Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS05590

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,247,389	+				-0.8
1,247,405	+		DDA3937_RS05585	0.30	-0.1
1,247,405	+		DDA3937_RS05585	0.30	-2.0
1,247,405	+		DDA3937_RS05585	0.30	+0.1
1,247,406	-		DDA3937_RS05585	0.30	-1.8
1,247,406	-		DDA3937_RS05585	0.30	-1.9
1,247,406	-		DDA3937_RS05585	0.30	+0.3
1,247,422	-		DDA3937_RS05585	0.32	-1.1
1,247,422	-		DDA3937_RS05585	0.32	-0.6
1,247,422	-		DDA3937_RS05585	0.32	+1.4
1,247,429	-		DDA3937_RS05585	0.33	-1.5
1,247,488	+		DDA3937_RS05585	0.39	+0.6
1,247,488	+		DDA3937_RS05585	0.39	+0.8
1,247,489	-		DDA3937_RS05585	0.40	-1.2
1,247,489	-		DDA3937_RS05585	0.40	-0.6
1,247,489	-		DDA3937_RS05585	0.40	+0.1
1,247,532	+		DDA3937_RS05585	0.44	-0.8
1,247,533	-		DDA3937_RS05585	0.44	-0.7
1,247,533	-		DDA3937_RS05585	0.44	-2.3
1,247,588	+		DDA3937_RS05585	0.50	-2.3
1,247,588	+		DDA3937_RS05585	0.50	-0.6
1,247,589	-		DDA3937_RS05585	0.50	-0.3
1,247,589	-		DDA3937_RS05585	0.50	-0.8
1,247,589	-		DDA3937_RS05585	0.50	-0.8
1,247,589	-		DDA3937_RS05585	0.50	-1.1
1,247,589	-		DDA3937_RS05585	0.50	+0.6
1,247,592	+				-1.1
1,247,592	+		DDA3937_RS05585	0.51	+1.1
1,247,592	+		DDA3937_RS05585	0.51	+0.7
1,247,592	+		DDA3937_RS05585	0.51	-0.5
1,247,592	+		DDA3937_RS05585	0.51	-0.4
1,247,592	+		DDA3937_RS05585	0.51	+0.0
1,247,592	+		DDA3937_RS05585	0.51	-0.1
1,247,593	-		DDA3937_RS05585	0.51	-0.3
1,247,593	-		DDA3937_RS05585	0.51	-0.1
1,247,593	-		DDA3937_RS05585	0.51	+1.2
1,247,593	-		DDA3937_RS05585	0.51	-0.2
1,247,593	-		DDA3937_RS05585	0.51	+0.3
1,247,593	-		DDA3937_RS05585	0.51	-0.1
1,247,593	-		DDA3937_RS05585	0.51	-0.3
1,247,593	-		DDA3937_RS05585	0.51	+0.2
1,247,593	-		DDA3937_RS05585	0.51	-1.6
1,247,593	-		DDA3937_RS05585	0.51	+0.1
1,247,607	+		DDA3937_RS05585	0.52	-0.9
1,247,659	-		DDA3937_RS05585	0.58	-1.7
1,247,720	+		DDA3937_RS05585	0.65	-2.3
1,247,720	+		DDA3937_RS05585	0.65	-0.4
1,247,721	-		DDA3937_RS05585	0.65	+0.9
1,247,738	+		DDA3937_RS05585	0.67	-0.1
1,247,760	+		DDA3937_RS05585	0.69	+1.2
1,247,831	+		DDA3937_RS05585	0.77	-0.5
1,247,832	-		DDA3937_RS05585	0.77	-0.5
1,247,838	-		DDA3937_RS05585	0.78	-1.2
1,247,922	+		DDA3937_RS05585	0.87	+0.2
1,247,922	+		DDA3937_RS05585	0.87	+0.2
1,247,922	+		DDA3937_RS05585	0.87	+2.6
1,247,922	+		DDA3937_RS05585	0.87	-0.9
1,247,923	-		DDA3937_RS05585	0.87	-0.2
1,248,144	+				-0.2
1,248,145	-				-1.1
1,248,145	-				+0.5
1,248,145	-				+0.2
1,248,145	-				+0.9
1,248,145	-				-2.5
1,248,235	-				-1.3
1,248,244	+				-0.3
1,248,244	+				-0.5
1,248,245	-				-0.9
1,248,286	+				+0.2
1,248,286	+				-0.2
1,248,286	+				-1.3
1,248,286	+				-0.1
1,248,286	+				-0.8
1,248,286	+				-0.8
1,248,286	+				-1.3
1,248,287	-				+0.2
1,248,287	-				+0.6
1,248,287	-				-2.1
1,248,294	-				+0.0
1,248,294	-				-0.4
1,248,302	+				-2.6
1,248,302	+				-0.8
1,248,302	+				-1.4
1,248,302	+				-0.4
1,248,303	-				+2.6
1,248,303	-				+0.4
1,248,303	-				-1.0
