Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS05330

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS05325 and DDA3937_RS05330 are separated by 443 nucleotidesDDA3937_RS05330 and DDA3937_RS05335 are separated by 109 nucleotides DDA3937_RS05325: DDA3937_RS05325 - SpoIIE family protein phosphatase, at 1,185,930 to 1,187,165 _RS05325 DDA3937_RS05330: DDA3937_RS05330 - hypothetical protein, at 1,187,609 to 1,188,205 _RS05330 DDA3937_RS05335: DDA3937_RS05335 - LysR family transcriptional regulator, at 1,188,315 to 1,189,196 _RS05335 Position (kb) 1187 1188 1189Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7at 1186.687 kb on + strand, within DDA3937_RS05325at 1186.687 kb on + strand, within DDA3937_RS05325at 1186.688 kb on - strand, within DDA3937_RS05325at 1186.688 kb on - strand, within DDA3937_RS05325at 1186.688 kb on - strand, within DDA3937_RS05325at 1186.693 kb on - strandat 1186.694 kb on + strandat 1186.694 kb on + strand, within DDA3937_RS05325at 1186.694 kb on + strand, within DDA3937_RS05325at 1186.694 kb on + strand, within DDA3937_RS05325at 1186.694 kb on + strand, within DDA3937_RS05325at 1186.695 kb on - strand, within DDA3937_RS05325at 1186.695 kb on - strand, within DDA3937_RS05325at 1186.701 kb on + strand, within DDA3937_RS05325at 1186.701 kb on + strand, within DDA3937_RS05325at 1186.702 kb on - strand, within DDA3937_RS05325at 1186.702 kb on - strand, within DDA3937_RS05325at 1186.796 kb on + strand, within DDA3937_RS05325at 1186.796 kb on + strand, within DDA3937_RS05325at 1186.796 kb on + strand, within DDA3937_RS05325at 1186.797 kb on - strand, within DDA3937_RS05325at 1186.797 kb on - strand, within DDA3937_RS05325at 1186.892 kb on + strand, within DDA3937_RS05325at 1186.892 kb on + strand, within DDA3937_RS05325at 1186.892 kb on + strand, within DDA3937_RS05325at 1186.893 kb on - strand, within DDA3937_RS05325at 1186.924 kb on + strand, within DDA3937_RS05325at 1186.925 kb on - strand, within DDA3937_RS05325at 1186.939 kb on + strand, within DDA3937_RS05325at 1186.940 kb on - strandat 1187.052 kb on + strandat 1187.052 kb on + strandat 1187.053 kb on - strandat 1187.063 kb on + strandat 1187.096 kb on + strandat 1187.096 kb on + strandat 1187.133 kb on + strandat 1187.187 kb on + strandat 1187.188 kb on - strandat 1187.212 kb on + strandat 1187.213 kb on - strandat 1187.263 kb on + strandat 1187.264 kb on - strandat 1187.281 kb on + strandat 1187.281 kb on + strandat 1187.282 kb on - strandat 1187.285 kb on + strandat 1187.286 kb on - strandat 1187.286 kb on - strandat 1187.334 kb on - strandat 1187.358 kb on + strandat 1187.359 kb on - strandat 1187.359 kb on - strandat 1187.359 kb on - strandat 