS08445	0.23	+0.8
1,908,793	-		DDA3937_RS08445	0.23	-1.9
1,908,908	-				+0.5
1,908,984	+		DDA3937_RS08445	0.32	-0.2
1,909,005	+		DDA3937_RS08445	0.33	-0.7
1,909,022	+		DDA3937_RS08445	0.34	+0.3
1,909,060	+		DDA3937_RS08445	0.35	-1.6
1,909,061	-		DDA3937_RS08445	0.36	-0.7
1,909,062	+		DDA3937_RS08445	0.36	-1.4
1,909,062	+		DDA3937_RS08445	0.36	+1.2
1,909,062	+		DDA3937_RS08445	0.36	-0.9
1,909,062	+		DDA3937_RS08445	0.36	-2.0
1,909,063	-		DDA3937_RS08445	0.36	-0.9
1,909,063	-		DDA3937_RS08445	0.36	+0.5
1,909,063	-				-0.0
1,909,075	+		DDA3937_RS08445	0.36	-0.2
1,909,076	-		DDA3937_RS08445	0.36	+0.8
1,909,076	-		DDA3937_RS08445	0.36	-1.0
1,909,101	-		DDA3937_RS08445	0.37	+0.7
1,909,119	+		DDA3937_RS08445	0.38	+0.6
1,909,125	+		DDA3937_RS08445	0.38	-0.1
1,909,125	+		DDA3937_RS08445	0.38	-0.5
1,909,153	+		DDA3937_RS08445	0.40	-0.0
1,909,153	+		DDA3937_RS08445	0.40	-1.0
1,909,153	+		DDA3937_RS08445	0.40	-0.7
1,909,154	-		DDA3937_RS08445	0.40	+0.0
1,909,154	-		DDA3937_RS08445	0.40	-0.9
1,909,176	-		DDA3937_RS08445	0.41	-2.7
1,909,176	-		DDA3937_RS08445	0.41	-0.3
1,909,199	-		DDA3937_RS08445	0.42	+0.4
1,909,213	+				+2.0
1,909,214	-		DDA3937_RS08445	0.42	+1.5
1,909,240	+		DDA3937_RS08445	0.44	+1.0
1,909,252	-		DDA3937_RS08445	0.44	+1.2
1,909,288	+		DDA3937_RS08445	0.46	-1.2
1,909,288	+		DDA3937_RS08445	0.46	-1.0
1,909,304	+		DDA3937_RS08445	0.47	-2.6
1,909,305	-		DDA3937_RS08445	0.47	-1.6
1,909,305	-		DDA3937_RS08445	0.47	-1.2
1,909,342	+		DDA3937_RS08445	0.48	+2.1
1,909,343	-		DDA3937_RS08445	0.48	-0.1
1,909,343	-		DDA3937_RS08445	0.48	-0.2
1,909,344	+		DDA3937_RS08445	0.48	-1.2
1,909,344	+		DDA3937_RS08445	0.48	-0.5
1,909,344	+		DDA3937_RS08445	0.48	-0.6
1,909,344	+		DDA3937_RS08445	0.48	-1.0
1,909,345	-		DDA3937_RS08445	0.48	+2.0
1,909,365	-		DDA3937_RS08445	0.49	-0.2
1,909,366	+		DDA3937_RS08445	0.49	+0.4
1,909,366	+		DDA3937_RS08445	0.49	-0.6
1,909,366	+		DDA3937_RS08445	0.49	-1.0
1,909,367	-				-1.4
1,909,367	-		DDA3937_RS08445	0.49	-1.0
1,909,367	-		DDA3937_RS08445	0.49	-1.0
1,909,367	-		DDA3937_RS08445	0.49	-1.0
1,909,367	-		DDA3937_RS08445	0.49	-0.5
1,909,367	-		DDA3937_RS08445	0.49	-0.5
1,909,378	+		DDA3937_RS08445	0.50	-1.0
1,909,379	-		DDA3937_RS08445	0.50	+0.6
1,909,379	-		DDA3937_RS08445	0.50	+1.4
1,909,379	-		DDA3937_RS08445	0.50	-1.2
1,909,387	+		DDA3937_RS08445	0.50	+1.1
1,909,387	+		DDA3937_RS08445	0.50	+0.4
1,909,388	-		DDA3937_RS08445	0.50	+1.0
1,909,390	+		DDA3937_RS08445	0.50	-1.2
1,909,409	+		DDA3937_RS08445	0.51	+2.1
1,909,410	-		DDA3937_RS08445	0.51	-2.0
1,909,410	-		DDA3937_RS08445	0.51	-0.6
1,909,416	+		DDA3937_RS08445	0.52	-0.2
1,909,416	+		DDA3937_RS08445	0.52	+0.2
1,909,417	-		DDA3937_RS08445	0.52	-2.0
1,909,417	-		DDA3937_RS08445	0.52	-0.5
1,909,443	+		DDA3937_RS08445	0.53	-1.5
1,909,443	+				-0.4
1,909,444	-		DDA3937_RS08445	0.53	-0.6
1,909,505	-		DDA3937_RS08445	0.56	+0.5
1,909,505	-		DDA3937_RS08445	0.56	+0.7