1,248,303	-				+1.4
1,248,303	-				+0.7
1,248,305	+				-0.3
1,248,305	+				-1.1
1,248,305	+				-0.1
1,248,305	+				-0.8
1,248,305	+				-0.6
1,248,306	-				-0.0
1,248,306	-				+0.7
1,248,306	-				+1.4
1,248,308	+				+0.7
1,248,308	+				+1.2
1,248,308	+				+0.4
1,248,309	-				+0.1
1,248,317	+				-1.2
1,248,317	+				-0.5
1,248,318	-				+0.5
1,248,318	-				-1.7
1,248,323	+				-0.5
1,248,324	-				-1.4
1,248,333	+				-0.2
1,248,334	-				-0.6
1,248,334	-				-1.6
1,248,346	+				+0.9
1,248,346	+				-1.5
1,248,347	-				-0.3
1,248,358	+				+0.4
1,248,358	+				+0.2
1,248,359	-				-1.5
1,248,359	-				+2.2
1,248,359	-				+0.4
1,248,360	+				-0.8
1,248,361	-				-1.4
1,248,361	-				-0.2
1,248,361	-				-0.4
1,248,361	-				-1.1
1,248,361	-				-0.5
1,248,380	+				+1.4
1,248,382	+				-1.6
1,248,383	-				-0.8
1,248,383	-				-1.1
1,248,383	-				+2.5
1,248,493	+		DDA3937_RS05590	0.18	-2.6
1,248,493	+		DDA3937_RS05590	0.18	-0.6
1,248,493	+		DDA3937_RS05590	0.18	-1.1
1,248,493	+		DDA3937_RS05590	0.18	+1.8
1,248,493	+		DDA3937_RS05590	0.18	-1.3
1,248,493	+		DDA3937_RS05590	0.18	-0.6
1,248,493	+		DDA3937_RS05590	0.18	-0.1
1,248,494	-		DDA3937_RS05590	0.18	+0.2
1,248,494	-		DDA3937_RS05590	0.18	-0.2
1,248,526	+		DDA3937_RS05590	0.21	+0.6
1,248,527	-		DDA3937_RS05590	0.21	+0.3
1,248,542	-		DDA3937_RS05590	0.23	+0.6
1,248,542	-		DDA3937_RS05590	0.23	+0.2
1,248,672	-		DDA3937_RS05590	0.37	-0.5
1,248,829	+		DDA3937_RS05590	0.54	+1.3
1,248,829	+		DDA3937_RS05590	0.54	-0.3
1,248,830	-		DDA3937_RS05590	0.55	+0.0
1,248,832	+		DDA3937_RS05590	0.55	-0.1
1,248,833	-		DDA3937_RS05590	0.55	+2.8
1,248,833	-		DDA3937_RS05590	0.55	+0.6
1,248,913	+		DDA3937_RS05590	0.64	-0.1
1,248,914	-		DDA3937_RS05590	0.64	-0.3
1,248,914	-		DDA3937_RS05590	0.64	+1.0
1,248,917	+		DDA3937_RS05590	0.64	-0.9
1,248,917	+		DDA3937_RS05590	0.64	-1.2
1,248,917	+		DDA3937_RS05590	0.64	-0.6
1,248,918	-		DDA3937_RS05590	0.64	-0.6
1,248,918	-		DDA3937_RS05590	0.64	-1.3
1,248,940	+		DDA3937_RS05590	0.67	+0.1
1,248,940	+		DDA3937_RS05590	0.67	-2.1
1,248,944	+		DDA3937_RS05590	0.67	-0.9
1,248,944	+		DDA3937_RS05590	0.67	+2.1
1,248,945	-		DDA3937_RS05590	0.67	-1.2
1,248,945	-		DDA3937_RS05590	0.67	+1.1
1,248,945	-		DDA3937_RS05590	0.67	+0.0
1,248,945	-		DDA3937_RS05590	0.67	+1.5
1,248,945	-		DDA3937_RS05590	0.67	+1.0
1,249,197	+				-1.8
1,249,198	-				+2.2
1,249,198	-				-0.9
1,249,198	-				-0.3
1,249,198	-				-0.4
1,249,214	+				-0.4
1,249,214	+				-0.5
1,249,214	+				-1.6
1,249,221	-				-0.5
1,249,221	-				-1.1
1,249,268	+				+1.2
1,249,334	+				-2.1
1,249,404	-				-1.9
1,249,445	+				-1.9
1,249,445	+				+1.1
1,249,445	+				+0.2
1,249,445	+				-0.6
1,249,514	-				-2.1
1,249,527	+				-2.0
1,249,532	-				-0.6
1,249,532	-				+1.2
1,249,532	-				-1.3
1,249,543	+				-0.3
1,249,730	-		DDA3937_RS05595	0.22	+0.7
1,249,730	-		DDA3937_RS05595	0.22	-1.6
1,249,790	+		DDA3937_RS05595	0.29	-1.2
1,249,800	-		DDA3937_RS05595	0.30	+2.0