1187.369 kb on + strandat 1187.369 kb on + strandat 1187.369 kb on + strandat 1187.369 kb on + strandat 1187.369 kb on + strandat 1187.370 kb on - strandat 1187.370 kb on - strandat 1187.385 kb on - strandat 1187.385 kb on - strandat 1187.445 kb on - strandat 1187.445 kb on - strandat 1187.479 kb on + strandat 1187.495 kb on + strandat 1187.496 kb on - strandat 1187.554 kb on + strandat 1187.579 kb on + strandat 1187.579 kb on + strandat 1187.580 kb on - strandat 1187.641 kb on + strandat 1187.641 kb on + strandat 1187.641 kb on + strandat 1187.642 kb on - strandat 1187.642 kb on - strandat 1187.642 kb on - strandat 1187.666 kb on + strandat 1187.666 kb on + strandat 1187.666 kb on + strandat 1187.667 kb on - strandat 1187.678 kb on - strand, within DDA3937_RS05330at 1187.678 kb on - strand, within DDA3937_RS05330at 1187.729 kb on - strand, within DDA3937_RS05330at 1187.769 kb on + strand, within DDA3937_RS05330at 1187.770 kb on - strandat 1187.773 kb on + strand, within DDA3937_RS05330at 1187.803 kb on + strand, within DDA3937_RS05330at 1187.803 kb on + strand, within DDA3937_RS05330at 1187.804 kb on - strand, within DDA3937_RS05330at 1187.806 kb on + strand, within DDA3937_RS05330at 1187.806 kb on + strand, within DDA3937_RS05330at 1187.807 kb on - strand, within DDA3937_RS05330at 1187.807 kb on - strand, within DDA3937_RS05330at 1187.807 kb on - strand, within DDA3937_RS05330at 1187.807 kb on - strand, within DDA3937_RS05330at 1187.807 kb on - strand, within DDA3937_RS05330at 1187.807 kb on - strand, within DDA3937_RS05330at 1187.807 kb on - strand, within DDA3937_RS05330at 1187.828 kb on - strand, within DDA3937_RS05330at 1187.828 kb on - strand, within DDA3937_RS05330at 1187.842 kb on + strand, within DDA3937_RS05330at 1187.842 kb on + strand, within DDA3937_RS05330at 1187.843 kb on - strand, within DDA3937_RS05330at 1187.843 kb on - strand, within DDA3937_RS05330at 1187.851 kb on + strand, within DDA3937_RS05330at 1187.925 kb on - strand, within DDA3937_RS05330at 1187.981 kb on - strand, within DDA3937_RS05330at 1187.981 kb on - strand, within DDA3937_RS05330at 1187.981 kb on - strand, within DDA3937_RS05330at 1187.985 kb on + strand, within DDA3937_RS05330at 1187.985 kb on + strand, within DDA3937_RS05330at 1187.985 kb on + strand, within DDA3937_RS05330at 1187.985 kb on + strand, within DDA3937_RS05330at 1187.986 kb on - strand, within DDA3937_RS05330at 1187.986 kb on - strand, within DDA3937_RS05330at 1187.986 kb on - strand, within DDA3937_RS05330at 1187.986 kb on - strand, within DDA3937_RS05330at 1187.986 kb on - strand, within DDA3937_RS05330at 1187.986 kb on - strand, within DDA3937_RS05330at 1188.001 kb on + strand, within