Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS05065

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS05060 and DDA3937_RS05065 are separated by 50 nucleotidesDDA3937_RS05065 and DDA3937_RS05070 are separated by 53 nucleotides DDA3937_RS05060: DDA3937_RS05060 - 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM, at 1,130,213 to 1,131,313 _RS05060 DDA3937_RS05065: DDA3937_RS05065 - flap endonuclease Xni, at 1,131,364 to 1,132,125 _RS05065 DDA3937_RS05070: DDA3937_RS05070 - LOG family protein, at 1,132,179 to 1,133,543 _RS05070 Position (kb) 1131 1132 1133Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1130.389 kb on - strand, within DDA3937_RS05060at 1130.389 kb on - strand, within DDA3937_RS05060at 1130.389 kb on - strand, within DDA3937_RS05060at 1130.427 kb on + strand, within DDA3937_RS05060at 1130.428 kb on - strand, within DDA3937_RS05060at 1130.661 kb on + strand, within DDA3937_RS05060at 1130.661 kb on + strand, within DDA3937_RS05060at 1130.661 kb on + strand, within DDA3937_RS05060at 1130.661 kb on + strand, within DDA3937_RS05060at 1130.661 kb on + strand, within DDA3937_RS05060at 1130.661 kb on + strand, within DDA3937_RS05060at 1130.661 kb on + strand, within DDA3937_RS05060at 1130.661 kb on + strand, within DDA3937_RS05060at 1130.661 kb on + strand, within DDA3937_RS05060at 1130.662 kb on - strand, within DDA3937_RS05060at 1130.662 kb on - strand, within DDA3937_RS05060at 1130.662 kb on - strand, within DDA3937_RS05060at 1130.662 kb on - strand, within DDA3937_RS05060at 1130.662 kb on - strand, within DDA3937_RS05060at 1130.687 kb on + strand, within DDA3937_RS05060at 1130.687 kb on + strand, within DDA3937_RS05060at 1130.687 kb on + strand, within DDA3937_RS05060at 1130.688 kb on - strand, within DDA3937_RS05060at 1130.688 kb on - strand, within DDA3937_RS05060at 1130.696 kb on + strand, within DDA3937_RS05060at 1130.702 kb on + strand, within DDA3937_RS05060at 1130.703 kb on - strand, within DDA3937_RS05060at 1130.703 kb on - strand, within DDA3937_RS05060at 1130.711 kb on - strand, within DDA3937_RS05060at 1130.726 kb on + strand, within DDA3937_RS05060at 1130.726 kb on + strand, within DDA3937_RS05060at 1130.726 kb on + strand, within DDA3937_RS05060at 1130.726 kb on + strand, within DDA3937_RS05060at 1130.726 kb on + strand, within DDA3937_RS05060at 1130.726 kb on + strand, within DDA3937_RS05060at 1130.726 kb on + strand, within DDA3937_RS05060at 1130.726 kb on + strand, within DDA3937_RS05060at 1130.727 kb on - strand, within DDA3937_RS05060at 1130.727 kb on - strand, within DDA3937_RS05060at 1130.727 kb on - strand, within DDA3937_RS05060at 1130.727 kb on - strand, within DDA3937_RS05060at 1130.727 kb on - strand, within DDA3937_RS05060at 1130.727 kb on - strand, within DDA3937_RS05060at 1130.727 kb on - strand, within DDA3937_RS05060at 1130.727 kb on - strand, within DDA3937_RS05060at 1130.727 kb on - strand, within DDA3937_RS05060at 1130.727 kb on - strand, within DDA3937_RS05060at 1130.727 kb on - strand, within DDA3937_RS05060at 