Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS05440

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,214,796	+		DDA3937_RS05435	0.30	-0.1
1,215,001	-		DDA3937_RS05435	0.51	+0.6
1,215,028	-		DDA3937_RS05435	0.54	+0.7
1,215,028	-		DDA3937_RS05435	0.54	+1.8
1,215,213	+		DDA3937_RS05435	0.73	-0.2
1,215,213	+		DDA3937_RS05435	0.73	-0.4
1,215,259	-		DDA3937_RS05435	0.77	-0.3
1,215,259	-		DDA3937_RS05435	0.77	-0.8
1,215,267	+		DDA3937_RS05435	0.78	+1.1
1,215,267	+		DDA3937_RS05435	0.78	-0.9
1,215,267	+		DDA3937_RS05435	0.78	-0.5
1,215,268	-		DDA3937_RS05435	0.78	+4.9
1,215,268	-		DDA3937_RS05435	0.78	+0.7
1,215,279	+		DDA3937_RS05435	0.79	-1.9
1,215,279	+		DDA3937_RS05435	0.79	-0.3
1,215,279	+		DDA3937_RS05435	0.79	+0.2
1,215,280	-		DDA3937_RS05435	0.80	+2.7
1,215,280	-		DDA3937_RS05435	0.80	+0.4
1,215,280	-		DDA3937_RS05435	0.80	-0.1
1,215,287	+		DDA3937_RS05435	0.80	+0.3
1,215,287	+		DDA3937_RS05435	0.80	+0.0
1,215,381	+		DDA3937_RS05435	0.90	-1.3
1,215,496	-				-1.3
1,215,521	+				-0.8
1,215,521	+				+0.4
1,215,521	+				+0.1
1,215,521	+				-1.9
1,215,522	-				-0.3
1,215,522	-				-0.3
1,215,551	+				-0.8
1,215,552	-				+0.7
1,215,596	+				+0.7
1,215,596	+				-0.6
1,215,609	+				-2.2
1,215,609	+				-0.6
1,215,610	-				-1.1
1,215,763	-				+0.5
1,215,938	+		DDA3937_RS05440	0.23	+3.5
1,215,994	-		DDA3937_RS05440	0.28	+0.5
1,215,994	-		DDA3937_RS05440	0.28	+0.5
1,216,172	+		DDA3937_RS05440	0.44	+3.4
1,216,173	-		DDA3937_RS05440	0.44	-0.5
1,216,173	-		DDA3937_RS05440	0.44	-0.3
1,216,173	-		DDA3937_RS05440	0.44	+0.4
1,216,173	-		DDA3937_RS05440	0.44	+0.2
1,216,220	+		DDA3937_RS05440	0.49	-0.8
1,216,221	-		DDA3937_RS05440	0.49	-1.1
1,216,268	+		DDA3937_RS05440	0.53	-3.1
1,216,268	+		DDA3937_RS05440	0.53	+2.8
1,216,268	+		DDA3937_RS05440	0.53	+0.1
1,216,269	-		DDA3937_RS05440	0.53	-0.5
1,216,269	-		DDA3937_RS05440	0.53	-0.1
1,216,269	-		DDA3937_RS05440	0.53	-0.8
1,216,269	-		DDA3937_RS05440	0.53	-1.8
1,216,325	+		DDA3937_RS05440	0.58	-0.3
1,216,340	+		DDA3937_RS05440	0.59	+0.1
1,216,340	+		DDA3937_RS05440	0.59	-0.7
1,216,340	+		DDA3937_RS05440	0.59	-1.0
1,216,340	+		DDA3937_RS05440	0.59	-1.1
1,216,340	+		DDA3937_RS05440	0.59	-0.3
1,216,341	-		DDA3937_RS05440	0.59	-1.1
1,216,341	-				-0.3
1,216,509	-		DDA3937_RS05440	0.75	-0.2
1,216,589	-		DDA3937_RS05440	0.82	-0.2
1,216,655	+		DDA3937_RS05440	0.88	-2.2
1,216,655	+		DDA3937_RS05440	0.88	+0.6
1,216,655	+		DDA3937_RS05440	0.88	-1.6
1,216,655	+		DDA3937_RS05440	0.88	+0.1
1,216,656	-		DDA3937_RS05440	0.88	+0.1
1,216,656	-		DDA3937_RS05440	0.88	-0.5
1,216,656	-		DDA3937_RS05440	0.88	-1.0
1,216,656	-		DDA3937_RS05440	0.88	-1.3
1,216,656	-		DDA3937_RS05440	0.88	+0.5
1,216,656	-		DDA3937_RS05440	0.88	-0.3
1,216,656	-		DDA3937_RS05440	0.88	+0.5
1,216,657	+		DDA3937_RS05440	0.88	-0.1
1,216,657	+		DDA3937_RS05440	0.88	+0.4
1,216,657	+		DDA3937_RS05440	0.88	+1.5
1,216,657	+		DDA3937_RS05440	0.88	-0.9
1,216,658	-		DDA3937_RS05440	0.88	+0.3
1,216,658	-		DDA3937_RS05440	0.88	+1.5
1,216,658	-		DDA3937_RS05440	0.88	+0.2
