Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS07790

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,758,091	+		DDA3937_RS07780	0.47	+0.0
1,758,091	+		DDA3937_RS07780	0.47	+0.4
1,758,091	+		DDA3937_RS07780	0.47	+0.5
1,758,091	+		DDA3937_RS07780	0.47	+0.2
1,758,092	-				+1.0
1,758,092	-				-0.6
1,758,092	-		DDA3937_RS07780	0.47	+1.3
1,758,110	+		DDA3937_RS07780	0.50	-1.2
1,758,111	-		DDA3937_RS07780	0.50	+0.4
1,758,111	-		DDA3937_RS07780	0.50	-0.0
1,758,111	-		DDA3937_RS07780	0.50	-2.3
1,758,139	+		DDA3937_RS07780	0.56	+0.1
1,758,199	+		DDA3937_RS07780	0.68	-0.6
1,758,199	+		DDA3937_RS07780	0.68	+0.0
1,758,199	+		DDA3937_RS07780	0.68	-0.3
1,758,200	-		DDA3937_RS07780	0.68	+0.6
1,758,200	-		DDA3937_RS07780	0.68	+1.0
1,758,200	-		DDA3937_RS07780	0.68	-0.3
1,758,200	-		DDA3937_RS07780	0.68	-1.3
1,758,200	-		DDA3937_RS07780	0.68	+2.7
1,758,391	+				-0.7
1,758,391	+				-1.1
1,758,392	-				-1.3
1,758,392	-				+1.0
1,758,393	+				+1.0
1,758,393	+				+0.5
1,758,393	+				-0.8
1,758,393	+				-0.1
1,758,394	-				-0.6
1,758,394	-				+1.5
1,758,394	-				-0.4
1,758,394	-				+1.0
1,758,394	-				+1.0
1,758,394	-				+1.4
1,758,394	-				-0.7
1,758,496	-				+0.5
1,758,496	-				+1.8
1,758,496	-				-1.3
1,758,496	-				-0.2
1,758,507	+				-0.1
1,758,507	+				-2.6
1,758,508	-				-0.3
1,758,521	+				+0.3
1,758,522	-				+0.3
1,758,710	+		DDA3937_RS07785	0.51	+0.2
1,758,725	+				+1.0
1,758,726	-		DDA3937_RS07785	0.55	-0.1
1,758,726	-		DDA3937_RS07785	0.55	+0.1
1,759,012	+				-0.7
1,759,012	+				+0.4
1,759,012	+				-0.7
1,759,013	-				-1.3
1,759,013	-				+0.0
1,759,013	-				+1.6
1,759,154	+				-1.0
1,759,199	+		DDA3937_RS07790	0.11	+0.0
1,759,373	+		DDA3937_RS07790	0.27	+0.3
1,759,373	+		DDA3937_RS07790	0.27	+2.0
1,759,420	+		DDA3937_RS07790	0.31	-1.6
1,759,420	+		DDA3937_RS07790	0.31	-2.6
1,759,421	-		DDA3937_RS07790	0.31	-2.0
1,759,421	-		DDA3937_RS07790	0.31	+1.0
1,759,500	+		DDA3937_RS07790	0.39	-0.3
1,759,500	+		DDA3937_RS07790	0.39	-0.4
1,759,500	+		DDA3937_RS07790	0.39	+1.1
1,759,501	-		DDA3937_RS07790	0.39	+0.5
1,759,501	-		DDA3937_RS07790	0.39	-0.3
1,759,547	+		DDA3937_RS07790	0.43	-1.7
1,759,547	+		DDA3937_RS07790	0.43	+0.0
1,759,548	-		DDA3937_RS07790	0.43	+0.1
1,759,548	-		DDA3937_RS07790	0.43	-0.7
1,759,548	-		DDA3937_RS07790	0.43	-0.2
1,759,989	+		DDA3937_RS07790	0.84	-0.3
1,759,989	+		DDA3937_RS07790	0.84	+1.0
1,759,990	-		DDA3937_RS07790	0.84	-1.8
1,759,990	-		DDA3937_RS07790	0.84	-2.2
1,759,990	-		DDA3937_RS07790	0.84	-1.4
1,759,990	-		DDA3937_RS07790	0.84	-1.6
1,759,991	+		DDA3937_RS07790	0.84	+0.2
1,759,991	+		DDA3937_RS07790	0.84	-1.2
1,759,991	+		DDA3937_RS07790	0.84	+1.6