1130.727 kb on - strand, within DDA3937_RS05060at 1130.728 kb on + strand, within DDA3937_RS05060at 1130.803 kb on + strand, within DDA3937_RS05060at 1130.803 kb on + strand, within DDA3937_RS05060at 1130.803 kb on + strand, within DDA3937_RS05060at 1130.804 kb on - strand, within DDA3937_RS05060at 1130.852 kb on + strand, within DDA3937_RS05060at 1130.852 kb on + strand, within DDA3937_RS05060at 1130.853 kb on - strand, within DDA3937_RS05060at 1130.853 kb on - strand, within DDA3937_RS05060at 1130.853 kb on - strand, within DDA3937_RS05060at 1130.853 kb on - strand, within DDA3937_RS05060at 1130.891 kb on + strand, within DDA3937_RS05060at 1130.891 kb on + strand, within DDA3937_RS05060at 1130.891 kb on + strand, within DDA3937_RS05060at 1130.891 kb on + strand, within DDA3937_RS05060at 1130.892 kb on - strand, within DDA3937_RS05060at 1130.892 kb on - strand, within DDA3937_RS05060at 1130.892 kb on - strandat 1130.911 kb on + strand, within DDA3937_RS05060at 1130.912 kb on - strand, within DDA3937_RS05060at 1130.912 kb on - strand, within DDA3937_RS05060at 1130.912 kb on - strand, within DDA3937_RS05060at 1130.912 kb on - strand, within DDA3937_RS05060at 1131.022 kb on + strand, within DDA3937_RS05060at 1131.022 kb on + strand, within DDA3937_RS05060at 1131.022 kb on + strand, within DDA3937_RS05060at 1131.023 kb on - strand, within DDA3937_RS05060at 1131.023 kb on - strand, within DDA3937_RS05060at 1131.023 kb on - strand, within DDA3937_RS05060at 1131.023 kb on - strand, within DDA3937_RS05060at 1131.026 kb on + strand, within DDA3937_RS05060at 1131.026 kb on + strand, within DDA3937_RS05060at 1131.026 kb on + strand, within DDA3937_RS05060at 1131.043 kb on + strand, within DDA3937_RS05060at 1131.044 kb on - strand, within DDA3937_RS05060at 1131.062 kb on - strand, within DDA3937_RS05060at 1131.062 kb on - strand, within DDA3937_RS05060at 1131.274 kb on + strandat 1131.275 kb on - strandat 1131.275 kb on - strandat 1131.331 kb on + strandat 1131.332 kb on - strandat 1131.356 kb on - strandat 1131.385 kb on + strandat 1131.386 kb on - strandat 1131.386 kb on - strandat 1131.410 kb on - strandat 1131.515 kb on + strand, within DDA3937_RS05065at 1131.518 kb on - strand, within DDA3937_RS05065at 1131.547 kb on + strand, within DDA3937_RS05065at 1131.698 kb on + strand, within DDA3937_RS05065at 1131.699 kb on - strand, within DDA3937_RS05065at 1131.727 kb on + strand, within DDA3937_RS05065at 1131.727 kb on + strand, within DDA3937_RS05065at 1131.738 kb on - strand, within DDA3937_RS05065at 1131.929 kb on + strand, within DDA3937_RS05065at 1131.929 kb on + strand, within DDA3937_RS05065at 1131.929 kb on + strand, within DDA3937_RS05065at 1131.930 kb on - strand, within DDA3937_RS05065at 1131.930 kb on - strand, within DDA3937_RS05065at 1132.066 kb on + strandat 1132.067 kb on - strandat 1132.107 kb on + strandat 1132.107 kb on + strandat 1132.108 kb on - strandat 1132.117 kb on + strandat 1132.117 kb on + strandat 1132.117 kb on + strandat 1132.117 kb on + strandat 1132.117 kb on + strandat 1132.118 kb on - strandat 1132.118 kb on - strandat 1132.118 kb on - strandat 1132.118 kb on - strandat 1132.126 kb on - strandat 1132.133 kb on - strandat 1132.156 kb on + strandat 1132.157 kb on - strandat 1132.195 kb on + strandat 1132.207 kb on + strandat 1132.208 kb on - strandat 1132.229 kb on + strandat 1132.230 kb on - strandat 1132.289 kb on + strandat 1132.289 kb on + strandat 1132.304 kb on - strandat 1132.356 kb on + strand, within DDA3937_RS05070at 1132.356 kb on + strandat 1132.356 kb on + strand, within DDA3937_RS05070at 1132.357 kb on - strand, within DDA3937_RS05070at 1132.357 kb on - strand, within DDA3937_RS05070at 1132.357 kb on - strand, within DDA3937_RS05070at 1132.357 kb on - strand, within DDA3937_RS05070at 1132.504 kb on + strand, within DDA3937_RS05070at 1132.504 kb on + strand, within DDA3937_RS05070at 1132.504 kb on + strand, within DDA3937_RS05070at 1132.505 kb on - strand, within DDA3937_RS05070at 1132.505 kb on - strand, within DDA3937_RS05070at 1132.505 kb on - strand, within DDA3937_RS05070at 1132.505 kb on - strand, within DDA3937_RS05070at 1132.518 kb on - strand, within DDA3937_RS05070at 1132.600 kb on + strand, within DDA3937_RS05070at 1132.601 kb on - strand, within DDA3937_RS05070at 1132.601 kb on - strand, within DDA3937_RS05070at 1132.603 kb on + strand, within DDA3937_RS05070at 1132.604 kb on - strand, within DDA3937_RS05070at 1132.660 kb on + strand, within DDA3937_RS05070at 1132.661 kb on - strand, within DDA3937_RS05070at 1132.661 kb on - strand, within DDA3937_RS05070at 1132.661 kb on - strand, within DDA3937_RS05070at 1132.661 kb on - strand, within DDA3937_RS05070at 1132.691 kb on + strand, within DDA3937_RS05070at 1132.691 kb on + strand, within DDA3937_RS05070at 1132.692 kb on - strand, within DDA3937_RS05070at 1132.744 kb on + strand, within DDA3937_RS05070at 1132.744 kb on + strand, within DDA3937_RS05070at 1132.745 kb on - strand, within DDA3937_RS05070at 1132.745 kb on - strand, within DDA3937_RS05070at 1132.745 kb on - strand, within DDA3937_RS05070at 1132.784 kb on + strand, within DDA3937_RS05070at 1132.785 kb on - strand, within DDA3937_RS05070at 1132.785 kb on - strand, within DDA3937_RS05070at 1132.785 kb on - strand, within DDA3937_RS05070at 1132.785 kb on - strand, within DDA3937_RS05070at 1132.785 kb on - strand, within DDA3937_RS05070at 1132.785 kb on - strand, within DDA3937_RS05070at 1132.785 kb on - strand, within DDA3937_RS05070at 1132.845 kb on - strand, within DDA3937_RS05070at 1132.998 kb on - strand, within DDA3937_RS05070at 1133.017 kb on - strand, within DDA3937_RS05070at 1133.017 kb on - strand, within DDA3937_RS05070at 1133.047 kb on + strand, within DDA3937_RS05070at 1133.048 kb on - strand, within DDA3937_RS05070at 1133.054 kb on - strand, within DDA3937_RS05070

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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1,130,389 - DDA3937_RS05060 0.16 -1.4
1,130,389 - DDA3937_RS05060 0.16 +0.2
1,130,389 - DDA3937_RS05060 0.16 +1.2
