Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS08275 and DDA3937_RS08280 overlap by 4 nucleotides DDA3937_RS08280 and DDA3937_RS08285 are separated by 189 nucleotides DDA3937_RS08285 and DDA3937_RS08290 are separated by 313 nucleotides DDA3937_RS08290 and DDA3937_RS08295 are separated by 201 nucleotides
DDA3937_RS08275: DDA3937_RS08275 - DNA/RNA non-specific endonuclease, at 1,872,042 to 1,872,629
_RS08275
DDA3937_RS08280: DDA3937_RS08280 - RhsIA family immunity protein, at 1,872,626 to 1,873,036
_RS08280
DDA3937_RS08285: DDA3937_RS08285 - pyridoxamine 5'-phosphate oxidase family protein, at 1,873,226 to 1,874,470
_RS08285
DDA3937_RS08290: DDA3937_RS08290 - VOC family protein, at 1,874,784 to 1,875,176
_RS08290
DDA3937_RS08295: DDA3937_RS08295 - alpha/beta hydrolase, at 1,875,378 to 1,876,295
_RS08295
Position (kb) 1873
1874
1875 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 1872.284 kb on + strand, within DDA3937_RS08275 at 1872.285 kb on - strand, within DDA3937_RS08275 at 1872.285 kb on - strand, within DDA3937_RS08275 at 1872.347 kb on + strand, within DDA3937_RS08275 at 1872.354 kb on - strand, within DDA3937_RS08275 at 1872.355 kb on + strand, within DDA3937_RS08275 at 1872.355 kb on + strand, within DDA3937_RS08275 at 1872.355 kb on + strand, within DDA3937_RS08275 at 1872.356 kb on - strand, within DDA3937_RS08275 at 1872.356 kb on - strand, within DDA3937_RS08275 at 1872.383 kb on + strand, within DDA3937_RS08275 at 1872.384 kb on - strand, within DDA3937_RS08275 at 1872.384 kb on - strand, within DDA3937_RS08275 at 1872.384 kb on - strand, within DDA3937_RS08275 at 1872.384 kb on - strand at 1872.384 kb on - strand, within DDA3937_RS08275 at 1872.385 kb on + strand, within DDA3937_RS08275 at 1872.386 kb on - strand, within DDA3937_RS08275 at 1872.386 kb on - strand, within DDA3937_RS08275 at 1872.386 kb on - strand, within DDA3937_RS08275 at 1872.386 kb on - strand, within DDA3937_RS08275 at 1872.386 kb on - strand, within DDA3937_RS08275 at 1872.386 kb on - strand, within DDA3937_RS08275 at 1872.386 kb on - strand, within DDA3937_RS08275 at 1872.393 kb on - strand, within DDA3937_RS08275 at 1872.493 kb on - strand, within DDA3937_RS08275 at 1872.494 kb on + strand, within DDA3937_RS08275 at 1872.495 kb on - strand, within DDA3937_RS08275 at 1872.495 kb on - strand, within DDA3937_RS08275 at 1872.497 kb on + strand, within DDA3937_RS08275 at 1872.597 kb on - strand at 1872.597 kb on - strand at 1872.634 kb on + strand at 1872.635 kb on - strand at 1872.635 kb on - strand at 1872.705 kb on - strand, within DDA3937_RS08280 at 1872.759 kb on + strand, within DDA3937_RS08280 at 1872.759 kb on + strand, within DDA3937_RS08280 at 1872.766 kb on + strand, within DDA3937_RS08280 at 1872.767 kb on - strand, within DDA3937_RS08280 at 1872.822 kb on + strand, within DDA3937_RS08280 at 1872.866 kb on - strand, within DDA3937_RS08280 at 1873.219 kb on + strand at 1873.252 kb on - strand at 1873.328 kb on + strand at 1873.328 kb on + strand at 1873.329 kb on - strand at 1873.329 kb on - strand at 1873.336 kb on - strand at 1873.336 kb on - strand at 1873.336 kb on - strand at 1873.339 kb on + strand at 1873.340 kb on - strand at 1873.340 kb on - strand at 1873.340 kb on - strand at 1873.340 kb on - strand at 1873.340 kb on - strand at 1873.340 kb on - strand at 1873.395 kb on - strand, within DDA3937_RS08285 at 1873.427 kb on + strand, within DDA3937_RS08285 at 1873.434 kb on + strand, within DDA3937_RS08285 at 1873.434 kb on + strand, within DDA3937_RS08285 at 1873.435 kb on - strand, within DDA3937_RS08285 at 1873.435 kb on - strand, within DDA3937_RS08285 at 1873.462 kb on + strand, within DDA3937_RS08285 at 1873.463 kb on - strand, within DDA3937_RS08285 at 1873.463 kb on - strand, within DDA3937_RS08285 at 1873.491 kb on + strand, within DDA3937_RS08285 at 1873.492 kb on - strand, within DDA3937_RS08285 at 1873.658 kb on - strand, within DDA3937_RS08285 at 1873.765 kb on + strand, within DDA3937_RS08285 at 1873.765 kb on + strand, within DDA3937_RS08285 at 1873.766 kb on - strand, within DDA3937_RS08285 at 1873.766 kb on - strand, within DDA3937_RS08285 at 1873.766 kb on - strand, within DDA3937_RS08285 at 1873.769 kb on + strand, within DDA3937_RS08285 at 1873.769 kb on + strand, within DDA3937_RS08285 at 1873.769 kb on + strand, within DDA3937_RS08285 at 1873.769 kb on + strand, within DDA3937_RS08285 at 1873.769 kb on + strand, within DDA3937_RS08285 at 1873.769 kb on + strand, within DDA3937_RS08285 at 1873.770 kb on - strand, within DDA3937_RS08285 at 1873.770 kb on - strand, within DDA3937_RS08285 at 1873.770 kb on - strand, within DDA3937_RS08285 at 1873.770 kb on - strand, within DDA3937_RS08285 at 1873.770 kb on - strand, within DDA3937_RS08285 at 1873.770 kb on - strand, within DDA3937_RS08285 at 1873.775 kb on - strand, within DDA3937_RS08285 at 1873.775 kb on - strand, within DDA3937_RS08285 at 1873.775 kb on - strand, within DDA3937_RS08285 at 1873.967 kb on + strand, within DDA3937_RS08285 at 1873.967 kb on + strand, within DDA3937_RS08285 at 1873.967 kb on + strand, within DDA3937_RS08285 at 1873.968 kb on - strand, within DDA3937_RS08285 at 1873.968 kb on - strand, within DDA3937_RS08285 at 1873.968 kb on - strand, within DDA3937_RS08285 at 1873.968 kb on - strand, within DDA3937_RS08285 at 1873.968 kb on - strand, within DDA3937_RS08285 at 1873.968 kb on - strand, within DDA3937_RS08285 at 