DDA3937_RS05330at 1188.001 kb on + strand, within DDA3937_RS05330at 1188.001 kb on + strand, within DDA3937_RS05330at 1188.001 kb on + strand, within DDA3937_RS05330at 1188.002 kb on - strand, within DDA3937_RS05330at 1188.005 kb on - strand, within DDA3937_RS05330at 1188.068 kb on + strand, within DDA3937_RS05330at 1188.068 kb on + strand, within DDA3937_RS05330at 1188.071 kb on - strand, within DDA3937_RS05330at 1188.081 kb on + strand, within DDA3937_RS05330at 1188.081 kb on + strand, within DDA3937_RS05330at 1188.081 kb on + strand, within DDA3937_RS05330at 1188.081 kb on + strand, within DDA3937_RS05330at 1188.081 kb on + strand, within DDA3937_RS05330at 1188.082 kb on - strand, within DDA3937_RS05330at 1188.082 kb on - strand, within DDA3937_RS05330at 1188.082 kb on - strand, within DDA3937_RS05330at 1188.082 kb on - strand, within DDA3937_RS05330at 1188.082 kb on - strand, within DDA3937_RS05330at 1188.082 kb on - strand, within DDA3937_RS05330at 1188.082 kb on - strand, within DDA3937_RS05330at 1188.083 kb on + strand, within DDA3937_RS05330at 1188.084 kb on - strand, within DDA3937_RS05330at 1188.084 kb on - strand, within DDA3937_RS05330at 1188.084 kb on - strand, within DDA3937_RS05330at 1188.084 kb on - strand, within DDA3937_RS05330at 1188.084 kb on - strand, within DDA3937_RS05330at 1188.085 kb on + strand, within DDA3937_RS05330at 1188.085 kb on + strand, within DDA3937_RS05330at 1188.086 kb on - strand, within DDA3937_RS05330at 1188.210 kb on + strandat 1188.279 kb on + strandat 1188.280 kb on - strandat 1188.362 kb on + strandat 1188.392 kb on + strandat 1188.504 kb on + strand, within DDA3937_RS05335at 1188.530 kb on + strand, within DDA3937_RS05335at 1188.618 kb on + strand, within DDA3937_RS05335at 1188.623 kb on + strand, within DDA3937_RS05335at 1188.716 kb on + strand, within DDA3937_RS05335at 1188.873 kb on + strand, within DDA3937_RS05335at 1188.874 kb on - strand, within DDA3937_RS05335at 1188.874 kb on - strand, within DDA3937_RS05335at 1188.881 kb on + strand, within DDA3937_RS05335at 1188.882 kb on - strand, within DDA3937_RS05335at 1188.882 kb on - strand, within DDA3937_RS05335at 1188.882 kb on - strand, within DDA3937_RS05335at 1188.932 kb on + strand, within DDA3937_RS05335at 1188.934 kb on + strand, within DDA3937_RS05335at 1189.053 kb on + strand, within DDA3937_RS05335at 1189.063 kb on + strand, within DDA3937_RS05335at 1189.064 kb on - strand, within DDA3937_RS05335at 1189.064 kb on - strand, within DDA3937_RS05335at 1189.064 kb on - strand, within DDA3937_RS05335

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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1,186,687 + DDA3937_RS05325 0.61 +0.2
