Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03955 and DDA3937_RS03960 overlap by 4 nucleotides DDA3937_RS03960 and DDA3937_RS21890 are separated by 743 nucleotides
DDA3937_RS03955: DDA3937_RS03955 - DNA phosphorothioation system sulfurtransferase DndC, at 883,049 to 884,683
_RS03955
DDA3937_RS03960: DDA3937_RS03960 - DNA sulfur modification protein DndB, at 884,680 to 885,765
_RS03960
DDA3937_RS21890: DDA3937_RS21890 - DUF3363 domain-containing protein, at 886,509 to 886,736
_RS21890
Position (kb) 884
885
886 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 883.701 kb on + strand, within DDA3937_RS03955 at 883.701 kb on + strand, within DDA3937_RS03955 at 883.702 kb on - strand, within DDA3937_RS03955 at 883.702 kb on - strand, within DDA3937_RS03955 at 883.702 kb on - strand, within DDA3937_RS03955 at 883.702 kb on - strand, within DDA3937_RS03955 at 883.710 kb on + strand, within DDA3937_RS03955 at 883.710 kb on + strand, within DDA3937_RS03955 at 883.816 kb on + strand, within DDA3937_RS03955 at 883.830 kb on - strand, within DDA3937_RS03955 at 883.924 kb on + strand, within DDA3937_RS03955 at 883.924 kb on + strand, within DDA3937_RS03955 at 883.924 kb on + strand, within DDA3937_RS03955 at 883.926 kb on + strand at 883.926 kb on + strand, within DDA3937_RS03955 at 883.926 kb on + strand, within DDA3937_RS03955 at 883.926 kb on + strand, within DDA3937_RS03955 at 883.926 kb on + strand, within DDA3937_RS03955 at 883.926 kb on + strand, within DDA3937_RS03955 at 883.927 kb on - strand, within DDA3937_RS03955 at 883.927 kb on - strand, within DDA3937_RS03955 at 883.927 kb on - strand, within DDA3937_RS03955 at 883.927 kb on - strand, within DDA3937_RS03955 at 883.927 kb on - strand, within DDA3937_RS03955 at 883.927 kb on - strand, within DDA3937_RS03955 at 883.927 kb on - strand, within DDA3937_RS03955 at 883.981 kb on + strand, within DDA3937_RS03955 at 884.033 kb on + strand, within DDA3937_RS03955 at 884.033 kb on + strand, within DDA3937_RS03955 at 884.033 kb on + strand, within DDA3937_RS03955 at 884.033 kb on + strand, within DDA3937_RS03955 at 884.045 kb on - strand, within DDA3937_RS03955 at 884.058 kb on + strand, within DDA3937_RS03955 at 884.058 kb on + strand, within DDA3937_RS03955 at 884.058 kb on + strand, within DDA3937_RS03955 at 884.058 kb on + strand, within DDA3937_RS03955 at 884.058 kb on + strand, within DDA3937_RS03955 at 884.058 kb on + strand, within DDA3937_RS03955 at 884.058 kb on + strand, within DDA3937_RS03955 at 884.058 kb on + strand, within DDA3937_RS03955 at 884.058 kb on + strand at 884.059 kb on - strand, within DDA3937_RS03955 at 884.059 kb on - strand, within DDA3937_RS03955 at 884.059 kb on - strand, within DDA3937_RS03955 at 884.059 kb on - strand, within DDA3937_RS03955 at 884.062 kb on + strand, within DDA3937_RS03955 at 884.062 kb on + strand, within DDA3937_RS03955 at 884.062 kb on + strand, within DDA3937_RS03955 at 884.062 kb on + strand, within DDA3937_RS03955 at 884.063 kb on - strand, within DDA3937_RS03955 at 884.063 kb on - strand, within DDA3937_RS03955 at 884.063 kb on - strand, within DDA3937_RS03955 at 884.063 kb on - strand, within