1,909,508	+		DDA3937_RS08445	0.56	-1.2
1,909,508	+		DDA3937_RS08445	0.56	-0.4
1,909,508	+		DDA3937_RS08445	0.56	-0.2
1,909,508	+		DDA3937_RS08445	0.56	-1.0
1,909,508	+		DDA3937_RS08445	0.56	+1.3
1,909,509	-		DDA3937_RS08445	0.56	+0.8
1,909,509	-		DDA3937_RS08445	0.56	+2.9
1,909,509	-		DDA3937_RS08445	0.56	-1.6
1,909,509	-		DDA3937_RS08445	0.56	-1.2
1,909,509	-		DDA3937_RS08445	0.56	-0.2
1,909,509	-		DDA3937_RS08445	0.56	+1.4
1,909,675	+		DDA3937_RS08445	0.63	+1.0
1,909,676	-		DDA3937_RS08445	0.63	-0.7
1,909,685	-		DDA3937_RS08445	0.64	+1.4
1,909,691	+		DDA3937_RS08445	0.64	-1.9
1,909,691	+		DDA3937_RS08445	0.64	+0.4
1,909,691	+		DDA3937_RS08445	0.64	-2.0
1,909,691	+		DDA3937_RS08445	0.64	-1.0
1,909,691	+		DDA3937_RS08445	0.64	+0.4
1,909,691	+		DDA3937_RS08445	0.64	+0.1
1,909,691	+		DDA3937_RS08445	0.64	-0.0
1,909,692	-		DDA3937_RS08445	0.64	+2.2
1,909,693	+				-0.6
1,909,693	+		DDA3937_RS08445	0.64	-2.4
1,909,693	+		DDA3937_RS08445	0.64	-2.4
1,909,693	+		DDA3937_RS08445	0.64	+1.1
1,909,693	+		DDA3937_RS08445	0.64	-0.4
1,909,693	+		DDA3937_RS08445	0.64	-0.0
1,909,693	+		DDA3937_RS08445	0.64	-0.2
1,909,693	+		DDA3937_RS08445	0.64	-1.6
1,909,694	-		DDA3937_RS08445	0.64	+0.4
1,909,694	-		DDA3937_RS08445	0.64	-1.1
1,909,694	-		DDA3937_RS08445	0.64	-2.9
1,909,694	-		DDA3937_RS08445	0.64	-1.9
1,909,694	-		DDA3937_RS08445	0.64	-0.6
1,909,695	+		DDA3937_RS08445	0.64	+0.8
1,909,695	+		DDA3937_RS08445	0.64	+0.4
1,909,695	+				-1.4
1,909,695	+		DDA3937_RS08445	0.64	-0.3
1,909,695	+		DDA3937_RS08445	0.64	+0.1
1,909,695	+		DDA3937_RS08445	0.64	-0.0
1,909,696	-		DDA3937_RS08445	0.64	-0.6
1,909,696	-		DDA3937_RS08445	0.64	-0.2
1,909,696	-		DDA3937_RS08445	0.64	-1.6
1,909,696	-				+0.5
1,909,696	-		DDA3937_RS08445	0.64	-1.6
1,909,696	-				-1.0
1,909,696	-		DDA3937_RS08445	0.64	+0.7
1,909,696	-		DDA3937_RS08445	0.64	-1.6
1,909,698	+		DDA3937_RS08445	0.64	-1.3
1,909,698	+		DDA3937_RS08445	0.64	+0.6
1,909,762	-		DDA3937_RS08445	0.67	-0.3
1,909,795	+		DDA3937_RS08445	0.69	-0.6
1,909,796	-		DDA3937_RS08445	0.69	-0.5
1,909,826	+		DDA3937_RS08445	0.70	-0.8
1,909,873	+		DDA3937_RS08445	0.72	+0.0
1,909,873	+		DDA3937_RS08445	0.72	+0.4
1,909,888	-		DDA3937_RS08445	0.73	+0.0
1,909,908	+		DDA3937_RS08445	0.74	-2.5
1,909,908	+		DDA3937_RS08445	0.74	+1.2
1,909,908	+		DDA3937_RS08445	0.74	-1.4
1,909,908	+		DDA3937_RS08445	0.74	-0.9
1,909,908	+		DDA3937_RS08445	0.74	-0.4
1,909,909	-		DDA3937_RS08445	0.74	-0.9
1,909,909	-		DDA3937_RS08445	0.74	+1.0
1,909,909	-		DDA3937_RS08445	0.74	-0.0
1,909,954	+		DDA3937_RS08445	0.76	-0.6
1,909,954	+		DDA3937_RS08445	0.76	+1.6
1,909,954	+		DDA3937_RS08445	0.76	+0.1
1,909,954	+		DDA3937_RS08445	0.76	-2.6
1,909,960	-		DDA3937_RS08445	0.76	+0.5
1,909,960	-		DDA3937_RS08445	0.76	+0.5
1,909,969	+		DDA3937_RS08445	0.77	-0.0
1,909,969	+		DDA3937_RS08445	0.77	-1.2
1,909,990	-		DDA3937_RS08445	0.78	-0.8
