Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS04640 and DDA3937_RS04645 are separated by 272 nucleotides DDA3937_RS04645 and DDA3937_RS04650 are separated by 121 nucleotides
DDA3937_RS04640: DDA3937_RS04640 - hypothetical protein, at 1,024,256 to 1,024,879
_RS04640
DDA3937_RS04645: DDA3937_RS04645 - tartrate dehydrogenase, at 1,025,152 to 1,026,237
_RS04645
DDA3937_RS04650: DDA3937_RS04650 - LysR family transcriptional regulator, at 1,026,359 to 1,027,315
_RS04650
Position (kb) 1025
1026
1027 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 1024.158 kb on - strand at 1024.160 kb on + strand at 1024.161 kb on - strand at 1024.183 kb on + strand at 1024.184 kb on - strand at 1024.184 kb on - strand at 1024.184 kb on - strand at 1024.192 kb on + strand at 1024.200 kb on + strand at 1024.200 kb on + strand at 1024.210 kb on + strand at 1024.211 kb on - strand at 1024.212 kb on - strand at 1024.216 kb on + strand at 1024.216 kb on + strand at 1024.216 kb on + strand at 1024.217 kb on - strand at 1024.217 kb on - strand at 1024.217 kb on - strand at 1024.217 kb on - strand at 1024.217 kb on - strand at 1024.217 kb on - strand at 1024.217 kb on - strand at 1024.277 kb on + strand at 1024.277 kb on + strand at 1024.277 kb on + strand at 1024.278 kb on - strand at 1024.278 kb on - strand at 1024.278 kb on - strand at 1024.279 kb on + strand at 1024.279 kb on + strand at 1024.279 kb on + strand at 1024.279 kb on + strand at 1024.280 kb on - strand at 1024.280 kb on - strand at 1024.280 kb on - strand at 1024.280 kb on - strand at 1024.305 kb on - strand at 1024.348 kb on + strand, within DDA3937_RS04640 at 1024.349 kb on - strand, within DDA3937_RS04640 at 1024.352 kb on + strand, within DDA3937_RS04640 at 1024.352 kb on + strand, within DDA3937_RS04640 at 1024.352 kb on + strand, within DDA3937_RS04640 at 1024.353 kb on - strand, within DDA3937_RS04640 at 1024.353 kb on - strand, within DDA3937_RS04640 at 1024.353 kb on - strand, within DDA3937_RS04640 at 1024.353 kb on - strand, within DDA3937_RS04640 at 1024.353 kb on - strand, within DDA3937_RS04640 at 1024.353 kb on - strand, within DDA3937_RS04640 at 1024.353 kb on - strand, within DDA3937_RS04640 at 1024.355 kb on - strand, within DDA3937_RS04640 at 1024.355 kb on - strand, within DDA3937_RS04640 at 1024.386 kb on + strand, within DDA3937_RS04640 at 1024.386 kb on + strand, within DDA3937_RS04640 at 1024.386 kb on + strand, within DDA3937_RS04640 at 1024.386 kb on + strand, within DDA3937_RS04640 at 1024.386 kb on + strand, within DDA3937_RS04640 at 1024.386 kb on + strand, within DDA3937_RS04640 at 1024.386 kb on + strand, within DDA3937_RS04640 at 1024.387 kb on - strand, within DDA3937_RS04640 at 1024.387 kb on - strand, within DDA3937_RS04640 at 1024.387 kb on - strand, within DDA3937_RS04640 at 1024.387 kb on - strand, within DDA3937_RS04640 at 1024.387 kb on - strand, within DDA3937_RS04640 at 1024.387 kb on - strand, within DDA3937_RS04640 at 1024.388 kb on + strand, within DDA3937_RS04640 at 1024.388 kb on + strand, within DDA3937_RS04640 at 1024.388 kb on + strand, within DDA3937_RS04640 at 1024.388 kb on + strand, within DDA3937_RS04640 at 1024.388 kb on + strand, within DDA3937_RS04640 at 1024.389 kb on - strand, within DDA3937_RS04640 at 1024.389 kb on - strand, within DDA3937_RS04640 at 1024.389 kb on - strand, within DDA3937_RS04640 at 1024.389 kb on - strand, within DDA3937_RS04640 at 1024.419 kb on + strand, within DDA3937_RS04640 at 1024.419 kb on + strand, within DDA3937_RS04640 at 1024.420 kb on - strand, within DDA3937_RS04640 at 1024.483 kb on + strand, within DDA3937_RS04640 at 1024.484 kb on - strand, within DDA3937_RS04640 at 1024.506 kb on - strand, within DDA3937_RS04640 at 1024.601 kb on + strand, within DDA3937_RS04640 at 1024.601 kb on + strand, within DDA3937_RS04640 at 1024.601 kb on + strand, within DDA3937_RS04640 at 1024.601 kb on + strand, within DDA3937_RS04640 at 1024.601 kb on + strand, within DDA3937_RS04640 at 1024.601 kb on + strand, within DDA3937_RS04640 at 1024.601 kb on + strand, within DDA3937_RS04640 at 1024.601 kb on + strand, within DDA3937_RS04640 at 1024.601 kb on + strand, within DDA3937_RS04640 at 1024.602 kb on - strand, within DDA3937_RS04640 at 1024.602 kb on - strand, within DDA3937_RS04640 at 1024.602 kb on - strand, within DDA3937_RS04640 at 1024.602 kb on - strand, within DDA3937_RS04640 at 1024.602 kb on - strand, within DDA3937_RS04640 at 1024.602 kb on - strand, within DDA3937_RS04640 at 1024.602 kb on - strand, within DDA3937_RS04640 at 1024.602 kb on - strand, within DDA3937_RS04640 at 1024.602 kb on - strand, within DDA3937_RS04640 at 1024.602 kb on - strand, within DDA3937_RS04640 at 1024.603 kb on + strand, within DDA3937_RS04640 at 1024.642 kb on + strand, within DDA3937_RS04640 at 1024.671 kb on + strand, within DDA3937_RS04640 at 1024.681 kb on + strand, within DDA3937_RS04640 at 1024.690 kb on + strand, within DDA3937_RS04640 at 1024.690 kb on + strand, within DDA3937_RS04640 at 1024.691 kb on - strand, within DDA3937_RS04640 at 1024.748 kb on + strand, within DDA3937_RS04640 at 1024.748 kb on + strand, within DDA3937_RS04640 at 1024.749 kb on - strand, within DDA3937_RS04640 at 1024.837 kb on - strand at 1024.837 kb on - strand at 1024.845 kb on + strand at 1024.845 kb on + strand at 1024.924 kb on + strand at 1024.924 kb on + strand at 1024.925 kb on - strand at 1024.938 kb on + strand at 1024.939 kb on - strand at 1024.994 kb on - strand at 1025.039 kb on + strand at 1025.058 kb on - strand at 1025.073 kb on + strand at 1025.074 kb on - strand at 1025.083 kb on + strand at 1025.084 kb on - strand at 1025.084 kb on - strand at 1025.084 kb on - strand at 1025.084 kb on - strand at 1025.084 kb on - strand at 1025.099 kb on + strand at 1025.100 kb on - strand at 1025.100 kb on - strand at 1025.100 kb on - strand at 1025.100 kb on - strand at 1025.116 kb on - strand at 1025.121 kb on + strand at 1025.153 kb on + strand at 1025.491 kb on - strand, within DDA3937_RS04645 at 1025.816 kb on + strand, within DDA3937_RS04645 at 1025.846 kb on + strand, within DDA3937_RS04645 at 1025.846 kb on + strand, within DDA3937_RS04645 at 1025.846 kb on + strand, within DDA3937_RS04645 at 1025.847 kb on - strand, within DDA3937_RS04645 at 1025.927 kb on + strand, within DDA3937_RS04645 at 1025.927 kb on + strand, within DDA3937_RS04645 at 1025.927 kb on + strand, within DDA3937_RS04645 at 1025.928 kb on - strand, within DDA3937_RS04645 at 1025.928 kb on - strand, within DDA3937_RS04645 at 1026.017 kb on + strand, within DDA3937_RS04645 at 1026.017 kb on + strand, within DDA3937_RS04645 at 1026.018 kb on - strand, within DDA3937_RS04645 at 1026.018 kb on - strand, within DDA3937_RS04645 at 1026.083 kb on + strand, within DDA3937_RS04645 at 1026.083 kb on + strand, within DDA3937_RS04645 at 1026.083 kb on + strand, within DDA3937_RS04645 at 1026.084 kb on - strand, within DDA3937_RS04645 at 1026.084 kb on - strand, within DDA3937_RS04645 at 1026.087 kb on - strand, within DDA3937_RS04645 at 1026.087 kb on - strand, within DDA3937_RS04645 at 1026.290 kb on + strand at 1026.290 kb on + strand at 1026.290 kb on + strand at 1026.291 kb on - strand at 1026.291 kb on - strand at 1026.291 kb on - strand at 1026.295 kb on - strand at 1026.295 kb on - strand at 1026.295 kb on - strand at 1026.344 kb on - strand at 1026.356 kb on + strand at 1026.357 kb on - strand at 1026.394 kb on + strand at 1026.495 kb on + strand, within DDA3937_RS04650 at 1026.496 kb on - strand, within DDA3937_RS04650 at 1026.532 kb on - strand, within DDA3937_RS04650 at 1026.551 kb on + strand, within DDA3937_RS04650 at 1026.551 kb on + strand, within DDA3937_RS04650 at 1026.676 kb on + strand, within DDA3937_RS04650 at 1026.676 kb on + strand, within DDA3937_RS04650 at 1026.779 kb on - strand, within DDA3937_RS04650 at 1026.869 kb on + strand at 1026.960 kb on + strand, within DDA3937_RS04650 at 1026.961 kb on - strand, within DDA3937_RS04650 at 1026.961 kb on - strand, within DDA3937_RS04650 at 1026.961 kb on - strand, within DDA3937_RS04650 at 1026.961 kb on - strand, within DDA3937_RS04650 at 1027.070 kb on - strand, within DDA3937_RS04650 at 1027.139 kb on + strand, within DDA3937_RS04650 at 1027.139 kb on + strand, within DDA3937_RS04650 at 1027.139 kb on + strand, within DDA3937_RS04650 at 1027.140 kb on - strand, within DDA3937_RS04650 at 1027.140 kb on - strand, within DDA3937_RS04650 at 1027.140 kb on - strand, within DDA3937_RS04650 at 1027.160 kb on - strand, within DDA3937_RS04650 at 1027.163 kb on + strand, within DDA3937_RS04650 at 1027.164 kb on - strand, within DDA3937_RS04650 at 1027.172 kb on + strand, within DDA3937_RS04650 at 1027.172 kb on + strand, within DDA3937_RS04650
