Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS06640

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS22030 and DDA3937_RS06635 are separated by 169 nucleotidesDDA3937_RS06635 and DDA3937_RS06640 overlap by 14 nucleotidesDDA3937_RS06640 and DDA3937_RS06645 overlap by 1 nucleotides DDA3937_RS22030: DDA3937_RS22030 - multidrug efflux pump-associated protein, AcrZ family, at 1,481,040 to 1,481,189 _RS22030 DDA3937_RS06635: DDA3937_RS06635 - molybdate ABC transporter substrate-binding protein, at 1,481,359 to 1,482,144 _RS06635 DDA3937_RS06640: DDA3937_RS06640 - molybdate ABC transporter permease subunit, at 1,482,131 to 1,482,820 _RS06640 DDA3937_RS06645: DDA3937_RS06645 - molybdenum ABC transporter ATP-binding protein ModC, at 1,482,820 to 1,483,878 _RS06645 Position (kb) 1482 1483Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1481.187 kb on + strandat 1481.247 kb on - strandat 1481.262 kb on + strandat 1481.262 kb on + strandat 1481.263 kb on - strandat 1481.263 kb on - strandat 1481.279 kb on + strandat 1481.311 kb on - strandat 1481.311 kb on - strandat 1481.332 kb on + strandat 1481.377 kb on + strandat 1481.377 kb on + strandat 1481.378 kb on - strandat 1481.378 kb on - strandat 1481.422 kb on - strandat 1481.422 kb on - strandat 1481.444 kb on + strand, within DDA3937_RS06635at 1481.472 kb on + strand, within DDA3937_RS06635at 1481.472 kb on + strand, within DDA3937_RS06635at 1481.500 kb on + strand, within DDA3937_RS06635at 1481.536 kb on + strand, within DDA3937_RS06635at 1481.536 kb on + strand, within DDA3937_RS06635at 1481.536 kb on + strand, within DDA3937_RS06635at 1481.536 kb on + strand, within DDA3937_RS06635at 1481.623 kb on + strand, within DDA3937_RS06635at 1481.623 kb on + strand, within DDA3937_RS06635at 1481.663 kb on - strand, within DDA3937_RS06635at 1481.663 kb on - strand, within DDA3937_RS06635at 1481.812 kb on + strand, within DDA3937_RS06635at 1481.812 kb on + strand, within DDA3937_RS06635at 1481.812 kb on + strand, within DDA3937_RS06635at 1481.812 kb on + strand, within DDA3937_RS06635at 1481.812 kb on + strand, within DDA3937_RS06635at 1481.812 kb on + strand, within DDA3937_RS06635at 1481.812 kb on + strand, within DDA3937_RS06635at 1481.812 kb on + strand, within DDA3937_RS06635at 1481.812 kb on + strand, within DDA3937_RS06635at 1481.813 kb on - strand, within DDA3937_RS06635at 1481.813 kb on - strand, within DDA3937_RS06635at 1481.907 kb on - strand, within DDA3937_RS06635at 1482.017 kb on - strand, within DDA3937_RS06635at 1482.073 kb on + strandat 1482.098 kb on + strandat 1482.105 kb on + strandat 1482.105 kb on + strandat 1482.112 kb on + strandat 1482.112 kb on + strandat 1482.138 kb on + strandat 1482.138 kb on + strandat 1482.138 kb on + strandat 1482.138 kb on + strandat 1482.139 kb on - strandat 1482.139 kb on - strandat 1482.139 kb on - strandat 1482.146 kb on + strandat 1482.146 kb on + strandat 1482.147 kb on - strandat 1482.175 kb on + strandat 