1874.037 kb on + strand, within DDA3937_RS08285 at 1874.038 kb on - strand, within DDA3937_RS08285 at 1874.038 kb on - strand, within DDA3937_RS08285 at 1874.083 kb on + strand at 1874.083 kb on + strand, within DDA3937_RS08285 at 1874.084 kb on - strand, within DDA3937_RS08285 at 1874.102 kb on + strand at 1874.426 kb on + strand at 1874.426 kb on + strand at 1874.426 kb on + strand at 1874.492 kb on + strand at 1874.492 kb on + strand at 1874.579 kb on + strand at 1874.579 kb on + strand at 1874.625 kb on - strand at 1874.641 kb on + strand at 1874.683 kb on + strand at 1874.683 kb on + strand at 1874.683 kb on + strand at 1874.683 kb on + strand at 1874.684 kb on - strand at 1874.684 kb on - strand at 1874.684 kb on - strand at 1874.684 kb on - strand at 1874.685 kb on + strand at 1874.685 kb on + strand at 1874.685 kb on + strand at 1874.685 kb on + strand at 1874.685 kb on + strand at 1874.685 kb on + strand at 1874.686 kb on - strand at 1874.686 kb on - strand at 1874.686 kb on - strand at 1874.686 kb on - strand at 1874.686 kb on - strand at 1874.686 kb on - strand at 1874.686 kb on - strand at 1874.686 kb on - strand at 1874.686 kb on - strand at 1874.686 kb on - strand at 1874.689 kb on + strand at 1874.689 kb on + strand at 1874.689 kb on + strand at 1874.690 kb on - strand at 1874.732 kb on - strand at 1874.732 kb on - strand at 1874.781 kb on + strand at 1874.795 kb on - strand at 1874.797 kb on + strand at 1874.797 kb on + strand at 1874.798 kb on - strand at 1874.798 kb on - strand at 1874.798 kb on - strand at 1874.798 kb on - strand at 1874.798 kb on - strand at 1874.798 kb on - strand at 1874.798 kb on - strand at 1874.798 kb on - strand at 1874.811 kb on + strand at 1874.811 kb on + strand at 1874.812 kb on - strand at 1874.812 kb on - strand at 1874.812 kb on - strand at 1874.814 kb on - strand at 1874.827 kb on + strand, within DDA3937_RS08290 at 1874.828 kb on - strand, within DDA3937_RS08290 at 1874.828 kb on - strand at 1874.867 kb on + strand, within DDA3937_RS08290 at 1874.867 kb on + strand, within DDA3937_RS08290 at 1874.868 kb on - strand, within DDA3937_RS08290 at 1874.868 kb on - strand, within DDA3937_RS08290 at 1875.149 kb on + strand at 1875.149 kb on + strand at 1875.150 kb on - strand at 1875.150 kb on - strand at 1875.150 kb on - strand at 1875.156 kb on + strand at 1875.156 kb on + strand at 1875.156 kb on + strand at 1875.157 kb on - strand at 1875.157 kb on - strand at 1875.213 kb on - strand at 1875.213 kb on - strand at 1875.213 kb on - strand at 1875.213 kb on - strand at 1875.213 kb on - strand at 1875.243 kb on + strand at 1875.260 kb on + strand at 1875.294 kb on + strand at 1875.294 kb on + strand at 1875.294 kb on + strand