DDA3937_RS03955 at 884.063 kb on - strand, within DDA3937_RS03955 at 884.083 kb on + strand, within DDA3937_RS03955 at 884.084 kb on - strand, within DDA3937_RS03955 at 884.152 kb on + strand, within DDA3937_RS03955 at 884.155 kb on + strand, within DDA3937_RS03955 at 884.155 kb on + strand, within DDA3937_RS03955 at 884.156 kb on - strand, within DDA3937_RS03955 at 884.156 kb on - strand, within DDA3937_RS03955 at 884.156 kb on - strand, within DDA3937_RS03955 at 884.201 kb on - strand, within DDA3937_RS03955 at 884.201 kb on - strand, within DDA3937_RS03955 at 884.201 kb on - strand, within DDA3937_RS03955 at 884.209 kb on + strand, within DDA3937_RS03955 at 884.210 kb on - strand, within DDA3937_RS03955 at 884.210 kb on - strand, within DDA3937_RS03955 at 884.237 kb on - strand, within DDA3937_RS03955 at 884.246 kb on - strand, within DDA3937_RS03955 at 884.261 kb on - strand, within DDA3937_RS03955 at 884.292 kb on - strand, within DDA3937_RS03955 at 884.356 kb on + strand, within DDA3937_RS03955 at 884.357 kb on - strand, within DDA3937_RS03955 at 884.357 kb on - strand, within DDA3937_RS03955 at 884.396 kb on - strand, within DDA3937_RS03955 at 884.399 kb on + strand, within DDA3937_RS03955 at 884.399 kb on + strand, within DDA3937_RS03955 at 884.400 kb on - strand, within DDA3937_RS03955 at 884.405 kb on + strand, within DDA3937_RS03955 at 884.409 kb on - strand, within DDA3937_RS03955 at 884.409 kb on - strand, within DDA3937_RS03955 at 884.497 kb on - strand, within DDA3937_RS03955 at 884.536 kb on + strand at 884.537 kb on - strand at 884.538 kb on + strand at 884.538 kb on + strand at 884.538 kb on + strand at 884.539 kb on - strand at 884.595 kb on + strand at 884.636 kb on - strand at 884.636 kb on - strand at 884.636 kb on - strand at 884.647 kb on - strand at 884.661 kb on + strand at 884.662 kb on - strand at 884.672 kb on + strand at 884.672 kb on + strand at 884.673 kb on - strand at 884.677 kb on + strand at 884.677 kb on + strand at 884.678 kb on - strand at 884.688 kb on + strand at 884.688 kb on + strand at 884.689 kb on - strand at 884.758 kb on - strand at 884.765 kb on - strand at 884.788 kb on - strand at 884.847 kb on + strand, within DDA3937_RS03960 at 884.848 kb on - strand, within DDA3937_RS03960 at 884.848 kb on - strand, within DDA3937_RS03960 at 884.848 kb on - strand, within DDA3937_RS03960 at 884.848 kb on - strand, within DDA3937_RS03960 at 884.902 kb on + strand, within DDA3937_RS03960 at 884.902 kb on + strand, within DDA3937_RS03960 at 884.903 kb on - strand, within DDA3937_RS03960 at 884.903 kb on - strand, within DDA3937_RS03960 at 884.957 kb on + strand, within DDA3937_RS03960 at 884.957 kb on + strand, within DDA3937_RS03960 at 884.957 kb on + strand, within DDA3937_RS03960 at 884.957 kb on + strand, within DDA3937_RS03960 at 884.957 kb on + strand, within DDA3937_RS03960 at 884.958 kb on - strand, within DDA3937_RS03960 at 884.958 kb on - strand, within DDA3937_RS03960 at 884.958 kb on - strand, within DDA3937_RS03960 at 884.958 kb on - strand, within DDA3937_RS03960 at 884.958 kb on - strand, within DDA3937_RS03960 at 884.958 kb on - strand, within