1482.202 kb on + strand, within DDA3937_RS06640at 1482.202 kb on + strand, within DDA3937_RS06640at 1482.371 kb on + strand, within DDA3937_RS06640at 1482.371 kb on + strand, within DDA3937_RS06640at 1482.371 kb on + strand, within DDA3937_RS06640at 1482.371 kb on + strand, within DDA3937_RS06640at 1482.372 kb on - strand, within DDA3937_RS06640at 1482.372 kb on - strand, within DDA3937_RS06640at 1482.373 kb on + strand, within DDA3937_RS06640at 1482.373 kb on + strand, within DDA3937_RS06640at 1482.373 kb on + strand, within DDA3937_RS06640at 1482.374 kb on - strand, within DDA3937_RS06640at 1482.686 kb on + strand, within DDA3937_RS06640at 1482.686 kb on + strand, within DDA3937_RS06640at 1482.686 kb on + strand, within DDA3937_RS06640at 1482.686 kb on + strand, within DDA3937_RS06640at 1482.686 kb on + strand, within DDA3937_RS06640at 1482.686 kb on + strand, within DDA3937_RS06640at 1482.686 kb on + strand, within DDA3937_RS06640at 1482.686 kb on + strand, within DDA3937_RS06640at 1482.686 kb on + strand, within DDA3937_RS06640at 1482.686 kb on + strand, within DDA3937_RS06640at 1482.687 kb on - strand, within DDA3937_RS06640at 1482.687 kb on - strand, within DDA3937_RS06640at 1482.687 kb on - strand, within DDA3937_RS06640at 1482.687 kb on - strand, within DDA3937_RS06640at 1482.687 kb on - strand, within DDA3937_RS06640at 1482.687 kb on - strand, within DDA3937_RS06640at 1482.687 kb on - strand, within DDA3937_RS06640at 1482.687 kb on - strand, within DDA3937_RS06640at 1482.688 kb on + strand, within DDA3937_RS06640at 1482.689 kb on - strand, within DDA3937_RS06640at 1482.689 kb on - strand, within DDA3937_RS06640at 1482.689 kb on - strand, within DDA3937_RS06640at 1482.818 kb on + strandat 1483.026 kb on - strand, within DDA3937_RS06645at 1483.026 kb on - strand, within DDA3937_RS06645at 1483.026 kb on - strand, within DDA3937_RS06645at 1483.327 kb on + strand, within DDA3937_RS06645at 1483.328 kb on - strand, within DDA3937_RS06645at 1483.328 kb on - strand, within DDA3937_RS06645at 1483.328 kb on - strand, within DDA3937_RS06645at 1483.369 kb on + strand, within DDA3937_RS06645at 1483.370 kb on - strand, within DDA3937_RS06645at 1483.395 kb on - strand, within DDA3937_RS06645at 1483.555 kb on + strand, within DDA3937_RS06645at 1483.556 kb on - strand, within DDA3937_RS06645at 1483.737 kb on - strand, within DDA3937_RS06645at 1483.737 kb on - strand, within DDA3937_RS06645

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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1,481,187 + +1.2
1,481,247 - -1.2
1,481,262 + -1.0
1,481,262 + +1.2
1,481,263 - -1.3
1,481,263 - -1.8
1,481,279 + +0.8
1,481,311 - -0.8
1,481,311 - +0.3
1,481,332 + -1.5
1,481,377 + +0.3
1,481,377 + +0.6
1,481,378 - -0.1
1,481,378 - -2.4
1,481,422 - -1.7
1,481,422 - -1.0
1,481,444 + DDA3937_RS06635 0.11 +0.6
1,481,472 + DDA3937_RS06635 0.14 +2.2
1,481,472 + DDA3937_RS06635 0.14 +0.7
1,481,500 + DDA3937_RS06635 0.18 +1.0
