Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS05240

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,168,431	-				-0.8
1,168,470	-				+1.1
1,168,470	-				-0.8
1,168,493	+				+0.1
1,168,493	+				-1.3
1,168,493	+				-0.3
1,168,505	+				-1.0
1,168,506	-				-0.4
1,168,547	+				-0.4
1,168,552	+				-2.2
1,168,552	+				-0.1
1,168,552	+				-2.2
1,168,552	+				-0.9
1,168,553	-				+0.2
1,168,553	-				+0.7
1,168,553	-				-0.8
1,168,553	-				-1.7
1,168,553	-				-1.1
1,168,553	-				-1.6
1,168,553	-				-0.8
1,168,571	+				-0.5
1,168,617	+				-1.0
1,168,617	+				-2.3
1,168,618	-				-0.5
1,168,618	-				+0.7
1,168,618	-				-0.1
1,168,618	-				-1.1
1,168,618	-				-0.4
1,168,661	+				-0.4
1,168,661	+				+0.4
1,168,662	-				+0.6
1,168,662	-				+0.1
1,168,668	+				+1.2
1,168,668	+				-1.4
1,168,668	+				-0.5
1,168,669	-				-0.4
1,168,669	-				+0.4
1,168,669	-				+0.2
1,168,672	+				-0.0
1,168,673	-				-0.9
1,168,673	-				-0.7
1,168,697	-				+0.2
1,168,769	+		DDA3937_RS05235	0.14	+1.3
1,168,769	+		DDA3937_RS05235	0.14	+1.4
1,168,769	+		DDA3937_RS05235	0.14	+1.4
1,168,769	+		DDA3937_RS05235	0.14	-0.8
1,168,769	+		DDA3937_RS05235	0.14	+0.2
1,168,769	+		DDA3937_RS05235	0.14	-0.7
1,168,807	+		DDA3937_RS05235	0.20	+0.2
1,168,807	+				+0.6
1,168,807	+		DDA3937_RS05235	0.20	+0.8
1,168,808	-		DDA3937_RS05235	0.20	-0.1
1,168,808	-		DDA3937_RS05235	0.20	+0.4
1,168,809	-		DDA3937_RS05235	0.20	-1.8
1,168,890	+		DDA3937_RS05235	0.31	+0.8
1,168,890	+		DDA3937_RS05235	0.31	-0.9
1,168,890	+		DDA3937_RS05235	0.31	-1.5
1,168,891	-		DDA3937_RS05235	0.31	+0.4
1,168,891	-		DDA3937_RS05235	0.31	-1.1
1,168,977	+		DDA3937_RS05235	0.43	+0.5
1,168,978	-		DDA3937_RS05235	0.44	+0.2
1,168,978	-		DDA3937_RS05235	0.44	-1.4
1,168,982	-		DDA3937_RS05235	0.44	-1.1
1,168,983	+		DDA3937_RS05235	0.44	+1.2
1,169,027	-		DDA3937_RS05235	0.50	-0.6
1,169,027	-		DDA3937_RS05235	0.50	+0.0
1,169,040	+		DDA3937_RS05235	0.52	+0.5
1,169,040	+		DDA3937_RS05235	0.52	-0.6
1,169,041	-		DDA3937_RS05235	0.52	+0.7
1,169,043	+		DDA3937_RS05235	0.53	+0.1
1,169,043	+		DDA3937_RS05235	0.53	+1.2
1,169,043	+		DDA3937_RS05235	0.53	-1.1
1,169,043	+		DDA3937_RS05235	0.53	-0.4
1,169,044	-		DDA3937_RS05235	0.53	-0.7
1,169,044	-		DDA3937_RS05235	0.53	-1.9
1,169,044	-		DDA3937_RS05235	0.53	+2.4
1,169,044	-		DDA3937_RS05235	0.53	-1.0
1,169,044	-		DDA3937_RS05235	0.53	-1.4
1,169,044	-		DDA3937_RS05235	0.53	-1.9
1,169,078	+		DDA3937_RS05235	0.58	-0.2
1,169,078	+		DDA3937_RS05235	0.58	-0.1
1,169,078	+		DDA3937_RS05235	0.58	-0.4
1,169,079	-		DDA3937_RS05235	0.58	+1.5
1,169,085	+		DDA3937_RS05235	0.59	-0.0
1,169,119	+		DDA3937_RS05235	0.63	+1.2
1,169,119	+		DDA3937_RS05235	0.63	-1.4
1,169,134	+		DDA3937_RS05235	0.65	+0.9
1,169,135	-		DDA3937_RS05235	0.66	+0.4
1,169,135	-		DDA3937_RS05235	0.66	+0.2
1,169,150	+		DDA3937_RS05235	0.68	+1.0
1,169,188	+		DDA3937_RS05235	0.73	+3.6
1,169,189	-		DDA3937_RS05235	0.73	+1.7
1,169,189	-		DDA3937_RS05235	0.73	+0.7
1,169,189	-		DDA3937_RS05235	0.73	+0.6
1,169,189	-		DDA3937_RS05235	0.73	-0.5
1,169,192	+		DDA3937_RS05235	0.74	+0.6
1,169,192	+		DDA3937_RS05235	0.74	+0.0
1,169,192	+		DDA3937_RS05235	0.74	-1.6