1,216,658	-		DDA3937_RS05440	0.88	-1.2
1,216,658	-		DDA3937_RS05440	0.88	-0.3
1,216,658	-		DDA3937_RS05440	0.88	-1.8
1,216,658	-		DDA3937_RS05440	0.88	-0.1
1,216,680	+				-1.5
1,216,680	+				+0.5
1,216,681	-				-0.1
1,216,681	-				-1.8
1,216,681	-				+1.2
1,216,681	-				+0.0
1,216,681	-				-0.3
1,216,681	-				-0.4
1,216,705	+				-1.6
1,216,705	+				-1.3
1,216,811	-				-0.7
1,216,811	-				-1.0
1,216,811	-				+0.9
1,216,837	-				+0.5
1,216,859	-				+1.6
1,216,872	-				+2.6
1,216,877	+				+0.0
1,216,878	-				+2.1
1,216,882	-				+0.2
1,216,948	+				-1.1
1,216,948	+				-2.1
1,216,948	+				+0.4
1,216,948	+				+1.4
1,216,948	+				-0.7
1,216,949	-				-0.7
1,216,949	-				+0.1
1,216,949	-				-0.8
1,216,949	-				-0.1
1,216,949	-				-0.9
1,216,949	-				+0.0
1,216,949	-				-0.3
1,216,951	-				-0.5
1,216,969	+				-1.3
1,217,006	-				+1.4
1,217,039	+				-0.1
1,217,100	-				-1.1
1,217,100	-				+0.2
1,217,194	+				+1.2
1,217,194	+				-0.2
1,217,194	+				-3.0
1,217,194	+				-2.4
1,217,194	+				-2.6
1,217,194	+				-0.4
1,217,194	+				-1.6
1,217,194	+				+0.1
1,217,194	+				+1.3
1,217,194	+				-0.9
1,217,194	+				-0.8
1,217,194	+				+2.2
1,217,194	+				-0.6
1,217,194	+				-1.0
1,217,195	-				-1.2
1,217,195	-				+0.2
1,217,195	-				+0.7
1,217,195	-				-0.7
1,217,195	-				-1.4
1,217,195	-				-1.1
1,217,195	-				-1.8
1,217,195	-				-0.0
1,217,195	-				+0.9
1,217,195	-				-1.2
1,217,195	-				-0.7
1,217,195	-				+0.2
1,217,195	-				-0.9
1,217,195	-				-2.2
1,217,195	-				-1.5
1,217,195	-				+0.6
1,217,195	-				+0.1
1,217,195	-				-0.4
1,217,195	-				+1.1
1,217,195	-				-0.7
1,217,195	-				-0.0
1,217,198	+				-0.1
1,217,198	+				+0.6
1,217,198	+				-2.8
1,217,198	+				-0.1
1,217,198	+				-0.1
1,217,198	+				-1.6
1,217,198	+				-0.1
1,217,198	+				-2.1
1,217,198	+				-0.5
1,217,198	+				-0.2
1,217,198	+				-0.1
1,217,198	+				+0.1
1,217,198	+				-0.0
1,217,198	+				-0.6
1,217,198	+				+0.3
1,217,198	+				-0.8
1,217,198	+				+0.3
1,217,198	+				-1.0
1,217,198	+				-0.2
1,217,199	-				+1.1
1,217,199	-				-0.1
1,217,199	-				-0.2
1,217,199	-				+0.5
1,217,199	-				+1.0
1,217,199	-				+0.5
1,217,199	-				-1.7
1,217,199	-				+0.7
1,217,199	-				-0.1
1,217,199	-				+2.2
1,217,199	-				+0.3
1,217,199	-				+0.6
1,217,199	-				-0.4
1,217,199	-				-0.6
1,217,199	-				-0.5
1,217,199	-				-0.1
1,217,199	-				-2.8
1,217,212	+				-0.6
1,217,258	-				-1.9
1,217,280	-				+0.3
1,217,466	+		DDA3937_RS05445	0.20	+0.2
1,217,467	-				-0.8
1,217,467	-		DDA3937_RS05445	0.20	-0.1
1,217,467	-		DDA3937_RS05445	0.20	-1.6
1,217,571	+		DDA3937_RS05445	0.28	-0.2
1,217,571	+		DDA3937_RS05445	0.28	-0.2
1,217,572	-		DDA3937_RS05445	0.28	-0.0
1,217,572	-		DDA3937_RS05445	0.28	-0.5
1,217,573	+		DDA3937_RS05445	0.28	+0.5
1,217,573	+		DDA3937_RS05445	0.28	+0.6
1,217,573	+		DDA3937_RS05445	0.28	-0.0
1,217,583	+		DDA3937_RS05445	0.29	-0.3
1,217,583	+		DDA3937_RS05445	0.29	-0.4
1,217,584	-				-0.8
1,217,584	-		DDA3937_RS05445	0.29	-2.1
1,217,613	+		DDA3937_RS05445	0.31	-1.4
1,217,645	+		DDA3937_RS05445	0.34	+0.3
1,217,740	-		DDA3937_RS05445	0.41	+0.2