1,130,427 + DDA3937_RS05060 0.19 +0.1
1,130,428 - DDA3937_RS05060 0.20 -0.1
1,130,661 + DDA3937_RS05060 0.41 -2.1
1,130,661 + DDA3937_RS05060 0.41 -0.3
1,130,661 + DDA3937_RS05060 0.41 -0.8
1,130,661 + DDA3937_RS05060 0.41 +0.2
1,130,661 + DDA3937_RS05060 0.41 +1.2
1,130,661 + DDA3937_RS05060 0.41 -0.7
1,130,661 + DDA3937_RS05060 0.41 +0.6
1,130,661 + DDA3937_RS05060 0.41 -0.6
1,130,661 + DDA3937_RS05060 0.41 +0.2
1,130,662 - DDA3937_RS05060 0.41 -1.4
1,130,662 - DDA3937_RS05060 0.41 -2.6
1,130,662 - DDA3937_RS05060 0.41 -1.0
1,130,662 - DDA3937_RS05060 0.41 +1.4
1,130,662 - DDA3937_RS05060 0.41 +0.1
1,130,687 + DDA3937_RS05060 0.43 -2.7
1,130,687 + DDA3937_RS05060 0.43 -0.6
1,130,687 + DDA3937_RS05060 0.43 -0.5
1,130,688 - DDA3937_RS05060 0.43 -0.9
1,130,688 - DDA3937_RS05060 0.43 +1.6
1,130,696 + DDA3937_RS05060 0.44 +0.2
1,130,702 + DDA3937_RS05060 0.44 -0.9
1,130,703 - DDA3937_RS05060 0.45 -1.8
1,130,703 - DDA3937_RS05060 0.45 +0.7
1,130,711 - DDA3937_RS05060 0.45 -2.9
1,130,726 + DDA3937_RS05060 0.47 +2.1
1,130,726 + DDA3937_RS05060 0.47 +1.4
1,130,726 + DDA3937_RS05060 0.47 -0.1
1,130,726 + DDA3937_RS05060 0.47 -2.5
1,130,726 + DDA3937_RS05060 0.47 -0.3
1,130,726 + DDA3937_RS05060 0.47 +0.1
1,130,726 + DDA3937_RS05060 0.47 -1.9
1,130,726 + DDA3937_RS05060 0.47 +0.3
1,130,727 - DDA3937_RS05060 0.47 -0.8
1,130,727 - DDA3937_RS05060 0.47 -1.9
1,130,727 - DDA3937_RS05060 0.47 -1.1
1,130,727 - DDA3937_RS05060 0.47 -0.4
1,130,727 - DDA3937_RS05060 0.47 -1.8
1,130,727 - DDA3937_RS05060 0.47 -1.9
1,130,727 - DDA3937_RS05060 0.47 +0.2
1,130,727 - DDA3937_RS05060 0.47 +0.2
1,130,727 - DDA3937_RS05060 0.47 +0.6
1,130,727 - DDA3937_RS05060 0.47 +0.1
1,130,727 - DDA3937_RS05060 0.47 -1.4
1,130,727 - DDA3937_RS05060 0.47 +3.3
1,130,728 + DDA3937_RS05060 0.47 +0.0
1,130,803 + DDA3937_RS05060 0.54 -0.1
1,130,803 + DDA3937_RS05060 0.54 -0.1
1,130,803 + DDA3937_RS05060 0.54 -0.0
1,130,804 - DDA3937_RS05060 0.54 +1.2
1,130,852 + DDA3937_RS05060 0.58 -0.8
1,130,852 + DDA3937_RS05060 0.58 -2.1
1,130,853 - DDA3937_RS05060 0.58 +2.1
1,130,853 - DDA3937_RS05060 0.58 -2.1
1,130,853 - DDA3937_RS05060 0.58 -0.7
1,130,853 - DDA3937_RS05060 0.58 -0.9
1,130,891 + DDA3937_RS05060 0.62 -0.0
1,130,891 + DDA3937_RS05060 0.62 +0.4
1,130,891 + DDA3937_RS05060 0.62 -0.4
1,130,891 + DDA3937_RS05060 0.62 +1.0
1,130,892 - DDA3937_RS05060 0.62 +0.5
1,130,892 - DDA3937_RS05060 0.62 +0.5
1,130,892 - -0.4
1,130,911 + DDA3937_RS05060 0.63 -0.0
1,130,912 - DDA3937_RS05060 0.63 -0.2
1,130,912 - DDA3937_RS05060 0.63 +1.0
1,130,912 - DDA3937_RS05060 0.63 -0.3
1,130,912 - DDA3937_RS05060 0.63 -0.9
1,131,022 + DDA3937_RS05060 0.73 -0.8
1,131,022 + DDA3937_RS05060 0.73 +0.2
1,131,022 + DDA3937_RS05060 0.73 +0.2
1,131,023 - DDA3937_RS05060 0.74 -2.1
1,131,023 - DDA3937_RS05060 0.74 -1.8
1,131,023 - DDA3937_RS05060 0.74 -1.1
1,131,023 - DDA3937_RS05060 0.74 -0.1
1,131,026 + DDA3937_RS05060 0.74 -0.3
1,131,026 + DDA3937_RS05060 0.74 +0.1
1,131,026 + DDA3937_RS05060 0.74 -1.3
1,131,043 + DDA3937_RS05060 0.75 -0.2
1,131,044 - DDA3937_RS05060 0.75 -0.2