1,169,192	+		DDA3937_RS05235	0.74	-0.4
1,169,193	-		DDA3937_RS05235	0.74	+0.9
1,169,193	-		DDA3937_RS05235	0.74	-0.5
1,169,193	-		DDA3937_RS05235	0.74	-1.8
1,169,193	-		DDA3937_RS05235	0.74	+1.0
1,169,210	-		DDA3937_RS05235	0.76	-1.6
1,169,218	+		DDA3937_RS05235	0.77	-1.9
1,169,218	+		DDA3937_RS05235	0.77	+0.3
1,169,219	-		DDA3937_RS05235	0.77	-2.2
1,169,244	-		DDA3937_RS05235	0.81	+3.7
1,169,244	-		DDA3937_RS05235	0.81	-0.5
1,169,246	+		DDA3937_RS05235	0.81	+0.2
1,169,246	+		DDA3937_RS05235	0.81	-0.1
1,169,247	-		DDA3937_RS05235	0.81	-0.3
1,169,247	-		DDA3937_RS05235	0.81	+0.7
1,169,247	-		DDA3937_RS05235	0.81	-1.8
1,169,258	+		DDA3937_RS05235	0.83	-0.2
1,169,313	-				-0.1
1,169,324	-				-0.2
1,169,362	+				+1.5
1,169,363	-				+0.9
1,169,363	-				+0.5
1,169,366	+				-1.9
1,169,367	-				-0.5
1,169,367	-				-0.1
1,169,367	-				+1.5
1,169,385	-				-0.9
1,169,394	-				+1.2
1,169,394	-				+1.2
1,169,402	+				+0.1
1,169,402	+				+0.1
1,169,403	-				-0.1
1,169,435	+				+0.1
1,169,436	-				-0.8
1,169,436	-				-0.4
1,169,436	-				+0.4
1,169,460	-				-0.2
1,169,480	+				+1.0
1,169,480	+				-0.4
1,169,480	+				+1.1
1,169,480	+				+0.6
1,169,481	-				-0.3
1,169,481	-				-1.3
1,169,481	-				-0.1
1,169,481	-				-1.6
1,169,481	-				+1.6
1,169,578	+		DDA3937_RS05240	0.22	-0.7
1,169,658	+		DDA3937_RS05240	0.33	-1.7
1,169,659	-		DDA3937_RS05240	0.33	-0.1
1,169,873	-		DDA3937_RS05240	0.62	-0.9
1,169,875	+		DDA3937_RS05240	0.63	+0.1
1,169,876	-		DDA3937_RS05240	0.63	-2.1
1,169,876	-		DDA3937_RS05240	0.63	-2.9
1,169,919	+		DDA3937_RS05240	0.69	-0.8
1,169,919	+		DDA3937_RS05240	0.69	+0.2
1,169,967	-		DDA3937_RS05240	0.75	-1.8
1,170,140	+				-1.1
1,170,140	+				+0.9
1,170,141	-				+1.0
1,170,143	+				+0.3
1,170,143	+				-0.1
1,170,143	+				+1.0
1,170,144	-				+0.2
1,170,144	-				+2.1
1,170,144	-				+1.3
1,170,245	+		DDA3937_RS05245	0.15	+1.7
1,170,245	+		DDA3937_RS05245	0.15	-0.5
1,170,245	+		DDA3937_RS05245	0.15	+0.6
1,170,264	+		DDA3937_RS05245	0.19	-0.2
1,170,325	-		DDA3937_RS05245	0.33	+1.7
1,170,350	+		DDA3937_RS05245	0.39	-0.8
1,170,366	+		DDA3937_RS05245	0.43	+0.1
1,170,366	+		DDA3937_RS05245	0.43	+0.1
1,170,367	-		DDA3937_RS05245	0.43	-2.0
1,170,448	-		DDA3937_RS05245	0.62	-0.2
1,170,448	-		DDA3937_RS05245	0.62	+1.5
1,170,490	+		DDA3937_RS05245	0.71	-2.9
1,170,491	-		DDA3937_RS05245	0.71	+0.5
1,170,563	-		DDA3937_RS05245	0.88	+0.4
1,170,563	-		DDA3937_RS05245	0.88	-1.3
1,170,605	+				+1.0
1,170,605	+				-1.1
1,170,606	-				-0.9
1,170,615	-				-0.5
1,170,615	-				-1.5
1,170,660	-				-2.0
1,170,681	-				+0.2
1,170,685	+				+2.0
1,170,686	-				-1.2
1,170,692	+				-3.3
1,170,692	+				-0.7
1,170,693	-				-1.7
1,170,693	-				-0.0
1,170,694	+				-2.8
1,170,694	+				-0.4
1,170,694	+				-1.0
1,170,695	-				-0.2
1,170,695	-				-0.2
1,170,695	-				-0.3
1,170,695	-				+0.4
1,170,695	-				+0.6
1,170,698	+				-0.4
1,170,699	-				-0.7
1,170,699	-				-0.7
1,170,789	+				-0.5
1,170,846	-				-0.3
1,170,846	-				+1.6
1,171,005	+		DDA3937_RS23505	0.24	-0.9
1,171,005	+		DDA3937_RS23505	0.24	-0.2
1,171,006	-				-0.4
1,171,024	+		DDA3937_RS23505	0.34	-0.7
1,171,025	-		DDA3937_RS23505	0.35	-1.4
1,171,037	+		DDA3937_RS23505	0.42	-0.4