1,481,536 + DDA3937_RS06635 0.23 -1.3
1,481,536 + DDA3937_RS06635 0.23 -0.5
1,481,536 + DDA3937_RS06635 0.23 -1.7
1,481,536 + DDA3937_RS06635 0.23 +0.0
1,481,623 + DDA3937_RS06635 0.34 +1.6
1,481,623 + DDA3937_RS06635 0.34 +0.7
1,481,663 - DDA3937_RS06635 0.39 -2.5
1,481,663 - DDA3937_RS06635 0.39 -0.6
1,481,812 + DDA3937_RS06635 0.58 +0.6
1,481,812 + DDA3937_RS06635 0.58 -0.7
1,481,812 + DDA3937_RS06635 0.58 -2.5
1,481,812 + DDA3937_RS06635 0.58 +0.2
1,481,812 + DDA3937_RS06635 0.58 -0.2
1,481,812 + DDA3937_RS06635 0.58 +0.3
1,481,812 + DDA3937_RS06635 0.58 -0.2
1,481,812 + DDA3937_RS06635 0.58 -0.3
1,481,812 + DDA3937_RS06635 0.58 -0.3
1,481,813 - DDA3937_RS06635 0.58 -0.1
1,481,813 - DDA3937_RS06635 0.58 +0.3
1,481,907 - DDA3937_RS06635 0.70 +0.1
1,482,017 - DDA3937_RS06635 0.84 +0.3
1,482,073 + +1.0
1,482,098 + -0.8
1,482,105 + -0.1
1,482,105 + +0.8
1,482,112 + +2.1
1,482,112 + -1.9
1,482,138 + -2.4
1,482,138 + -0.4
1,482,138 + +0.3
1,482,138 + -0.6
1,482,139 - -0.1
1,482,139 - -0.8
1,482,139 - +1.1
1,482,146 + -3.6
1,482,146 + -1.4
1,482,147 - -1.2
1,482,175 + +1.2
1,482,202 + DDA3937_RS06640 0.10 +0.0
1,482,202 + DDA3937_RS06640 0.10 -1.2
1,482,371 + DDA3937_RS06640 0.35 +2.9
1,482,371 + DDA3937_RS06640 0.35 -2.7
1,482,371 + DDA3937_RS06640 0.35 +0.4
1,482,371 + DDA3937_RS06640 0.35 -0.1
1,482,372 - DDA3937_RS06640 0.35 -0.8
1,482,372 - DDA3937_RS06640 0.35 -0.8
1,482,373 + DDA3937_RS06640 0.35 -0.7
1,482,373 + DDA3937_RS06640 0.35 -1.7
1,482,373 + DDA3937_RS06640 0.35 -0.4
1,482,374 - DDA3937_RS06640 0.35 +1.2
1,482,686 + DDA3937_RS06640 0.80 +0.4
1,482,686 + DDA3937_RS06640 0.80 -0.2
1,482,686 + DDA3937_RS06640 0.80 +0.7
1,482,686 + DDA3937_RS06640 0.80 +0.2
1,482,686 + DDA3937_RS06640 0.80 +0.6
1,482,686 + DDA3937_RS06640 0.80 -0.2
1,482,686 + DDA3937_RS06640 0.80 +2.3
1,482,686 + DDA3937_RS06640 0.80 +0.1
1,482,686 + DDA3937_RS06640 0.80 -0.4
1,482,686 + DDA3937_RS06640 0.80 +0.7
1,482,687 - DDA3937_RS06640 0.81 +1.0
1,482,687 - DDA3937_RS06640 0.81 +0.7
1,482,687 - DDA3937_RS06640 0.81 +0.7
1,482,687 - DDA3937_RS06640 0.81 -0.5
1,482,687 - DDA3937_RS06640 0.81 -1.4
1,482,687 - DDA3937_RS06640 0.81 -0.8
1,482,687 - DDA3937_RS06640 0.81 -2.7
1,482,687 - DDA3937_RS06640 0.81 +1.2
1,482,688 + DDA3937_RS06640 0.81 -0.8
1,482,689 - DDA3937_RS06640 0.81 +4.5
1,482,689 - DDA3937_RS06640 0.81 -2.6
1,482,689 - DDA3937_RS06640 0.81 +1.2
1,482,818 + +0.4
1,483,026 - DDA3937_RS06645 0.19 -1.3
1,483,026 - DDA3937_RS06645 0.19 +0.2
1,483,026 - DDA3937_RS06645 0.19 -2.4
1,483,327 + DDA3937_RS06645 0.48 +3.0
1,483,328 - DDA3937_RS06645 0.48 -0.8
1,483,328 - DDA3937_RS06645 0.48 -0.7
1,483,328 - DDA3937_RS06645 0.48 +0.0
1,483,369 + DDA3937_RS06645 0.52 +3.3
1,483,370 - DDA3937_RS06645 0.52 -1.2
1,483,395 - DDA3937_RS06645 0.54 -1.7
1,483,555 + DDA3937_RS06645 0.69 +0.1
1,483,556 - DDA3937_RS06645 0.69 +0.2
1,483,737 - DDA3937_RS06645 0.87 -2.8
1,483,737 - DDA3937_RS06645 0.87 -0.7

Or see this region's nucleotide sequence