1,186,687 + DDA3937_RS05325 0.61 -0.1
1,186,688 - DDA3937_RS05325 0.61 +0.2
1,186,688 - DDA3937_RS05325 0.61 -0.2
1,186,688 - DDA3937_RS05325 0.61 +2.3
1,186,693 - +1.2
1,186,694 + -1.1
1,186,694 + DDA3937_RS05325 0.62 -1.3
1,186,694 + DDA3937_RS05325 0.62 -1.0
1,186,694 + DDA3937_RS05325 0.62 -1.3
1,186,694 + DDA3937_RS05325 0.62 -1.6
1,186,695 - DDA3937_RS05325 0.62 -0.6
1,186,695 - DDA3937_RS05325 0.62 -0.6
1,186,701 + DDA3937_RS05325 0.62 -0.3
1,186,701 + DDA3937_RS05325 0.62 -1.3
1,186,702 - DDA3937_RS05325 0.62 -1.1
1,186,702 - DDA3937_RS05325 0.62 -1.2
1,186,796 + DDA3937_RS05325 0.70 +0.1
1,186,796 + DDA3937_RS05325 0.70 -1.6
1,186,796 + DDA3937_RS05325 0.70 -1.1
1,186,797 - DDA3937_RS05325 0.70 +0.1
1,186,797 - DDA3937_RS05325 0.70 -1.0
1,186,892 + DDA3937_RS05325 0.78 -0.1
1,186,892 + DDA3937_RS05325 0.78 -0.8
1,186,892 + DDA3937_RS05325 0.78 +0.7
1,186,893 - DDA3937_RS05325 0.78 +1.2
1,186,924 + DDA3937_RS05325 0.80 +0.2
1,186,925 - DDA3937_RS05325 0.81 -0.6
1,186,939 + DDA3937_RS05325 0.82 -0.5
1,186,940 - +0.2
1,187,052 + -0.2
1,187,052 + +1.8
1,187,053 - -1.6
1,187,063 + +0.7
1,187,096 + -1.5
1,187,096 + +0.5
1,187,133 + +0.0
1,187,187 + +0.0
1,187,188 - -0.9
1,187,212 + +0.0
1,187,213 - +0.2
1,187,263 + -0.9
1,187,264 - -0.3
1,187,281 + -2.9
1,187,281 + -1.5
1,187,282 - -0.2
1,187,285 + +1.0
1,187,286 - +0.7
1,187,286 - -0.1
1,187,334 - -1.7
1,187,358 + +0.5
1,187,359 - +0.2
1,187,359 - -0.3
1,187,359 - -0.3
1,187,369 + -0.3
1,187,369 + +0.2
1,187,369 + +0.1
1,187,369 + +2.0
1,187,369 + +0.2
1,187,370 - -0.8
1,187,370 - +1.4
1,187,385 - +0.9
1,187,385 - -1.4
1,187,445 - +1.2
1,187,445 - +0.0
1,187,479 + -0.1
1,187,495 + -1.4
1,187,496 - +0.2
1,187,554 + -0.1
1,187,579 + -0.2
1,187,579 + -0.8
1,187,580 - -1.6
1,187,641 + -2.2
1,187,641 + -0.2
1,187,641 + -0.5
1,187,642 - +0.1
1,187,642 - -0.3
1,187,642 - +0.1
1,187,666 + -0.0
1,187,666 + -2.1
1,187,666 + +0.4
1,187,667 - -0.6
1,187,678 - DDA3937_RS05330 0.12 -1.1
1,187,678 - DDA3937_RS05330 0.12 +0.9
1,187,729 - DDA3937_RS05330 0.20 -2.2
1,187,769 + DDA3937_RS05330 0.27 +0.1
1,187,770 - -0.3
1,187,773 + DDA3937_RS05330 0.27 +0.4
1,187,803 + DDA3937_RS05330 0.32 +6.8
1,187,803 + DDA3937_RS05330 0.32 -1.8
1,187,804 - DDA3937_RS05330 0.33 -0.3
1,187,806 + DDA3937_RS05330 0.33 -1.9
1,187,806 + DDA3937_RS05330 0.33 -0.8
1,187,807 - DDA3937_RS05330 0.33 +0.4
1,187,807 - DDA3937_RS05330 0.33 -1.2
1,187,807 - DDA3937_RS05330 0.33 +0.6
1,187,807 - DDA3937_RS05330 0.33 -1.2
1,187,807 - DDA3937_RS05330 0.33 +0.9
1,187,807 - DDA3937_RS05330 0.33 +1.7
1,187,807 - DDA3937_RS05330 0.33 -0.2
1,187,828 - DDA3937_RS05330 0.37 -0.8
1,187,828 - DDA3937_RS05330 0.37 +0.0
1,187,842 + DDA3937_RS05330 0.39 +1.3