DDA3937_RS03960 at 884.958 kb on - strand, within DDA3937_RS03960 at 884.958 kb on - strand, within DDA3937_RS03960 at 885.130 kb on + strand, within DDA3937_RS03960 at 885.190 kb on + strand, within DDA3937_RS03960 at 885.190 kb on + strand, within DDA3937_RS03960 at 885.190 kb on + strand, within DDA3937_RS03960 at 885.190 kb on + strand, within DDA3937_RS03960 at 885.190 kb on + strand, within DDA3937_RS03960 at 885.190 kb on + strand, within DDA3937_RS03960 at 885.190 kb on + strand, within DDA3937_RS03960 at 885.190 kb on + strand, within DDA3937_RS03960 at 885.191 kb on - strand, within DDA3937_RS03960 at 885.191 kb on - strand, within DDA3937_RS03960 at 885.192 kb on + strand, within DDA3937_RS03960 at 885.193 kb on - strand, within DDA3937_RS03960 at 885.218 kb on + strand, within DDA3937_RS03960 at 885.218 kb on + strand, within DDA3937_RS03960 at 885.219 kb on - strand, within DDA3937_RS03960 at 885.254 kb on + strand, within DDA3937_RS03960 at 885.290 kb on + strand, within DDA3937_RS03960 at 885.290 kb on + strand, within DDA3937_RS03960 at 885.291 kb on - strand, within DDA3937_RS03960 at 885.291 kb on - strand, within DDA3937_RS03960 at 885.391 kb on + strand, within DDA3937_RS03960 at 885.391 kb on + strand, within DDA3937_RS03960 at 885.391 kb on + strand, within DDA3937_RS03960 at 885.392 kb on - strand, within DDA3937_RS03960 at 885.392 kb on - strand, within DDA3937_RS03960 at 885.392 kb on - strand, within DDA3937_RS03960 at 885.392 kb on - strand, within DDA3937_RS03960 at 885.411 kb on + strand, within DDA3937_RS03960 at 885.436 kb on + strand, within DDA3937_RS03960 at 885.458 kb on - strand, within DDA3937_RS03960 at 885.458 kb on - strand, within DDA3937_RS03960 at 885.463 kb on + strand, within DDA3937_RS03960 at 885.481 kb on - strand, within DDA3937_RS03960 at 885.481 kb on - strand, within DDA3937_RS03960 at 885.545 kb on + strand, within DDA3937_RS03960 at 885.546 kb on - strand, within DDA3937_RS03960 at 885.569 kb on + strand, within DDA3937_RS03960 at 885.570 kb on - strand, within DDA3937_RS03960 at 885.669 kb on + strand at 885.669 kb on + strand at 885.670 kb on - strand at 885.670 kb on - strand at 885.670 kb on - strand at 885.676 kb on - strand at 885.692 kb on + strand at 885.692 kb on + strand at 885.692 kb on + strand at 885.692 kb on + strand at 885.692 kb on + strand at 885.692 kb on - strand at 885.693 kb on - strand at 885.693 kb on - strand at 885.693 kb on - strand at 885.693 kb on - strand at 885.693 kb on - strand at 885.693 kb on - strand at 885.693 kb on - strand at 885.693 kb on - strand at 885.693 kb on - strand at 885.693 kb on - strand at 885.693 kb on - strand at 885.693 kb on - strand at 885.693 kb on - strand at 885.693 kb on - strand at 885.721 kb on + strand at 885.721 kb on + strand at 885.721 kb on + strand at 885.721 kb on + strand at 885.721 kb on + strand at 885.721 kb on + strand at 885.721 kb on + strand at 885.722 kb on - strand at 885.722 kb on - strand at 885.722 kb on - strand at 885.722 kb on - strand at 885.722 kb on - strand at 885.722 kb on - strand at 885.722 kb on - strand at 885.722 kb on - strand at 885.723 kb on + strand at 885.723 kb on + strand at 885.724 kb on - strand at 885.724 kb on - strand at 885.724 kb on - strand at 885.724 kb on - strand at 885.738 kb on - strand at 885.743 kb on + strand at 885.744 kb on - strand at 885.760 kb on - strand at 885.760 kb on - strand at 885.770 kb on + strand at 885.770 kb on + strand at 885.770 kb on + strand at 885.778 kb on - strand at 885.780 kb on - strand at 885.787 kb on - strand at 885.787 kb on - strand at 885.817 kb on - strand at 885.817 kb on - strand at 885.851 kb on - strand at 885.851 kb on - strand at 885.877 kb on - strand at 885.877 kb on - strand at 885.881 kb on + strand at 885.881 kb on + strand at 885.882 kb on - strand at 885.882 kb on - strand at 885.882 kb on - strand at 885.890 kb on - strand at 885.901 kb on + strand at 885.901 kb on + strand at 885.901 kb on + strand at 885.901 kb on + strand at 885.901 kb on + strand at 885.901 kb on + strand at 885.902 kb on - strand at 885.902 kb on - strand at 885.902 kb on - strand at 885.902 kb on - strand at 885.902 kb on - strand at 885.902 kb on - strand at 885.902 kb on - strand at 885.909 kb on + strand at 885.909 kb on + strand at 885.909 kb on + strand at 885.909 kb on + strand at 885.910 kb on - strand at 885.910 kb on - strand at 885.910 kb on - strand at 885.927 kb on + strand at 885.927 kb on + strand at 885.927 kb on + strand at 885.928 kb on - strand at 885.936 kb on + strand at 885.937 kb on - strand at 885.937 kb on - strand at 885.937 kb on - strand at 885.952 kb on - strand at 885.960 kb on + strand at 885.961 kb on - strand at 885.961 kb on - strand at 885.961 kb on - strand at 886.029 kb on - strand at 886.029 kb on - strand at 886.029 kb on - strand at 886.029 kb on - strand at 886.034 kb on + strand at 886.034 kb on + strand at 886.034 kb on + strand at 886.034 kb on + strand at 886.034 kb on + strand at 886.034 kb on + strand at 886.034 kb on + strand at 886.035 kb on - strand at 886.035 kb on - strand at 886.035 kb on - strand at 886.035 kb on - strand at 886.035 kb on - strand at 886.035 kb on - strand at 886.046 kb on - strand at 886.057 kb on + strand at 886.057 kb on + strand at 886.057 kb on + strand at 886.057 kb on + strand at 886.058 kb on - strand at 886.069 kb on + strand at 886.069 kb on + strand at 886.069 kb on + strand at 886.069 kb on + strand at 886.070 kb on - strand at 886.112 kb on - strand at 886.152 kb on - strand at 886.152 kb on - strand at 886.159 kb on + strand at 886.159 kb on + strand at 886.160 kb on - strand at 886.180 kb on + strand at 886.180 kb on + strand at 886.181 kb on - strand at 886.181 kb on - strand at 886.181 kb on - strand at 886.182 kb on + strand at 886.182 kb on + strand at 886.182 kb on + strand at 886.182 kb on + strand at 886.182 kb on + strand at 886.182 kb on + strand at 886.182 kb on + strand at 886.182 kb on + strand at 886.183 kb on - strand at 886.183 kb on - strand at 886.183 kb on - strand at 886.183 kb on - strand at 886.183 kb on - strand at 886.183 kb on - strand at 886.266 kb on + strand at 886.266 kb on + strand at 886.267 kb on - strand at 886.267 kb on - strand at 886.267 kb on - strand at 886.267 kb on - strand