1,759,992	-		DDA3937_RS07790	0.84	+0.4
1,760,055	+		DDA3937_RS07790	0.90	-0.7
1,760,055	+		DDA3937_RS07790	0.90	-1.2
1,760,055	+		DDA3937_RS07790	0.90	+0.0
1,760,055	+		DDA3937_RS07790	0.90	+0.8
1,760,055	+		DDA3937_RS07790	0.90	-1.3
1,760,055	+		DDA3937_RS07790	0.90	-1.8
1,760,056	-		DDA3937_RS07790	0.90	-1.7
1,760,122	+				-0.8
1,760,122	+				-0.7
1,760,123	-				-0.5
1,760,123	-				+0.2
1,760,123	-				+2.5
1,760,123	-				-0.8
1,760,123	-				-0.4
1,760,123	-				-0.9
1,760,173	+				-1.1
1,760,174	+				-0.2
1,760,174	+				+1.2
1,760,174	+				-2.6
1,760,175	-				+0.3
1,760,175	-				+1.4
1,760,178	+				-0.5
1,760,178	+				+1.0
1,760,178	+				+0.0
1,760,178	+				+0.1
1,760,178	+				-2.3
1,760,178	+				-0.3
1,760,178	+				+0.2
1,760,179	-				+0.2
1,760,179	-				+0.0
1,760,179	-				+0.4
1,760,199	+				-0.4
1,760,239	+		DDA3937_RS07795	0.12	-2.2
1,760,240	-		DDA3937_RS07795	0.12	-0.8
1,760,240	-		DDA3937_RS07795	0.12	-1.8
1,760,240	-		DDA3937_RS07795	0.12	-1.2
1,760,258	+		DDA3937_RS07795	0.16	-1.8
1,760,259	-		DDA3937_RS07795	0.16	-0.2
1,760,689	+				+1.0
1,760,719	-				+0.8
1,760,719	-				-1.1
1,760,719	-				-0.9
1,760,751	-				+0.4
1,760,751	-				+4.1
1,760,751	-				-0.6
1,760,751	-				+0.0
1,760,751	-				-0.4
1,760,753	-				-2.5
1,760,762	-				+0.8
1,760,875	+				-2.3
1,760,875	+				-0.6
1,760,875	+				-0.9
1,760,875	+				-0.3
1,760,875	+				+0.2
1,760,875	+				-2.2
1,760,875	+				-0.4
1,760,875	+				-0.1
1,760,875	+				-1.5
1,760,875	+				-0.4
1,760,875	+				+2.0
1,760,881	-				-0.6
1,760,897	+				+0.2
1,760,898	-				-0.9
1,760,898	-				+1.0
1,760,901	+				+1.4
1,760,902	-				+0.1
1,760,917	-				+0.7
1,760,927	-				-0.9
1,760,978	+				-1.2
1,760,979	-				-0.1
1,761,018	+		DDA3937_RS22065	0.21	-0.4
1,761,019	-		DDA3937_RS22065	0.21	-0.5
1,761,029	+		DDA3937_RS22065	0.24	-0.9
1,761,029	+		DDA3937_RS22065	0.24	-0.7
1,761,030	-		DDA3937_RS22065	0.25	-0.8
1,761,031	+		DDA3937_RS22065	0.25	-0.5
1,761,032	-		DDA3937_RS22065	0.25	-2.2
1,761,055	+		DDA3937_RS22065	0.33	-3.1
1,761,055	+		DDA3937_RS22065	0.33	+1.4
1,761,055	+		DDA3937_RS22065	0.33	+0.6
1,761,055	+		DDA3937_RS22065	0.33	-2.8
1,761,055	+		DDA3937_RS22065	0.33	+2.1
1,761,056	-		DDA3937_RS22065	0.33	+0.7
1,761,056	-		DDA3937_RS22065	0.33	+1.0
1,761,056	-		DDA3937_RS22065	0.33	+0.3
1,761,056	-		DDA3937_RS22065	0.33	-1.6
1,761,058	+		DDA3937_RS22065	0.34	+0.3
1,761,068	+		DDA3937_RS22065	0.37	-1.3
1,761,068	+		DDA3937_RS22065	0.37	-0.3
1,761,069	-		DDA3937_RS22065	0.38	-0.2
1,761,069	-		DDA3937_RS22065	0.38	+1.0
1,761,069	-		DDA3937_RS22065	0.38	-0.7
1,761,070	+				-0.0
1,761,070	+		DDA3937_RS22065	0.38	-0.0
1,761,071	-				+0.3
1,761,110	-		DDA3937_RS22065	0.51	-0.6