1,187,842 + DDA3937_RS05330 0.39 -1.3
1,187,843 - DDA3937_RS05330 0.39 -0.6
1,187,843 - DDA3937_RS05330 0.39 -0.3
1,187,851 + DDA3937_RS05330 0.41 +0.1
1,187,925 - DDA3937_RS05330 0.53 -1.5
1,187,981 - DDA3937_RS05330 0.62 -0.1
1,187,981 - DDA3937_RS05330 0.62 +3.9
1,187,981 - DDA3937_RS05330 0.62 -2.2
1,187,985 + DDA3937_RS05330 0.63 -0.0
1,187,985 + DDA3937_RS05330 0.63 +0.1
1,187,985 + DDA3937_RS05330 0.63 -0.1
1,187,985 + DDA3937_RS05330 0.63 -1.3
1,187,986 - DDA3937_RS05330 0.63 +0.5
1,187,986 - DDA3937_RS05330 0.63 -2.3
1,187,986 - DDA3937_RS05330 0.63 +2.1
1,187,986 - DDA3937_RS05330 0.63 -2.1
1,187,986 - DDA3937_RS05330 0.63 +0.8
1,187,986 - DDA3937_RS05330 0.63 +2.0
1,188,001 + DDA3937_RS05330 0.66 +0.7
1,188,001 + DDA3937_RS05330 0.66 -1.2
1,188,001 + DDA3937_RS05330 0.66 +0.9
1,188,001 + DDA3937_RS05330 0.66 +0.7
1,188,002 - DDA3937_RS05330 0.66 -2.1
1,188,005 - DDA3937_RS05330 0.66 -0.2
1,188,068 + DDA3937_RS05330 0.77 -0.4
1,188,068 + DDA3937_RS05330 0.77 -1.1
1,188,071 - DDA3937_RS05330 0.77 -0.4
1,188,081 + DDA3937_RS05330 0.79 +0.7
1,188,081 + DDA3937_RS05330 0.79 +2.5
1,188,081 + DDA3937_RS05330 0.79 -1.5
1,188,081 + DDA3937_RS05330 0.79 +0.1
1,188,081 + DDA3937_RS05330 0.79 -0.2
1,188,082 - DDA3937_RS05330 0.79 +1.8
1,188,082 - DDA3937_RS05330 0.79 -0.2
1,188,082 - DDA3937_RS05330 0.79 +0.7
1,188,082 - DDA3937_RS05330 0.79 -0.3
1,188,082 - DDA3937_RS05330 0.79 -0.9
1,188,082 - DDA3937_RS05330 0.79 -1.9
1,188,082 - DDA3937_RS05330 0.79 +0.6
1,188,083 + DDA3937_RS05330 0.79 -1.1
1,188,084 - DDA3937_RS05330 0.80 -2.5
1,188,084 - DDA3937_RS05330 0.80 -0.0
1,188,084 - DDA3937_RS05330 0.80 -0.1
1,188,084 - DDA3937_RS05330 0.80 -1.8
1,188,084 - DDA3937_RS05330 0.80 -0.8
1,188,085 + DDA3937_RS05330 0.80 -3.1
1,188,085 + DDA3937_RS05330 0.80 -0.1
1,188,086 - DDA3937_RS05330 0.80 -1.9
1,188,210 + +0.5
1,188,279 + +0.1
1,188,280 - +1.2
1,188,362 + +4.6
1,188,392 + +0.0
1,188,504 + DDA3937_RS05335 0.21 -0.1
1,188,530 + DDA3937_RS05335 0.24 -1.2
1,188,618 + DDA3937_RS05335 0.34 +0.8
1,188,623 + DDA3937_RS05335 0.35 -0.0
1,188,716 + DDA3937_RS05335 0.45 +0.7
1,188,873 + DDA3937_RS05335 0.63 -0.7
1,188,874 - DDA3937_RS05335 0.63 +0.9
1,188,874 - DDA3937_RS05335 0.63 -0.6
1,188,881 + DDA3937_RS05335 0.64 -0.1
1,188,882 - DDA3937_RS05335 0.64 +0.5
1,188,882 - DDA3937_RS05335 0.64 +0.9
1,188,882 - DDA3937_RS05335 0.64 -1.8
1,188,932 + DDA3937_RS05335 0.70 -0.3
1,188,934 + DDA3937_RS05335 0.70 +0.3
1,189,053 + DDA3937_RS05335 0.84 -0.6
1,189,063 + DDA3937_RS05335 0.85 +0.6
1,189,064 - DDA3937_RS05335 0.85 +0.5
1,189,064 - DDA3937_RS05335 0.85 -1.3
1,189,064 - DDA3937_RS05335 0.85 -0.3

Or see this region's nucleotide sequence