at 1875.295 kb on - strand at 1875.295 kb on - strand at 1875.295 kb on - strand at 1875.429 kb on + strand at 1875.430 kb on - strand at 1875.430 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 1,872,284 + DDA3937_RS08275 0.41 -0.9 1,872,285 - DDA3937_RS08275 0.41 -1.0 1,872,285 - DDA3937_RS08275 0.41 +1.0 1,872,347 + DDA3937_RS08275 0.52 +0.6 1,872,354 - DDA3937_RS08275 0.53 -1.4 1,872,355 + DDA3937_RS08275 0.53 -0.3 1,872,355 + DDA3937_RS08275 0.53 -0.9 1,872,355 + DDA3937_RS08275 0.53 +1.4 1,872,356 - DDA3937_RS08275 0.53 -0.5 1,872,356 - DDA3937_RS08275 0.53 +0.1 1,872,383 + DDA3937_RS08275 0.58 -0.1 1,872,384 - DDA3937_RS08275 0.58 +0.7 1,872,384 - DDA3937_RS08275 0.58 -0.0 1,872,384 - DDA3937_RS08275 0.58 -1.0 1,872,384 - -0.0 1,872,384 - DDA3937_RS08275 0.58 -1.0 1,872,385 + DDA3937_RS08275 0.58 -0.8 1,872,386 - DDA3937_RS08275 0.59 +1.0 1,872,386 - DDA3937_RS08275 0.59 -0.6 1,872,386 - DDA3937_RS08275 0.59 +0.2 1,872,386 - DDA3937_RS08275 0.59 -0.6 1,872,386 - DDA3937_RS08275 0.59 -2.5 1,872,386 - DDA3937_RS08275 0.59 -1.0 1,872,386 - DDA3937_RS08275 0.59 -0.0 1,872,393 - DDA3937_RS08275 0.60 +0.6 1,872,493 - DDA3937_RS08275 0.77 -0.9 1,872,494 + DDA3937_RS08275 0.77 +1.0 1,872,495 - DDA3937_RS08275 0.77 +0.8 1,872,495 - DDA3937_RS08275 0.77 -1.6 1,872,497 + DDA3937_RS08275 0.77 -0.6 1,872,597 - -0.7 1,872,597 - -1.0 1,872,634 + -1.5 1,872,635 - -0.3 1,872,635 - -0.1 1,872,705 - DDA3937_RS08280 0.19 -1.0 1,872,759 + DDA3937_RS08280 0.32 +0.6 1,872,759 + DDA3937_RS08280 0.32 +0.3 1,872,766 + DDA3937_RS08280 0.34 -2.2 1,872,767 - DDA3937_RS08280 0.34 -0.9 1,872,822 + DDA3937_RS08280 0.48 +0.1 1,872,866 - DDA3937_RS08280 0.58 -0.6 1,873,219 + -1.7 1,873,252 - -0.7 1,873,328 + -0.4 1,873,328 + -0.4 1,873,329 - +0.6 1,873,329 - -1.4 1,873,336 - +2.0 1,873,336 - -0.6 1,873,336 - -0.1 1,873,339 + -0.4 1,873,340 - -0.6 1,873,340 - -1.6 1,873,340 - -0.4 1,873,340 - -0.2 1,873,340 - +0.2 1,873,340 - -0.6 1,873,395 - DDA3937_RS08285 0.14 -1.0 1,873,427 + DDA3937_RS08285 0.16 +0.4 1,873,434 + DDA3937_RS08285 0.17 -0.0 1,873,434 + DDA3937_RS08285 0.17 +0.2 1,873,435 - DDA3937_RS08285 0.17 -1.5 1,873,435 - DDA3937_RS08285 0.17 +2.4 1,873,462 + DDA3937_RS08285 0.19 -1.4 1,873,463 - DDA3937_RS08285 0.19 -1.1 1,873,463 - DDA3937_RS08285 0.19 +2.0 1,873,491 + DDA3937_RS08285 0.21 -1.6 1,873,492 - DDA3937_RS08285 0.21 +0.2 1,873,658 - DDA3937_RS08285 0.35 -0.5 1,873,765 + DDA3937_RS08285 0.43 -1.1 1,873,765 + DDA3937_RS08285 0.43 +1.0 1,873,766 - DDA3937_RS08285 0.43 +1.3 1,873,766 - DDA3937_RS08285 0.43 +0.3 1,873,766 - DDA3937_RS08285 0.43 +0.3 1,873,769 + DDA3937_RS08285 0.44 -0.4 1,873,769 + DDA3937_RS08285 0.44 +1.9 1,873,769 + DDA3937_RS08285 0.44 +1.6 1,873,769 + DDA3937_RS08285 0.44 +1.0 1,873,769 + DDA3937_RS08285 0.44 +0.3 1,873,769 + DDA3937_RS08285 0.44 -0.5 1,873,770 - DDA3937_RS08285 0.44 -0.2 1,873,770 - DDA3937_RS08285 0.44 -2.7 1,873,770 - DDA3937_RS08285 0.44 -1.4 1,873,770 - DDA3937_RS08285 0.44 -0.1 1,873,770 - DDA3937_RS08285 0.44 -0.1 1,873,770 - DDA3937_RS08285 0.44 -0.2 1,873,775 - DDA3937_RS08285 0.44 -1.0 1,873,775 - DDA3937_RS08285 0.44 +3.7 1,873,775 - DDA3937_RS08285 0.44 +0.7 1,873,967 + DDA3937_RS08285 0.60 -1.3 1,873,967 + DDA3937_RS08285 0.60 -0.5 1,873,967 + DDA3937_RS08285 0.60 -1.4 1,873,968 - DDA3937_RS08285 0.60 -1.4 1,873,968 - DDA3937_RS08285 0.60 -1.0 1,873,968 - DDA3937_RS08285 0.60 -1.7 1,873,968 - DDA3937_RS08285 0.60 +0.1 1,873,968 - DDA3937_RS08285 0.60 -1.8 1,873,968 - DDA3937_RS08285 0.60 +0.1 1,874,037 + DDA3937_RS08285 0.65 -1.0 1,874,038 - DDA3937_RS08285 0.65 +1.4 1,874,038 - DDA3937_RS08285 0.65 -1.8 1,874,083 + -1.0 1,874,083 + DDA3937_RS08285 0.69 +0.5 1,874,084 - DDA3937_RS08285 0.69 -0.0 1,874,102 + -1.4 1,874,426 + +0.2 1,874,426 + -1.4 1,874,426 + +0.5 1,874,492 + -0.9 1,874,492 + -0.3 1,874,579 + -0.8 1,874,579 + -0.4 1,874,625 - +1.0 1,874,641 + +0.6 1,874,683 + +1.0 1,874,683 + -3.7 1,874,683 + -0.7 1,874,683 + +0.2 1,874,684 - -0.4 1,874,684 - -0.6 1,874,684 - +0.6 1,874,684 - -1.6 1,874,685 + +0.2 1,874,685 + -0.4 1,874,685 + -0.3 1,874,685 + +1.2 1,874,685 + -1.6 1,874,685 + +0.1 1,874,686 - -0.6 1,874,686 - -0.0 1,874,686 - -0.0 1,874,686 - -2.6 1,874,686 - +4.6 1,874,686 - -0.1 1,874,686 - -1.2 1,874,686 - -0.4 1,874,686 - -0.4 1,874,686 - +0.2 1,874,689 + -2.0 1,874,689 + +2.0 1,874,689 + -0.3 1,874,690 - +0.3 1,874,732 - -0.3 1,874,732 - -0.0 1,874,781 + -2.0 1,874,795 - -1.7 1,874,797 + -0.9 1,874,797 + -0.3 1,874,798 - -1.4 1,874,798 - -1.8 1,874,798 - -1.8 1,874,798 - -0.8 1,874,798 - -1.4 1,874,798 - +0.7 1,874,798 - -1.0 1,874,798 - +1.6 1,874,811 + +2.0 1,874,811 + -0.8 1,874,812 - -0.4 1,874,812 - -0.0 1,874,812 - -0.2 1,874,814 - -0.0 1,874,827 + DDA3937_RS08290 0.11 -1.1 1,874,828 - DDA3937_RS08290 0.11 +1.0 1,874,828 - +0.4 1,874,867 + DDA3937_RS08290 0.21 -0.0 1,874,867 + DDA3937_RS08290 0.21 -0.5 1,874,868 - DDA3937_RS08290 0.21 -1.1 1,874,868 - DDA3937_RS08290 0.21 +0.1 1,875,149 + -1.0 1,875,149 + -2.0 1,875,150 - -1.4 1,875,150 - -0.8 1,875,150 - -0.3 1,875,156 + -0.3 1,875,156 + +0.8 1,875,156 + -0.4 1,875,157 - +1.6 1,875,157 - -0.1 1,875,213 - +0.6 1,875,213 - -1.2 1,875,213 - -1.0 1,875,213 - -1.8 1,875,213 - -0.9 1,875,243 + -1.8 1,875,260 + +0.2 1,875,294 + -0.3 1,875,294 + -0.4 1,875,294 + +0.6 1,875,295 - -0.1 1,875,295 - -0.3 1,875,295 - +3.7 1,875,429 + -1.6 1,875,430 - -0.6 1,875,430 - -0.9
Or see this region's nucleotide sequence