1,909,990	-		DDA3937_RS08445	0.78	+0.5
1,910,016	+		DDA3937_RS08445	0.79	-1.4
1,910,016	+		DDA3937_RS08445	0.79	+0.2
1,910,016	+		DDA3937_RS08445	0.79	-2.7
1,910,016	+		DDA3937_RS08445	0.79	-0.5
1,910,016	+		DDA3937_RS08445	0.79	-2.0
1,910,016	+		DDA3937_RS08445	0.79	-1.2
1,910,016	+		DDA3937_RS08445	0.79	-2.6
1,910,034	+		DDA3937_RS08445	0.80	-0.3
1,910,034	+		DDA3937_RS08445	0.80	+0.4
1,910,035	-		DDA3937_RS08445	0.80	+0.5
1,910,078	+		DDA3937_RS08445	0.82	-0.4
1,910,117	+		DDA3937_RS08445	0.84	-2.0
1,910,117	+		DDA3937_RS08445	0.84	+1.4
1,910,142	+		DDA3937_RS08445	0.85	-0.6
1,910,143	-		DDA3937_RS08445	0.85	-1.2
1,910,153	+		DDA3937_RS08445	0.85	+0.0
1,910,153	+		DDA3937_RS08445	0.85	-0.6
1,910,178	+		DDA3937_RS08445	0.86	+0.1
1,910,178	+		DDA3937_RS08445	0.86	-0.6
1,910,178	+		DDA3937_RS08445	0.86	+0.8
1,910,179	-		DDA3937_RS08445	0.86	+0.6
1,910,196	+		DDA3937_RS08445	0.87	-0.0
1,910,196	+		DDA3937_RS08445	0.87	-1.4
1,910,253	+		DDA3937_RS08445	0.90	-1.2
1,910,253	+		DDA3937_RS08445	0.90	+0.2
1,910,253	+		DDA3937_RS08445	0.90	+1.0
1,910,254	-		DDA3937_RS08445	0.90	-0.2
1,910,256	+		DDA3937_RS08445	0.90	+0.7
1,910,256	+		DDA3937_RS08445	0.90	-0.2
1,910,256	+		DDA3937_RS08445	0.90	-2.4
1,910,257	-		DDA3937_RS08445	0.90	+1.0
1,910,274	+				+0.5
1,910,303	+				-0.9
1,910,304	-				-0.9
1,910,304	-				-0.3
1,910,318	+				-0.5
1,910,349	+				+1.2
1,910,349	+				-1.9
1,910,350	-				-2.6
1,910,410	+				-1.3
1,910,431	-				+0.7
1,910,452	+				+0.1
1,910,452	+				-0.6
1,910,452	+				-0.9
1,910,452	+				-0.5
1,910,453	-				-1.3
1,910,453	-				+0.8
1,910,453	-				-0.1
1,910,453	-				+0.3
1,910,453	-				-0.0
1,910,453	-				-0.6
1,910,541	+				-1.9
1,910,541	+				+0.1
1,910,541	+				-0.1
1,910,541	+				+0.1
1,910,542	-				-1.0
1,910,542	-				-0.4
1,910,542	-				+1.0
1,910,551	+				-0.9
1,910,604	-				+0.4
1,910,614	-				-0.4
1,910,627	-				-0.9
1,910,646	-				-0.3
1,910,812	+				-1.0
1,910,816	-				-1.4
1,910,881	+				-0.2
1,910,881	+				-0.6
1,910,881	+				+0.8
1,910,881	+				-1.0
1,910,892	+				+0.6
1,910,893	-				-1.9
1,910,912	-				-0.4
1,910,934	+				-1.5
1,911,182	+		DDA3937_RS08455	0.52	-0.0
1,911,182	+		DDA3937_RS08455	0.52	-2.0
1,911,182	+		DDA3937_RS08455	0.52	-2.4
1,911,182	+		DDA3937_RS08455	0.52	-1.4
1,911,183	-		DDA3937_RS08455	0.53	-0.6
1,911,183	-		DDA3937_RS08455	0.53	-0.8
1,911,183	-		DDA3937_RS08455	0.53	-0.6
1,911,267	+		DDA3937_RS08455	0.68	+0.4
1,911,267	+		DDA3937_RS08455	0.68	-0.6
1,911,268	-		DDA3937_RS08455	0.68	-0.6
1,911,268	-		DDA3937_RS08455	0.68	-0.3
1,911,268	-		DDA3937_RS08455	0.68	-0.1
1,911,268	-		DDA3937_RS08455	0.68	+0.7
1,911,329	-				-0.6
1,911,331	+		DDA3937_RS08455	0.79	-1.5
1,911,331	+		DDA3937_RS08455	0.79	-0.0
1,911,340	+		DDA3937_RS08455	0.81	-2.0
1,911,395	-				+0.2
1,911,421	-				-0.4
1,911,421	-				+4.5
1,911,421	-				-0.0
1,911,424	-				+0.1
1,911,445	+				-1.9
1,911,446	-				-1.2