at 886.270 kb on + strand at 886.270 kb on + strand at 886.270 kb on + strand at 886.271 kb on - strand at 886.271 kb on - strand at 886.271 kb on - strand at 886.291 kb on - strand at 886.294 kb on + strand at 886.294 kb on + strand at 886.294 kb on + strand at 886.294 kb on + strand at 886.295 kb on - strand at 886.330 kb on + strand at 886.331 kb on - strand at 886.351 kb on + strand at 886.351 kb on + strand at 886.351 kb on + strand at 886.351 kb on + strand at 886.351 kb on + strand at 886.351 kb on + strand at 886.351 kb on + strand at 886.352 kb on - strand at 886.352 kb on - strand at 886.352 kb on - strand at 886.352 kb on - strand at 886.352 kb on - strand at 886.352 kb on - strand at 886.364 kb on + strand at 886.364 kb on + strand at 886.365 kb on - strand at 886.365 kb on - strand at 886.373 kb on + strand at 886.373 kb on + strand at 886.373 kb on + strand at 886.374 kb on - strand at 886.391 kb on + strand at 886.391 kb on + strand at 886.391 kb on + strand at 886.392 kb on - strand at 886.395 kb on + strand at 886.395 kb on + strand at 886.395 kb on + strand at 886.395 kb on + strand at 886.395 kb on + strand at 886.395 kb on + strand at 886.395 kb on + strand at 886.395 kb on + strand at 886.395 kb on + strand at 886.396 kb on - strand at 886.396 kb on - strand at 886.396 kb on - strand at 886.396 kb on - strand at 886.396 kb on - strand at 886.396 kb on - strand at 886.396 kb on - strand at 886.396 kb on - strand at 886.396 kb on - strand at 886.396 kb on - strand at 886.396 kb on - strand at 886.396 kb on - strand at 886.398 kb on - strand at 886.398 kb on - strand at 886.406 kb on + strand at 886.438 kb on - strand at 886.438 kb on - strand at 886.438 kb on - strand at 886.441 kb on + strand at 886.442 kb on - strand at 886.490 kb on + strand at 886.490 kb on + strand at 886.490 kb on + strand at 886.490 kb on + strand at 886.491 kb on - strand at 886.500 kb on + strand at 886.500 kb on + strand at 886.501 kb on - strand at 886.501 kb on - strand at 886.504 kb on + strand at 886.504 kb on + strand at 886.505 kb on - strand at 886.510 kb on + strand at 886.510 kb on + strand at 886.511 kb on - strand at 886.511 kb on - strand at 886.515 kb on + strand at 886.516 kb on - strand at 886.541 kb on + strand, within DDA3937_RS21890 at 886.541 kb on + strand, within DDA3937_RS21890 at 886.541 kb on + strand, within DDA3937_RS21890 at 886.541 kb on + strand, within DDA3937_RS21890 at 886.542 kb on - strand, within DDA3937_RS21890 at 886.542 kb on - strand, within DDA3937_RS21890 at 886.554 kb on + strand, within DDA3937_RS21890 at 886.554 kb on + strand, within DDA3937_RS21890 at 886.554 kb on + strand, within DDA3937_RS21890 at 886.555 kb on - strand, within DDA3937_RS21890 at 886.654 kb on + strand, within DDA3937_RS21890 at 886.682 kb on + strand, within DDA3937_RS21890 at 886.685 kb on + strand, within DDA3937_RS21890