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 1,024,158 - -0.5 1,024,160 + +0.1 1,024,161 - -1.0 1,024,183 + +0.4 1,024,184 - -0.4 1,024,184 - +0.2 1,024,184 - -0.3 1,024,192 + -1.1 1,024,200 + -1.1 1,024,200 + -0.5 1,024,210 + -2.0 1,024,211 - +0.9 1,024,212 - +2.2 1,024,216 + -0.3 1,024,216 + +2.3 1,024,216 + -2.1 1,024,217 - -1.1 1,024,217 - -0.2 1,024,217 - +0.2 1,024,217 - -1.0 1,024,217 - +0.2 1,024,217 - -0.8 1,024,217 - -0.6 1,024,277 + -0.5 1,024,277 + -0.8 1,024,277 + +0.2 1,024,278 - +0.8 1,024,278 - +0.7 1,024,278 - -1.6 1,024,279 + -0.8 1,024,279 + -0.1 1,024,279 + +0.2 1,024,279 + -0.5 1,024,280 - -1.8 1,024,280 - -1.6 1,024,280 - -0.4 1,024,280 - -2.9 1,024,305 - +1.8 1,024,348 + DDA3937_RS04640 0.15 +0.6 1,024,349 - DDA3937_RS04640 0.15 +2.9 1,024,352 + DDA3937_RS04640 0.15 +0.1 1,024,352 + DDA3937_RS04640 0.15 +1.2 1,024,352 + DDA3937_RS04640 0.15 -1.0 1,024,353 - DDA3937_RS04640 0.16 +0.4 1,024,353 - DDA3937_RS04640 0.16 -0.0 1,024,353 - DDA3937_RS04640 0.16 -1.2 1,024,353 - DDA3937_RS04640 0.16 +0.8 1,024,353 - DDA3937_RS04640 0.16 +0.2 1,024,353 - DDA3937_RS04640 0.16 +0.8 1,024,353 - DDA3937_RS04640 0.16 -2.5 1,024,355 - DDA3937_RS04640 0.16 -0.2 1,024,355 - DDA3937_RS04640 0.16 -0.1 1,024,386 + DDA3937_RS04640 0.21 +0.2 1,024,386 + DDA3937_RS04640 0.21 +1.3 1,024,386 + DDA3937_RS04640 0.21 -2.2 1,024,386 + DDA3937_RS04640 0.21 +0.5 1,024,386 + DDA3937_RS04640 0.21 -2.5 1,024,386 + DDA3937_RS04640 0.21 +0.8 1,024,386 + DDA3937_RS04640 0.21 -0.6 1,024,387 - DDA3937_RS04640 0.21 -0.2 1,024,387 - DDA3937_RS04640 0.21 +0.2 1,024,387 - DDA3937_RS04640 0.21 +2.0 1,024,387 - DDA3937_RS04640 0.21 -0.8 1,024,387 - DDA3937_RS04640 0.21 -1.1 1,024,387 - DDA3937_RS04640 0.21 -0.9 1,024,388 + DDA3937_RS04640 0.21 -0.2 1,024,388 + DDA3937_RS04640 0.21 -2.0 1,024,388 + DDA3937_RS04640 0.21 +1.9 1,024,388 + DDA3937_RS04640 0.21 +0.8 1,024,388 + DDA3937_RS04640 0.21 -0.2 1,024,389 - DDA3937_RS04640 0.21 +0.5 1,024,389 - DDA3937_RS04640 0.21 +0.5 1,024,389 - DDA3937_RS04640 0.21 -0.6 1,024,389 - DDA3937_RS04640 0.21 -0.9 1,024,419 + DDA3937_RS04640 0.26 -0.6 1,024,419 + DDA3937_RS04640 0.26 -0.1 1,024,420 - DDA3937_RS04640 0.26 -0.8 1,024,483 + DDA3937_RS04640 0.36 -0.6 1,024,484 - DDA3937_RS04640 0.37 -0.1 1,024,506 - DDA3937_RS04640 0.40 -0.0 1,024,601 + DDA3937_RS04640 0.55 -0.3 1,024,601 + DDA3937_RS04640 0.55 +1.0 1,024,601 + DDA3937_RS04640 0.55 -1.8 1,024,601 + DDA3937_RS04640 0.55 +0.0 1,024,601 + DDA3937_RS04640 0.55 -0.2 1,024,601 + DDA3937_RS04640 0.55 -0.2 1,024,601 + DDA3937_RS04640 0.55 -1.2 1,024,601 + DDA3937_RS04640 0.55 -1.8 1,024,601 + DDA3937_RS04640 0.55 -0.3 1,024,602 - DDA3937_RS04640 0.55 +2.2 1,024,602 - DDA3937_RS04640 0.55 -0.4 1,024,602 - DDA3937_RS04640 0.55 +0.4 1,024,602 - DDA3937_RS04640 0.55 +0.4 1,024,602 - DDA3937_RS04640 0.55 -0.5 1,024,602 - DDA3937_RS04640 0.55 -0.2 1,024,602 - DDA3937_RS04640 0.55 +3.1 1,024,602 - DDA3937_RS04640 0.55 -2.6 1,024,602 - DDA3937_RS04640 0.55 -1.2 1,024,602 - DDA3937_RS04640 