1,131,062 - DDA3937_RS05060 0.77 -0.5
1,131,062 - DDA3937_RS05060 0.77 -0.0
1,131,274 + -2.4
1,131,275 - +0.6
1,131,275 - -0.7
1,131,331 + -1.9
1,131,332 - -2.1
1,131,356 - -0.0
1,131,385 + +0.6
1,131,386 - +1.1
1,131,386 - -0.2
1,131,410 - +0.4
1,131,515 + DDA3937_RS05065 0.20 -0.5
1,131,518 - DDA3937_RS05065 0.20 -1.6
1,131,547 + DDA3937_RS05065 0.24 -0.5
1,131,698 + DDA3937_RS05065 0.44 +1.1
1,131,699 - DDA3937_RS05065 0.44 -0.2
1,131,727 + DDA3937_RS05065 0.48 -0.8
1,131,727 + DDA3937_RS05065 0.48 -1.5
1,131,738 - DDA3937_RS05065 0.49 -1.6
1,131,929 + DDA3937_RS05065 0.74 -1.6
1,131,929 + DDA3937_RS05065 0.74 -1.2
1,131,929 + DDA3937_RS05065 0.74 -1.6
1,131,930 - DDA3937_RS05065 0.74 +0.3
1,131,930 - DDA3937_RS05065 0.74 -2.9
1,132,066 + -0.8
1,132,067 - +0.5
1,132,107 + -0.1
1,132,107 + -0.2
1,132,108 - +0.2
1,132,117 + +0.1
1,132,117 + +0.5
1,132,117 + +0.5
1,132,117 + -0.0
1,132,117 + -0.4
1,132,118 - -0.4
1,132,118 - -1.6
1,132,118 - -0.1
1,132,118 - -1.6
1,132,126 - -0.0
1,132,133 - +0.5
1,132,156 + -0.9
1,132,157 - -1.4
1,132,195 + +0.9
1,132,207 + -1.2
1,132,208 - -1.6
1,132,229 + -0.4
1,132,230 - +0.7
1,132,289 + -1.9
1,132,289 + -1.1
1,132,304 - +1.3
1,132,356 + DDA3937_RS05070 0.13 +0.3
1,132,356 + +0.2
1,132,356 + DDA3937_RS05070 0.13 -0.3
1,132,357 - DDA3937_RS05070 0.13 -0.4
1,132,357 - DDA3937_RS05070 0.13 +2.2
1,132,357 - DDA3937_RS05070 0.13 -1.1
1,132,357 - DDA3937_RS05070 0.13 -2.1
1,132,504 + DDA3937_RS05070 0.24 -0.9
1,132,504 + DDA3937_RS05070 0.24 -1.6
1,132,504 + DDA3937_RS05070 0.24 +0.9
1,132,505 - DDA3937_RS05070 0.24 -0.3
1,132,505 - DDA3937_RS05070 0.24 -1.0
1,132,505 - DDA3937_RS05070 0.24 -0.3
1,132,505 - DDA3937_RS05070 0.24 +2.5
1,132,518 - DDA3937_RS05070 0.25 -1.8
1,132,600 + DDA3937_RS05070 0.31 +1.4
1,132,601 - DDA3937_RS05070 0.31 +0.1
1,132,601 - DDA3937_RS05070 0.31 -0.2
1,132,603 + DDA3937_RS05070 0.31 -0.4
1,132,604 - DDA3937_RS05070 0.31 -0.7
1,132,660 + DDA3937_RS05070 0.35 +1.4
1,132,661 - DDA3937_RS05070 0.35 -0.0
1,132,661 - DDA3937_RS05070 0.35 +0.2
1,132,661 - DDA3937_RS05070 0.35 -1.9
1,132,661 - DDA3937_RS05070 0.35 -1.4
1,132,691 + DDA3937_RS05070 0.38 +0.2
1,132,691 + DDA3937_RS05070 0.38 +1.9
1,132,692 - DDA3937_RS05070 0.38 +0.5
1,132,744 + DDA3937_RS05070 0.41 -1.2
1,132,744 + DDA3937_RS05070 0.41 +0.3
1,132,745 - DDA3937_RS05070 0.41 +2.8
1,132,745 - DDA3937_RS05070 0.41 -0.7
1,132,745 - DDA3937_RS05070 0.41 +1.1
1,132,784 + DDA3937_RS05070 0.44 -0.0
1,132,785 - DDA3937_RS05070 0.44 +2.0
1,132,785 - DDA3937_RS05070 0.44 -0.4
1,132,785 - DDA3937_RS05070 0.44 -3.5
1,132,785 - DDA3937_RS05070 0.44 +0.3
1,132,785 - DDA3937_RS05070 0.44 -1.0
1,132,785 - DDA3937_RS05070 0.44 -0.8
1,132,785 - DDA3937_RS05070 0.44 -1.8
1,132,845 - DDA3937_RS05070 0.49 -0.8
1,132,998 - DDA3937_RS05070 0.60 -1.1
1,133,017 - DDA3937_RS05070 0.61 +0.2
1,133,017 - DDA3937_RS05070 0.61 +0.1
1,133,047 + DDA3937_RS05070 0.64 -0.4
1,133,048 - DDA3937_RS05070 0.64 -0.0
1,133,054 - DDA3937_RS05070 0.64 -1.4

Or see this region's nucleotide sequence