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 883,701 + DDA3937_RS03955 0.40 -1.3 883,701 + DDA3937_RS03955 0.40 -0.1 883,702 - DDA3937_RS03955 0.40 -0.6 883,702 - DDA3937_RS03955 0.40 -1.7 883,702 - DDA3937_RS03955 0.40 +2.6 883,702 - DDA3937_RS03955 0.40 -0.9 883,710 + DDA3937_RS03955 0.40 +0.3 883,710 + DDA3937_RS03955 0.40 +0.2 883,816 + DDA3937_RS03955 0.47 -2.5 883,830 - DDA3937_RS03955 0.48 -0.7 883,924 + DDA3937_RS03955 0.54 -1.3 883,924 + DDA3937_RS03955 0.54 -0.5 883,924 + DDA3937_RS03955 0.54 +1.1 883,926 + +1.3 883,926 + DDA3937_RS03955 0.54 +0.6 883,926 + DDA3937_RS03955 0.54 -1.8 883,926 + DDA3937_RS03955 0.54 -1.1 883,926 + DDA3937_RS03955 0.54 -0.6 883,926 + DDA3937_RS03955 0.54 +1.4 883,927 - DDA3937_RS03955 0.54 -0.6 883,927 - DDA3937_RS03955 0.54 -0.1 883,927 - DDA3937_RS03955 0.54 -1.0 883,927 - DDA3937_RS03955 0.54 +0.1 883,927 - DDA3937_RS03955 0.54 -0.7 883,927 - DDA3937_RS03955 0.54 -0.4 883,927 - DDA3937_RS03955 0.54 -1.3 883,981 + DDA3937_RS03955 0.57 -0.6 884,033 + DDA3937_RS03955 0.60 -0.8 884,033 + DDA3937_RS03955 0.60 -0.2 884,033 + DDA3937_RS03955 0.60 +0.2 884,033 + DDA3937_RS03955 0.60 -0.1 884,045 - DDA3937_RS03955 0.61 -1.3 884,058 + DDA3937_RS03955 0.62 -0.7 884,058 + DDA3937_RS03955 0.62 -0.3 884,058 + DDA3937_RS03955 0.62 +0.8 884,058 + DDA3937_RS03955 0.62 -2.0 884,058 + DDA3937_RS03955 0.62 +0.6 884,058 + DDA3937_RS03955 0.62 +0.7 884,058 + DDA3937_RS03955 0.62 -0.5 884,058 + DDA3937_RS03955 0.62 -0.1 884,058 + +0.3 884,059 - DDA3937_RS03955 0.62 -0.8 884,059 - DDA3937_RS03955 0.62 +0.1 884,059 - DDA3937_RS03955 0.62 -2.7 884,059 - DDA3937_RS03955 0.62 -0.6 884,062 + DDA3937_RS03955 0.62 +0.2 884,062 + DDA3937_RS03955 0.62 +0.5 884,062 + DDA3937_RS03955 0.62 -0.0 884,062 + DDA3937_RS03955 0.62 -0.3 884,063 - DDA3937_RS03955 0.62 -0.6 884,063 - DDA3937_RS03955 0.62 +0.7 884,063 - DDA3937_RS03955 0.62 -1.3 884,063 - DDA3937_RS03955 0.62 +0.3 884,063 - DDA3937_RS03955 0.62 -0.4 884,083 + DDA3937_RS03955 0.63 +0.5 884,084 - DDA3937_RS03955 0.63 -0.4 884,152 + DDA3937_RS03955 0.67 +0.7 884,155 + DDA3937_RS03955 0.68 +0.3 884,155 + DDA3937_RS03955 0.68 -0.7 884,156 - DDA3937_RS03955 0.68 +0.3 884,156 - DDA3937_RS03955 0.68 -0.8 884,156 - DDA3937_RS03955 0.68 -0.2 884,201 - DDA3937_RS03955 0.70 -0.2 884,201 - DDA3937_RS03955 0.70 -0.7 884,201 - DDA3937_RS03955 0.70 -0.3 884,209 + DDA3937_RS03955 0.71 -1.0 884,210 - DDA3937_RS03955 0.71 +1.1 884,210 - DDA3937_RS03955 0.71 +1.1 884,237 - DDA3937_RS03955 0.73 -0.4 884,246 - DDA3937_RS03955 0.73 +0.2 884,261 - DDA3937_RS03955 0.74 +0.2 884,292 - DDA3937_RS03955 0.76 +0.4 884,356 + DDA3937_RS03955 0.80 -0.5 884,357 - DDA3937_RS03955 0.80 -0.2 884,357 - DDA3937_RS03955 0.80 -0.9 884,396 - DDA3937_RS03955 0.82 -1.1 884,399 + DDA3937_RS03955 0.83 -1.7 884,399 + DDA3937_RS03955 0.83 -3.1 884,400 - DDA3937_RS03955 0.83 -0.1 884,405 + DDA3937_RS03955 0.83 -0.1 884,409 - DDA3937_RS03955 0.83 -2.4 884,409 - DDA3937_RS03955 0.83 +0.2 884,497 - DDA3937_RS03955 0.89 -0.7 884,536 + +0.1 884,537 - -2.0 884,538 + +0.2 884,538 + -1.7 884,538 + -1.5 884,539 - -0.3 884,595 + -1.3 884,636 - +0.3 884,636 - +0.1 884,636 - -2.1 884,647 - -1.3 884,661 + -2.8 884,662 - 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DDA3937_RS21890 0.20 +2.4 886,654 + DDA3937_RS21890 0.64 -1.4 886,682 + DDA3937_RS21890 0.76 +1.3 886,685 + DDA3937_RS21890 0.77 +1.6
Or see this region's nucleotide sequence