0.55 +0.5 1,024,603 + DDA3937_RS04640 0.56 -0.2 1,024,642 + DDA3937_RS04640 0.62 +2.2 1,024,671 + DDA3937_RS04640 0.67 -0.8 1,024,681 + DDA3937_RS04640 0.68 -1.9 1,024,690 + DDA3937_RS04640 0.70 -0.3 1,024,690 + DDA3937_RS04640 0.70 -0.2 1,024,691 - DDA3937_RS04640 0.70 -0.6 1,024,748 + DDA3937_RS04640 0.79 -0.7 1,024,748 + DDA3937_RS04640 0.79 +0.9 1,024,749 - DDA3937_RS04640 0.79 +0.2 1,024,837 - -0.5 1,024,837 - -0.8 1,024,845 + -0.1 1,024,845 + -1.6 1,024,924 + +0.7 1,024,924 + +0.2 1,024,925 - -1.2 1,024,938 + -1.9 1,024,939 - -0.8 1,024,994 - -0.8 1,025,039 + +0.4 1,025,058 - -1.8 1,025,073 + -0.7 1,025,074 - +0.1 1,025,083 + -0.4 1,025,084 - +0.2 1,025,084 - -0.1 1,025,084 - -1.4 1,025,084 - +0.8 1,025,084 - +1.0 1,025,099 + -1.1 1,025,100 - +0.1 1,025,100 - -1.8 1,025,100 - -0.2 1,025,100 - +2.6 1,025,116 - -1.2 1,025,121 + -0.5 1,025,153 + -0.6 1,025,491 - DDA3937_RS04645 0.31 -1.6 1,025,816 + DDA3937_RS04645 0.61 -1.0 1,025,846 + DDA3937_RS04645 0.64 -0.8 1,025,846 + DDA3937_RS04645 0.64 -0.0 1,025,846 + DDA3937_RS04645 0.64 +1.1 1,025,847 - DDA3937_RS04645 0.64 -0.4 1,025,927 + DDA3937_RS04645 0.71 -0.1 1,025,927 + DDA3937_RS04645 0.71 +0.7 1,025,927 + DDA3937_RS04645 0.71 -1.3 1,025,928 - DDA3937_RS04645 0.71 +0.2 1,025,928 - DDA3937_RS04645 0.71 +0.2 1,026,017 + DDA3937_RS04645 0.80 +1.4 1,026,017 + DDA3937_RS04645 0.80 -0.9 1,026,018 - DDA3937_RS04645 0.80 +5.4 1,026,018 - DDA3937_RS04645 0.80 +0.4 1,026,083 + DDA3937_RS04645 0.86 +0.9 1,026,083 + DDA3937_RS04645 0.86 -1.1 1,026,083 + DDA3937_RS04645 0.86 -0.0 1,026,084 - DDA3937_RS04645 0.86 -1.8 1,026,084 - DDA3937_RS04645 0.86 -0.8 1,026,087 - DDA3937_RS04645 0.86 +0.1 1,026,087 - DDA3937_RS04645 0.86 +3.9 1,026,290 + +0.1 1,026,290 + -0.8 1,026,290 + +0.2 1,026,291 - -0.0 1,026,291 - +0.4 1,026,291 - -0.3 1,026,295 - -0.7 1,026,295 - +0.1 1,026,295 - +0.8 1,026,344 - +2.2 1,026,356 + -1.3 1,026,357 - -1.5 1,026,394 + -1.7 1,026,495 + DDA3937_RS04650 0.14 -0.2 1,026,496 - DDA3937_RS04650 0.14 +0.4 1,026,532 - DDA3937_RS04650 0.18 -1.8 1,026,551 + DDA3937_RS04650 0.20 -0.1 1,026,551 + DDA3937_RS04650 0.20 -1.6 1,026,676 + DDA3937_RS04650 0.33 +0.4 1,026,676 + DDA3937_RS04650 0.33 -1.1 1,026,779 - DDA3937_RS04650 0.44 -0.1 1,026,869 + +3.5 1,026,960 + DDA3937_RS04650 0.63 -0.3 1,026,961 - DDA3937_RS04650 0.63 +0.2 1,026,961 - DDA3937_RS04650 0.63 +0.9 1,026,961 - DDA3937_RS04650 0.63 -0.7 1,026,961 - DDA3937_RS04650 0.63 +1.0 1,027,070 - DDA3937_RS04650 0.74 -1.8 1,027,139 + DDA3937_RS04650 0.82 -2.4 1,027,139 + DDA3937_RS04650 0.82 -0.0 1,027,139 + DDA3937_RS04650 0.82 -0.4 1,027,140 - DDA3937_RS04650 0.82 -1.2 1,027,140 - DDA3937_RS04650 0.82 +0.2 1,027,140 - DDA3937_RS04650 0.82 -0.6 1,027,160 - DDA3937_RS04650 0.84 -2.1 1,027,163 + DDA3937_RS04650 0.84 -0.3 1,027,164 - DDA3937_RS04650 0.84 -0.0 1,027,172 + DDA3937_RS04650 0.85 +0.0 1,027,172 + DDA3937_RS04650 0.85 -1.1
Or see this region's nucleotide sequence